BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0010.p (429 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIK5.1 B3KIK5_9BACI Competence/damage-inducible protein CinA 584 e-165 B1DLF2.1 B1DLF2_9BACL Competence/damage-inducible protein CinA 459 e-127 C2MPB2.1 C2MPB2_BACCE Competence-damage inducible protein 378 e-103 C2S7H8.1 C2S7H8_BACCE Competence-damage inducible protein 377 e-102 B7HLB5.1 CINA_BACC7 Putative competence-damage inducible protein 377 e-102 >B3KIK5.1 B3KIK5_9BACI Competence/damage-inducible protein CinA Length = 420 Score = 584 bits (1506), Expect = e-165, Method: Compositional matrix adjust. Identities = 278/405 (68%), Positives = 339/405 (83%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 MKAEIIAVGTELLLGQIVN+NAQ+LS +LA++GIDV++QTVVGDN RL++A+ ++ SRA Sbjct: 1 MKAEIIAVGTELLLGQIVNTNAQYLSRQLASMGIDVYYQTVVGDNLERLKEALRLSSSRA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D++L +GG+GPT+DDLTKDALA+ L RSLHID++AMD ++RFF ER VMTENNR+QAL Sbjct: 61 DIVLLSGGLGPTQDDLTKDALASFLNRSLHIDRMAMDRIERFFHERGSVMTENNRRQALA 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 I+G TPLPNET +YIVLPGPP+E+ PMF +AKPWL QH LT E+PIY Sbjct: 121 IEGGTPLPNETGLAVGNAVSYEGTHYIVLPGPPKELMPMFEQEAKPWLLQHVLTDELPIY 180 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 SKMLKFAGIGES L+ +L DLI Q+DPTIA YAK+GEVTVRISTKA SE EAM +L L Sbjct: 181 SKMLKFAGIGESALDQRLEDLITAQTDPTIALYAKDGEVTVRISTKASSESEAMVRLNEL 240 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E IQE PE MYAN DVP+E++IVD MAD TLSAAESCTGGL+ E++T+IPGSASMF Sbjct: 241 EARIQERGPEFMYANEDVPIEKVIVDMMADRSWTLSAAESCTGGLVAETLTSIPGSASMF 300 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 LGGI+CY+N++K+KL+++P ALLEG DAPGAVS EVAE LAD VRM+ DSDFGLSVTGVA Sbjct: 301 LGGIICYTNQIKEKLVHIPHALLEGDDAPGAVSAEVAEALADHVRMVTDSDFGLSVTGVA 360 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVKS 405 GPGY+ERKP+GLV++GL++RG+ T+V+ELNL+G RE IRLR K+ Sbjct: 361 GPGYAERKPIGLVYIGLSQRGKETEVHELNLQGNRETIRLRATKA 405 >B1DLF2.1 B1DLF2_9BACL Competence/damage-inducible protein CinA Length = 416 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 230/405 (56%), Positives = 297/405 (73%), Gaps = 1/405 (0%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 MKAEIIAVGTELLLGQIVN+NAQFLS +LA+LGIDV+FQTVVGDN +R++QA+EIAR RA Sbjct: 1 MKAEIIAVGTELLLGQIVNTNAQFLSGKLASLGIDVYFQTVVGDNPNRIRQAVEIARQRA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTKD LAA L RSL + Q +MD +++ F R I M E+NR+QAL+ Sbjct: 61 DLLVFTGGLGPTQDDLTKDVLAAYLNRSLSLHQPSMDKIEQMFSSRGIHMVESNRRQALM 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 IDG+ P+ NE +Y++LPGPPREMKPM G A WL+ L E P+Y Sbjct: 121 IDGSAPIDNEAGLAVGNGLSEDGTHYLLLPGPPREMKPMMEGPASEWLRS-ILGAEEPLY 179 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L FAGIGES LE KLIDLI QSDPTIAPYAKEGEV +R+STKA +E +A KL+ Sbjct: 180 SRLLMFAGIGESTLEAKLIDLIEAQSDPTIAPYAKEGEVAIRVSTKAANETDAAVKLDQT 239 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 I++ + EH++A ++ LE+ +V + + LS AES +GGLL E IT IPGS+ + Sbjct: 240 VDAIKQRVGEHLFAQDEITLEEQVVQLLRTSRRKLSTAESISGGLLAELITGIPGSSGEY 299 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG+V Y+NEMK KLL +P A LEG APGA+S A ++A++ I DSDFG+S+TGVA Sbjct: 300 SGGVVTYTNEMKHKLLGIPMAQLEGDGAPGAISESTAAMMAERAMQIGDSDFGVSLTGVA 359 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVKS 405 GP +E KPVGLV+ +AERG+ T V+ + GTR IR+R VK+ Sbjct: 360 GPAQAEGKPVGLVYYAVAERGKATSVFTGHFSGTRAIIRIRAVKA 404 >C2MPB2.1 C2MPB2_BACCE Competence-damage inducible protein Length = 412 Score = 378 bits (970), Expect = e-103, Method: Compositional matrix adjust. Identities = 198/404 (49%), Positives = 