BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0014.p (331 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIK1.1 B3KIK1_9BACI Helix-turn-helix domain protein 209 4e-52 B1DLF5.1 B1DLF5_9BACL Transcriptional regulator, XRE family 139 3e-31 Q2B1K4.1 Q2B1K4_9BACI Putative uncharacterized protein 127 1e-27 B7GJN6.1 B7GJN6_ANOFW Uncharacterized HTH XRE-family DNA-binding... 122 5e-26 C0ZF19.1 C0ZF19_BREBN Putative DNA-binding protein 120 2e-25 >B3KIK1.1 B3KIK1_9BACI Helix-turn-helix domain protein Length = 340 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 100/135 (74%), Positives = 115/135 (85%), Gaps = 2/135 (1%) Query: 1 MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 MSELG+ L+EARLQKGMSLDDVQE+TKIRK+YLEAIEAGDYKVLPGSFYVRAFIKTYAEA Sbjct: 1 MSELGQQLREARLQKGMSLDDVQEMTKIRKRYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 Query: 61 VDVNPDELMEEHG-NVPAAPVETPMETVIQKRSRRPETERNAKWLPTVLMWTFPVLIIVV 119 V ++PDEL+E H +VP + E ME VIQKR+ RP ERN KWLPT+LMWTFP+LI+VV Sbjct: 61 VGIDPDELLEGHKQDVPKSEPEATMEPVIQKRASRPTAERNMKWLPTLLMWTFPILIVVV 120 Query: 120 IYMYA-SSNMNKPEP 133 IY+ A +SN K EP Sbjct: 121 IYLVAINSNEPKDEP 135 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 60/109 (55%), Positives = 79/109 (72%), Gaps = 5/109 (4%) Query: 198 TVTQDRKSGKTTVYKVSAPAGSAVQVQIAA--SGVSWLEVYKGENSKGEKLSFGNTAAGD 255 TVTQDR GK TV+KVS GS+V+V+I A G SW+EVY+G N+ GEKL+F G Sbjct: 215 TVTQDRTEGKNTVFKVS---GSSVKVEIVAISDGKSWVEVYRGNNASGEKLAFQMLENGA 271 Query: 256 NLSFTLDSEGMYIKSGYSPATEITVNGQVITDGKTSSRLLLELDNNPAS 304 +LSF +DS+G+Y+KS S AT ITV GQ +TDGK++SR++LE + AS Sbjct: 272 SLSFDMDSQGLYVKSANSAATTITVGGQPVTDGKSTSRIVLEPADGSAS 320 >B1DLF5.1 B1DLF5_9BACL Transcriptional regulator, XRE family Length = 310 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 111/336 (33%), Positives = 172/336 (51%), Gaps = 40/336 (11%) Query: 1 MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 MS+LG L++AR ++G++LDDVQE+TKIRK+YLEAIE+GD+ VLPG+FY+RAF+K Y +A Sbjct: 1 MSDLGALLRKAREERGLTLDDVQEITKIRKRYLEAIESGDHSVLPGTFYLRAFVKNYCDA 60 Query: 61 VDVNPDELMEEHGN-VPAAPVETPMETVIQKRSRRPET---ERNAKWLPTVLMWTFPVLI 116 V ++ +E++ + + +PA+ + +E V ++ +R T ER +K ++MW+F +++ Sbjct: 61 VGLDSEEVLRLYQHEIPASVTDQIVEAVPARQPKRVRTRSSERISKLGFNIMMWSF-LIL 119 Query: 117 IVVIYMYASSNMNKPEPDKAEPGNLTTATQDPSKVQXXXXXXXXXXXXXXXXXXXXXXXX 176 IVV+ N +P++ + N+T Q Sbjct: 120 IVVVVWVYFVNQKADKPNEIDNTNITDQASPAPPSQSPNSSNGSGTTTPTATPTPTPSQS 179 Query: 177 XXXXXXXXXXXXXXXXXXQEVTVTQDRKSGKTTVYKVSAPAGSAVQVQIAAS-GVSWLEV 235 T+T K GK Y V APAG +V+I S G SW EV Sbjct: 180 -------------------PTTLTFSSKVGKVDHYDV-APAGVVHKVEIKISGGPSWTEV 219 Query: 236 YKGENSKGEKLSFGNTAAGDNLSFTLD-SEGMYIKSGYSPATEITVNGQVITDGKTSSRL 294 G +S +S A D +FT D + +YI G + + ITV+G I DG + Sbjct: 220 RSGSSSGKAIIS---ETAPDGSAFTYDLDQPLYINVGRADLSSITVDGVQINDGDRAGSK 