BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0280.0008.p (244 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIK7.1 B3KIK7_9BACI Regulatory protein RecX 241 4e-62 B1DLF0.1 B1DLF0_9BACL Regulatory protein RecX 125 4e-27 C0ZF13.1 C0ZF13_BREBN Regulatory protein RecX 117 6e-25 C0UUB3.1 C0UUB3_9BACT Uncharacterized conserved protein 99 4e-19 B1HUQ7.1 B1HUQ7_LYSSC Regulatory protein 94 1e-17 >B3KIK7.1 B3KIK7_9BACI Regulatory protein RecX Length = 245 Score = 241 bits (615), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 124/223 (55%), Positives = 153/223 (68%), Gaps = 1/223 (0%) Query: 6 NPEPEGQ-DEQVLADFPADEQLVITRVERQKKSDHRYIIHFGAYQMTVHEDVMIKYRMIT 64 N E GQ D + FP DE LVIT VE KK HRY I FG Y MTVHEDVM+KYRM+ Sbjct: 5 NKEMSGQADSSGIGHFPEDEDLVITSVEMLKKPKHRYQIAFGPYLMTVHEDVMLKYRMLK 64 Query: 65 GSSFMKADLEEIVVADERQRAYVEGLRYLERKPRTSQEMARRLREKEIGETIIAEVXXXX 124 G+ F K +L+EIVVADERQRAYVE L +L RKPRT+QE+ +RL++K + + Sbjct: 65 GNVFRKEELQEIVVADERQRAYVEALNHLARKPRTTQEITQRLQQKGFEPSSVETTLERL 124 Query: 125 XXXXXXXXXXYAKQWAEQRITSQRKGKLWIRQELREKGIDKSLISEALEHITPEQELESA 184 YAK WAEQR+TS +KG+LW++QELR+KGI LISEAL I+ E ELES Sbjct: 125 EKDKLLDDALYAKMWAEQRMTSHKKGRLWVKQELRQKGIGTELISEALGEISAESELESC 184 Query: 185 LQTGRKKWNLIRGDVNDKRRKTGAFLMRRGFSGDMVRQVLNIL 227 L GRKKW +G++ D++RKTGA+LMRRGF G+ VRQ L +L Sbjct: 185 LAVGRKKWQQTQGELLDRKRKTGAYLMRRGFGGEPVRQALKLL 227 >B1DLF0.1 B1DLF0_9BACL Regulatory protein RecX Length = 226 Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 74/199 (37%), Positives = 116/199 (58%), Gaps = 3/199 (1%) Query: 28 ITRVERQKKSDHRYIIHFGAYQ---MTVHEDVMIKYRMITGSSFMKADLEEIVVADERQR 84 I+ VE+ +K RY I+ + +VHED++IK+R++ G+S ++ EI D R R Sbjct: 5 ISAVEQDRKERKRYNIYTDGLEKPLFSVHEDLLIKHRLLKGNSLTTEEIAEITEEDGRYR 64 Query: 85 AYVEGLRYLERKPRTSQEMARRLREKEIGETIIAEVXXXXXXXXXXXXXXYAKQWAEQRI 144 AY + YL K RT +++ + L +E+ IA YA+Q+A QRI Sbjct: 65 AYALAIYYLGFKARTRKQIEQYLARRELEPESIAYALERLESEHIVDDEEYARQFARQRI 124 Query: 145 TSQRKGKLWIRQELREKGIDKSLISEALEHITPEQELESALQTGRKKWNLIRGDVNDKRR 204 + +KG+ WI+ EL+++G+ SEALE I + EL SA+Q +KKW ++G+ +KR+ Sbjct: 125 RNSQKGRRWIKLELQQRGVTNQAASEALEAIDRDDELASAIQAAKKKWRSLKGENREKRQ 184 Query: 205 KTGAFLMRRGFSGDMVRQV 223 K +FLMRRGF D+V+Q Sbjct: 185 KLLSFLMRRGFPSDVVKQA 203 >C0ZF13.1 C0ZF13_BREBN Regulatory protein RecX Length = 213 Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 115/204 (56%), Gaps = 2/204 (0%) Query: 27 VITRVERQKKSDHRYIIHF-GAYQMTVHEDVMIKYRMITGSSFMKADLEEIVVADERQRA 85 +IT V R K RY I G Y +TVHED+++KY + G+ +A E+++A+E+ +A Sbjct: 5 LITAVHRDIKQKQRYHIDVEGEYAITVHEDILVKYNLFKGTELDEAFCREVLIAEEKHKA 64 Query: 86 YVEGLRYLERKPRTSQEMARRLREKEIGETIIAEVXXXXXXXXXXXXXXYAKQWAEQRIT 145 Y+ LRYL +PRTS ++ L EK I E+ +AKQW ++R+ Sbjct: 65 YLGALRYLGIRPRTSSQLHSYLVEKGFSTQIAEEICQRCMEHGYIDDEAFAKQWVDERLR 124 Query: 146 SQRKGKLWIRQELREKGIDKSLISEALEHITPEQELESALQTGRKKWNLIRGDVN-DKRR 204 + + +R EL ++G+D++++ +A+ ++ + EL++A KK I G N D+ R Sbjct: 125 LKPRSPYMLRMELTQRGVDRAIVEDAVRGVSRQAELDAARALIEKKVRRIEGAPNPDEER 184 Query: 205 KTGAFLMRRGFSGDMVRQVLNILR 228 K + LMR+GFS +++Q+ LR Sbjct: 185 KLLSMLMRKGFSHAIIQQMREELR 208 >C0UUB3.1 C0UUB3_9BACT Uncharacterized conserved protein Length = 253 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 109/221 (49%), Gaps = 2/221 (0%) Query: 9 PEGQDEQVLADFPADEQLVITRVERQKKSDHRYIIHF-GAYQMTVHEDVMIKYRMITGSS 67 P+ E +++LV+T +ERQK + +R+ I+ G Y ++ E + +YR+ G + Sbjct: 18 PDNNREGTPTSLNGEKKLVVTGIERQKGNRNRFSIYLNGRYAFSLSESLAWEYRIEEGKT 77 Query: 68 FMKADLEEIVVADERQRAYVEGLRYLERKPRTSQEMARRLREKEIGETIIAEVXXXXXXX 127 +A+++E+V D+ +A+ +R L +PR+ E+ +RLR K + E +I E Sbjct: 78 LTEAEIDELVHKDKFDKAFDAAVRLLAVRPRSESELIQRLRRKGVDENVIDEAIDKLRTL 137 Query: 128 XXXXXXXYAKQWAEQRITSQRKGKLWIRQELREKGIDKSLISEALEHITPEQELESALQT 187 +A+ W + R G ++ ELR+KG++ + E LE E E A + Sbjct: 138 GYVNDEDFARFWVQNREQFSPMGSRRLKFELRQKGVESDTVDEVLEDEVGPDEYELAYRA 197 Query: 188 GRKKWNLIRG-DVNDKRRKTGAFLMRRGFSGDMVRQVLNIL 227 R K G + D R+ G FL RRGF + +V+ L Sbjct: 198 ARSKLRSYTGLEYQDFYRRMGGFLSRRGFDYETSSKVIKQL 238 >B1HUQ7.1 B1HUQ7_LYSSC Regulatory protein Length = 270 Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 111/208 (53%), Gaps = 16/208 (7%) Query: 27 VITRVERQKKSDHRYIIHFGA-YQMTVHEDVMIKYRMITGSSFMKADLEEIVVADERQRA 85 +IT++ RQK + RY I+ Y V E +++++ + G + +++EI DE ++A Sbjct: 6 MITKIARQKNNPERYNIYLNEEYAFPVDEAILLQFSLTKGKVLDEFEIQEIAYEDEIRKA 65 Query: 86 YVEGLRYLERKPRTSQEMARRLREKEIGETIIAEVXXXXXXXXXXXXXXYAKQWAEQRIT 145 + +GL +L + R+ E+ ++L E GE ++ E Y+K + + Sbjct: 66 FNKGLNFLSYQMRSEHEVKKKLLTLEFGEAVVLEAIQKLKSYGFINDENYSKALLDTKKA 125 Query: 146 SQRKGKLWIRQELREKGIDKSLISEALEHITPEQELESALQTGRKKWNLIRGDVNDKRRK 205 + +KG IRQ+L +KGI+K+L E L + E++++ ALQ K +IR + +RK Sbjct: 126 TMKKGPRAIRQDLMKKGINKNLQDEVLATYSFEEQIKLALQLAEK---IIRSE----KRK 178 Query: 206 TGA--------FLMRRGFSGDMVRQVLN 225 T A +L+R+G++ +V +VLN Sbjct: 179 TPAQVKAKIQDYLLRKGYAFPIVEEVLN 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,231,232,433 Number of extensions: 44204964 Number of successful extensions: 120547 Number of sequences better than 1.0e-05: 314 Number of HSP's gapped: 120473 Number of HSP's successfully gapped: 314 Length of query: 244 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 112 Effective length of database: 1,817,122,223 Effective search space: 203517688976 Effective search space used: 203517688976 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)