BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0012.p (171 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIK3.1 B3KIK3_9BACI Putative uncharacterized protein 280 4e-74 B1DLF4.1 B1DLF4_9BACL Putative uncharacterized protein 239 9e-62 C0ZCJ6.1 Y2528_BREBN UPF0234 protein BBR47_25280 207 4e-52 Q2B938.1 Q2B938_9BACI Putative uncharacterized protein 205 1e-51 A0RAZ4.1 A0RAZ4_BACAH Putative uncharacterized protein 201 3e-50 >B3KIK3.1 B3KIK3_9BACI Putative uncharacterized protein Length = 163 Score = 280 bits (715), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 136/163 (83%), Positives = 156/163 (95%) Query: 9 LSSESSFDIVSKMDMQELTNAVHQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDEYKLN 68 ++SESSFDIVSKMDMQELTNAV+Q E+EI+NRFDFK SKSSLKL+KDAL+IAS+DEYKLN Sbjct: 1 MASESSFDIVSKMDMQELTNAVNQAEREIENRFDFKGSKSSLKLDKDALVIASDDEYKLN 60 Query: 69 AVIDILQSKMVKRGITLKNLDFGKVEPASLGTVRQRLGLKQGIDHENAKKINILIRDSKL 128 AVIDILQ+KMVKRG++LKN+++GK+EPAS+GTVRQRL LKQGID EN+KKINILIRDSKL Sbjct: 61 AVIDILQTKMVKRGLSLKNVEYGKIEPASMGTVRQRLTLKQGIDQENSKKINILIRDSKL 120 Query: 129 KVKSQIQGDQIRVTGKSRDDLQQIIQILRKADLPLDLQFNNLK 171 KVKSQIQGDQIRVTGKS+DDLQQI+Q+LRKADL LDLQF N K Sbjct: 121 KVKSQIQGDQIRVTGKSKDDLQQIMQLLRKADLSLDLQFTNFK 163 >B1DLF4.1 B1DLF4_9BACL Putative uncharacterized protein Length = 163 Score = 239 bits (609), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 114/163 (69%), Positives = 143/163 (87%) Query: 9 LSSESSFDIVSKMDMQELTNAVHQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDEYKLN 68 +SSESSFDIVSKMDMQEL NA+ Q E+EI+ RFDFK SKSS+KLEK+ L++ S+D++KL Sbjct: 1 MSSESSFDIVSKMDMQELNNAIQQAEREIETRFDFKGSKSSIKLEKEELVVVSDDDFKLE 60 Query: 69 AVIDILQSKMVKRGITLKNLDFGKVEPASLGTVRQRLGLKQGIDHENAKKINILIRDSKL 128 +V+DIL+SKMVKRG+ +KNL++GKVE AS TVRQR+ LK GID +N+KKINILIRDSK+ Sbjct: 61 SVLDILKSKMVKRGVPIKNLEYGKVESASASTVRQRIKLKSGIDQDNSKKINILIRDSKI 120 Query: 129 KVKSQIQGDQIRVTGKSRDDLQQIIQILRKADLPLDLQFNNLK 171 KVKSQIQGDQIRVTGKSRDDLQ ++ +LR+ADL ++LQF N + Sbjct: 121 KVKSQIQGDQIRVTGKSRDDLQAVMALLREADLTVELQFTNYR 163 >C0ZCJ6.1 Y2528_BREBN UPF0234 protein BBR47_25280 Length = 163 Score = 207 bits (526), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 102/163 (62%), Positives = 134/163 (82%) Query: 9 LSSESSFDIVSKMDMQELTNAVHQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDEYKLN 68 +S ESSFDIVSK+++ E+ NA+ KEI+NRFDFK SKSS+ LEK+ L++ S+D++KL+ Sbjct: 1 MSKESSFDIVSKVELAEVNNAIQTALKEIENRFDFKGSKSSISLEKEELVLVSDDDFKLS 60 Query: 69 