270/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQQAIE+A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +A+SL L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DMLIFTGGLGPTKDDLTKETIASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 +DGAT N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNAHEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + E Y L ++ + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L+VP +L GAVS+E A LA+ VR + +D G+S TGVA Sbjct: 299 KGGVICYHNDVKQHVLHVPEEVL---STDGAVSKECARYLAENVRELLKADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VFVGLA + PT V+ LNL G+R+ IR R+ K Sbjct: 356 GPDASEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAK 399 >C2S7H8.1 C2S7H8_BACCE Competence-damage inducible protein Length = 412 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/404 (49%), Positives = 270/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQQAIE+A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +A+SL L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DMLIFTGGLGPTKDDLTKETIASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 +DGAT N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVHEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + E Y L ++ + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L+VP +L GAVS+E A LA+ VR + +D G+S TGVA Sbjct: 299 KGGVICYHNDVKQHVLHVPEEVL---STDGAVSKECARYLAENVRELLKADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VFVGLA + PT V+ LNL G+R+ IR R+ K Sbjct: 356 GPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAK 399 >B7HLB5.1 CINA_BACC7 Putative competence-damage inducible protein Length = 412 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 198/404 (49%), Positives = 270/404 (66%), Gaps = 5/404 (1%) Query: 1 MKAEIIAVGTELLLGQIVNSNAQFLSLELAALGIDVFFQTVVGDNSSRLQQAIEIARSRA 60 M AEIIAVGTELLLGQI N+NAQFLS +LA++GI+V++ TVVGDN+ RLQQAIE+A RA Sbjct: 1 MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERA 60 Query: 61 DVILFTGGIGPTEDDLTKDALAASLGRSLHIDQLAMDHVQRFFDERKIVMTENNRKQALI 120 D+++FTGG+GPT+DDLTK+ +A+SL L D+ A+ + +F TENN+KQAL+ Sbjct: 61 DMLIFTGGLGPTKDDLTKETIASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALV 120 Query: 121 IDGATPLPNETXXXXXXXXXXXXKYYIVLPGPPREMKPMFTGQAKPWLQQHALTGEMPIY 180 +DGAT N+ K YI+LPGPP+EMKPM+ +P+L+ TGE IY Sbjct: 121 LDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMYVSYVEPFLRNFT-TGE-NIY 178 Query: 181 SKMLKFAGIGESLLEDKLIDLIRNQSDPTIAPYAKEGEVTVRISTKAPSEREAMQKLEVL 240 S++L+F GIGES LE K+ DLI Q++PTIAP A +GEVT+R++ K + EA + ++ + Sbjct: 179 SRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVHEAEKLIQHV 238 Query: 241 ETTIQEILPEHMYANIDVPLEQLIVDWMADAGLTLSAAESCTGGLLMESITNIPGSASMF 300 E I E + E Y L ++ + GLTL+ AES TGGL +T G +S+F Sbjct: 239 EDLILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVF 298 Query: 301 LGGIVCYSNEMKKKLLNVPAALLEGPDAPGAVSREVAEVLADQVRMIADSDFGLSVTGVA 360 GG++CY N++K+ +L+VP +L GAVS+E A LA+ VR + +D G+S TGVA Sbjct: 299 KGGVICYHNDVKQHVLHVPEEVL---STDGAVSKECARYLAENVRELLKADIGISFTGVA 355 Query: 361 GPGYSERKPVGLVFVGLAERGRPTQVYELNLKGTRENIRLRTVK 404 GP SE K G VFVGLA + PT V+ LNL G+R+ IR R+ K Sbjct: 356 GPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAK 399 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,309,263,826 Number of extensions: 92255236 Number of successful extensions: 254883 Number of sequences better than 1.0e-05: 1834 Number of HSP's gapped: 251817 Number of HSP's successfully gapped: 1835 Length of query: 429 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 290 Effective length of database: 1,751,175,118 Effective search space: 507840784220 Effective search space used: 507840784220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)