BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0009.p (347 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLF1.1 B1DLF1_9BACL Protein recA 542 e-152 B3KIK6.1 B3KIK6_9BACI Protein recA 536 e-150 P62211.1 RECA_BACLI Protein recA 524 e-147 Q65JF2.1 RECA_BACLD Protein recA 524 e-147 P16971.2 RECA_BACSU Protein recA 516 e-144 >B1DLF1.1 B1DLF1_9BACL Protein recA Length = 351 Score = 542 bits (1396), Expect = e-152, Method: Compositional matrix adjust. Identities = 264/321 (82%), Positives = 289/321 (90%), Gaps = 2/321 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MALRQIEKQFGKGS+MKLGES HM+VE VPS P+GRIIE YGPESSG Sbjct: 10 MALRQIEKQFGKGSIMKLGESTHMQVETVPSGSIALDIALGIGGLPRGRIIECYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ++GGQAAFIDAEHALDP YA+ LGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQRIGGQAAFIDAEHALDPLYASKLGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDIIV+DS AALVPKAEIEGDMGDSHVGLQARLMSQALRKL GAI+KS TIA Sbjct: 130 LVRSGAVDIIVIDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLGGAISKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQLREK+GVMFGNPETTPGGRALKFYSSVRL+VRR+E+IK GND+VGNRT+IKVVKN Sbjct: 188 IFINQLREKVGVMFGNPETTPGGRALKFYSSVRLEVRRIETIKQGNDMVGNRTRIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPFKQA++DIMYGEGIS+EGSLVDIG EMDIV KSGAW+SY G+RLGQGREN+KQFL Sbjct: 248 KVAPPFKQAEIDIMYGEGISREGSLVDIGVEMDIVQKSGAWFSYNGDRLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNLS 321 K+H ++A +IE +IRE SNLS Sbjct: 308 KDHPEVAAVIEKQIREQSNLS 328 >B3KIK6.1 B3KIK6_9BACI Protein recA Length = 329 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 263/313 (84%), Positives = 285/313 (91%), Gaps = 2/313 (0%) Query: 16 MKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSGKTTVALHAIAEVQKV 75 MKLGES HM+VE+VPS P+GRIIEVYGPESSGKTTVALHAIAEVQK Sbjct: 1 MKLGESTHMQVEIVPSGSLALDIALGTGGLPRGRIIEVYGPESSGKTTVALHAIAEVQKA 60 Query: 76 GGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSX 135 GGQAAFIDAEHALDP YAN LGVNIDELLLSQPDTGEQALEIAEALVRSGAVD+IV+DS Sbjct: 61 GGQAAFIDAEHALDPSYANKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDVIVIDSV 120 Query: 136 XXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIAIFINQLREKIGVMFG 195 AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIAIFINQLREK+GVMFG Sbjct: 121 --AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFG 178 Query: 196 NPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKNKVAPPFKQADVDIMY 255 NPETTPGGRALKFYS+VRLDVRR+ESIKMGNDVVGNRT+IKVVKNKVAPPFKQA++DIMY Sbjct: 179 NPETTPGGRALKFYSTVRLDVRRIESIKMGNDVVGNRTRIKVVKNKVAPPFKQAELDIMY 238 Query: 256 GEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFLKEHQDIALLIENKIR 315 GEGIS+EGSL+DIGTE+DIV+KSGAWYSY G+RLGQGREN+KQFLKE+ +IA +IENKIR Sbjct: 239 GEGISREGSLIDIGTELDIVDKSGAWYSYAGDRLGQGRENAKQFLKENPEIASVIENKIR 298 Query: 316 EASNLSTIVAAPT 328 EASNL+T V P+ Sbjct: 299 EASNLTTAVPEPS 311 >P62211.1 RECA_BACLI Protein recA Length = 348 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/327 (78%), Positives = 284/327 (86%), Gaps = 2/327 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ VPS P+GRIIEVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDI+V+DS AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAVDIVVIDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GNDV+GN+TKIKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++D+GTE+DIV KSGAWYSY+ ERLGQGREN+KQFL Sbjct: 248 KVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNLSTIVAAP 327 KE++DI L+I+ +IRE L T AAP Sbjct: 308 KENKDILLMIQEQIREHYGLDTGGAAP 334 >Q65JF2.1 RECA_BACLD Protein recA Length = 348 Score = 524 bits (1349), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/327 (78%), Positives = 284/327 (86%), Gaps = 2/327 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ VPS P+GRIIEVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEQTETRISTVPSGSLALDAALGVGGYPRGRIIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNIDELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDI+V+DS AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAVDIVVIDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GNDV+GN+TKIKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++D+GTE+DIV KSGAWYSY+ ERLGQGREN+KQFL Sbjct: 248 KVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGAWYSYQEERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNLSTIVAAP 327 KE++DI L+I+ +IRE L T AAP Sbjct: 308 KENKDILLMIQEQIREHYGLDTGGAAP 334 >P16971.2 RECA_BACSU Protein recA Length = 348 Score = 516 bits (1328), Expect = e-144, Method: Compositional matrix adjust. Identities = 253/320 (79%), Positives = 280/320 (87%), Gaps = 2/320 (0%) Query: 1 MALRQIEKQFGKGSVMKLGESNHMKVEVVPSXXXXXXXXXXXXXXPKGRIIEVYGPESSG 60 MAL+QIEKQFGKGS+MKLGE ++ VPS P+GRIIEVYGPESSG Sbjct: 10 MALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSG 69 Query: 61 KTTVALHAIAEVQKVGGQAAFIDAEHALDPKYANALGVNIDELLLSQPDTGEQALEIAEA 120 KTTVALHAIAEVQ+ GGQAAFIDAEHALDP YA LGVNI+ELLLSQPDTGEQALEIAEA Sbjct: 70 KTTVALHAIAEVQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEA 129 Query: 121 LVRSGAVDIIVVDSXXXAALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSNTIA 180 LVRSGAVDI+VVDS AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKS TIA Sbjct: 130 LVRSGAVDIVVVDSV--AALVPKAEIEGDMGDSHVGLQARLMSQALRKLSGAINKSKTIA 187 Query: 181 IFINQLREKIGVMFGNPETTPGGRALKFYSSVRLDVRRVESIKMGNDVVGNRTKIKVVKN 240 IFINQ+REK+GVMFGNPETTPGGRALKFYSSVRL+VRR E +K GNDV+GN+TKIKVVKN Sbjct: 188 IFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKTKIKVVKN 247 Query: 241 KVAPPFKQADVDIMYGEGISKEGSLVDIGTEMDIVNKSGAWYSYEGERLGQGRENSKQFL 300 KVAPPF+ A+VDIMYGEGISKEG ++D+GTE+DIV KSG+WYSYE ERLGQGREN+KQFL Sbjct: 248 KVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFL 307 Query: 301 KEHQDIALLIENKIREASNL 320 KE++DI L+I+ +IRE L Sbjct: 308 KENKDIMLMIQEQIREHYGL 327 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.132 0.360 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,732,109,765 Number of extensions: 67280042 Number of successful extensions: 214033 Number of sequences better than 1.0e-05: 5228 Number of HSP's gapped: 207185 Number of HSP's successfully gapped: 5244 Length of query: 347 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 211 Effective length of database: 1,779,438,163 Effective search space: 375461452393 Effective search space used: 375461452393 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)