AVIDILQSKMVKRGITLKNLDFGKVEPASLGTVRQRLGLKQGIDHENAKKINILIRDSKL 128 V DIL K+VKR + +KNLD+GK+EPA+ GTVRQR L QGID +NAKKIN +I+D+ L Sbjct: 61 QVKDILLGKLVKRDVPIKNLDYGKIEPAAGGTVRQRAKLVQGIDKDNAKKINSIIKDTGL 120 Query: 129 KVKSQIQGDQIRVTGKSRDDLQQIIQILRKADLPLDLQFNNLK 171 KVK+QIQ DQIRVTGKS+D+LQQII +RKADLPL++QF N + Sbjct: 121 KVKTQIQDDQIRVTGKSKDELQQIINAIRKADLPLEVQFINYR 163 >Q2B938.1 Q2B938_9BACI Putative uncharacterized protein Length = 163 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/163 (61%), Positives = 132/163 (80%) Query: 9 LSSESSFDIVSKMDMQELTNAVHQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDEYKLN 68 +S ESSFDIVSK+D+ E+TNA+ KE+ R+DFK SKS + L+K+ L++ S+DEYKL+ Sbjct: 1 MSKESSFDIVSKVDLSEVTNAISIAMKEVKTRYDFKGSKSDITLDKEELVLISDDEYKLD 60 Query: 69 AVIDILQSKMVKRGITLKNLDFGKVEPASLGTVRQRLGLKQGIDHENAKKINILIRDSKL 128 + D+L SKM+KRGI +KNLD+GKVE AS GTVRQR L QGID +NAKKIN LI++S L Sbjct: 61 QLKDVLLSKMIKRGIPIKNLDYGKVEAASGGTVRQRAKLMQGIDKDNAKKINTLIKNSGL 120 Query: 129 KVKSQIQGDQIRVTGKSRDDLQQIIQILRKADLPLDLQFNNLK 171 KVKSQ+Q DQ+RVTGK+RDDLQQ+I +R+ADL +D+QF N + Sbjct: 121 KVKSQVQDDQVRVTGKNRDDLQQVIAAVREADLTVDVQFINYR 163 >A0RAZ4.1 A0RAZ4_BACAH Putative uncharacterized protein Length = 168 Score = 201 bits (510), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 98/167 (58%), Positives = 133/167 (79%) Query: 5 EVDVLSSESSFDIVSKMDMQELTNAVHQTEKEIDNRFDFKNSKSSLKLEKDALIIASEDE 64 EV ++ +SSFDIVSK+++ E+TNA++ KEI NR+DFK SKS +KLEK+ L++ S+DE Sbjct: 2 EVLTMAKDSSFDIVSKVELPEVTNAINTALKEIQNRYDFKGSKSDIKLEKEVLVLTSDDE 61 Query: 65 YKLNAVIDILQSKMVKRGITLKNLDFGKVEPASLGTVRQRLGLKQGIDHENAKKINILIR 124 +KL V D+L SK+VKR + +KNLD+GKVE A+ TVRQR L+QGID +NAKKIN +I+ Sbjct: 62 FKLEQVKDVLISKLVKRNVPIKNLDYGKVEAAAGNTVRQRATLQQGIDKDNAKKINNIIK 121 Query: 125 DSKLKVKSQIQGDQIRVTGKSRDDLQQIIQILRKADLPLDLQFNNLK 171 + KLKVK+Q+Q DQ+RVT KSRDDLQ +I +R ADLP+D+QF N + Sbjct: 122 EMKLKVKTQVQDDQVRVTAKSRDDLQAVIAAVRSADLPIDVQFINYR 168 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.343 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 827,680,354 Number of extensions: 30004845 Number of successful extensions: 83355 Number of sequences better than 1.0e-05: 744 Number of HSP's gapped: 82650 Number of HSP's successfully gapped: 744 Length of query: 171 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 45 Effective length of database: 1,873,648,313 Effective search space: 84314174085 Effective search space used: 84314174085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 126 (53.1 bits)