276 Query: 295 LLELDNNPASEDTSGAQDSGTEGSQ--DNAANQGNT 328 ++L NP GA GTEG+Q DN++ G++ Sbjct: 277 KIQL--NP----VEGA--GGTEGTQSPDNSSTPGDS 304 >Q2B1K4.1 Q2B1K4_9BACI Putative uncharacterized protein Length = 304 Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 66/146 (45%), Positives = 97/146 (66%), Gaps = 6/146 (4%) Query: 1 MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 ++ELG HLKEAR+++GMSLDD+Q TKI+K+YL IE G+Y ++PG FYVRAFIK YAEA Sbjct: 4 LTELGNHLKEARIERGMSLDDLQTATKIQKRYLVGIEEGNYSMMPGKFYVRAFIKQYAEA 63 Query: 61 VDVNPDELMEEHGN---VPAAPVETP--METVIQKRSRRPETERNAKWLPTVLMWTFPVL 115 V ++P+EL E++ N V AA + P + V +++ + R A LP +L+ F V Sbjct: 64 VGIDPEELFEQYKNDIPVTAASDDIPEKLSRVQTRKNISGSSSRLADLLPKILIGVFVVG 123 Query: 116 IIVVIYMY-ASSNMNKPEPDKAEPGN 140 +I ++Y + +N K E + A+ GN Sbjct: 124 VIALLYYFIVMANNGKDEGEPADNGN 149 >B7GJN6.1 B7GJN6_ANOFW Uncharacterized HTH XRE-family DNA-binding protein Length = 286 Score = 122 bits (305), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 63/136 (46%), Positives = 92/136 (67%), Gaps = 3/136 (2%) Query: 1 MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 ++ELG+ LKEAR Q+ MSLDD+QE+TKI+K+YL AIE G+Y ++PG FYVRAFI+ YAEA Sbjct: 4 LTELGKRLKEAREQRNMSLDDLQEITKIQKRYLIAIEQGNYVIMPGKFYVRAFIRQYAEA 63 Query: 61 VDVNPDELMEEHGN-VP-AAPVETPME-TVIQKRSRRPETERNAKWLPTVLMWTFPVLII 117 V ++PDEL E++ N +P A E P E + ++ R + E+ LP +L+ T V + Sbjct: 64 VGLDPDELFEQYANEIPNAQQEELPGELSRVKSRQLSEQGEKVLDILPKILIGTLAVGVA 123 Query: 118 VVIYMYASSNMNKPEP 133 VV++ + S +P Sbjct: 124 VVLWFFFQSRTVDEQP 139 >C0ZF19.1 C0ZF19_BREBN Putative DNA-binding protein Length = 299 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 92/144 (63%), Gaps = 9/144 (6%) Query: 1 MSELGRHLKEARLQKGMSLDDVQEVTKIRKKYLEAIEAGDYKVLPGSFYVRAFIKTYAEA 60 MSELG+ L+ AR +KG++LDD+Q +TKI+++YLEAIE G + VLPG FY RAFIK+YAEA Sbjct: 1 MSELGQVLQRAREEKGITLDDIQRITKIQRRYLEAIERGHFHVLPGHFYARAFIKSYAEA 60 Query: 61 VDVNPDELMEE-HGNVPAAPVETPMETVIQKRSRRPETERN----AKWLPTVLMWTFPVL 115 V ++P+ ++ ++PA P P E V + R RR + N +W+ L+ F L Sbjct: 61 VGLDPNHILNHFQSDLPAQP---PTEQVERLRRRRVASANNPLQAGRWVTKTLLVLFIAL 117 Query: 116 IIVVIYMYASSNMNKPEPDKAEPG 139 II VIY +A N N + + PG Sbjct: 118 IIGVIY-FAVVNNNGGQFTQPVPG 140 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.308 0.125 0.346 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,734,970,316 Number of extensions: 68170949 Number of successful extensions: 163973 Number of sequences better than 1.0e-05: 344 Number of HSP's gapped: 163950 Number of HSP's successfully gapped: 345 Length of query: 331 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 195 Effective length of database: 1,779,438,163 Effective search space: 346990441785 Effective search space used: 346990441785 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 131 (55.1 bits)