BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0280.0005.p
         (86 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DLE6.1 B1DLE6_9BACL Stage V sporulation protein S                   163   4e-39
B3KIL0.1 B3KIL0_9BACI Stage V sporulation protein S                   163   5e-39
C1TIH9.1 C1TIH9_9FIRM Uncharacterized conserved protein               162   8e-39
C0ZF10.1 C0ZF10_BREBN Stage V sporulation protein S                   162   1e-38
C5D9G7.1 C5D9G7_9BACI Stage V sporulation protein S                   161   1e-38

>B1DLE6.1 B1DLE6_9BACL Stage V sporulation protein S
          Length = 86

 Score =  163 bits (413), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 86/86 (100%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVSAKSNPNSVAGALAGVLRERG+AELQAIGAGALNQA+KAVAIARGFVAPSGVDL
Sbjct: 1  MEVLKVSAKSNPNSVAGALAGVLRERGAAELQAIGAGALNQAIKAVAIARGFVAPSGVDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          IC+PAFTDIVIDGEDRTAIKLIVEPR
Sbjct: 61 ICVPAFTDIVIDGEDRTAIKLIVEPR 86


>B3KIL0.1 B3KIL0_9BACI Stage V sporulation protein S
          Length = 86

 Score =  163 bits (412), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/86 (96%), Positives = 85/86 (98%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVSAKSNPNSVAGALAGVLRERG AELQAIGAGALNQA+KAVAIARGFVAPSGVDL
Sbjct: 1  MEVLKVSAKSNPNSVAGALAGVLRERGGAELQAIGAGALNQAIKAVAIARGFVAPSGVDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          ICIPAFTDIVIDGEDRTAIKLIVEPR
Sbjct: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86


>C1TIH9.1 C1TIH9_9FIRM Uncharacterized conserved protein
          Length = 86

 Score =  162 bits (410), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 86/86 (100%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          MDVLKVSAKSNPNSVAGALAGVLRERG+AE+QAIGAGALNQAVKAVAIARGFVAPSGVDL
Sbjct: 1  MDVLKVSAKSNPNSVAGALAGVLRERGNAEIQAIGAGALNQAVKAVAIARGFVAPSGVDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          ICIPAFTDI+IDGE+RTAIKLIVEPR
Sbjct: 61 ICIPAFTDIMIDGEERTAIKLIVEPR 86


>C0ZF10.1 C0ZF10_BREBN Stage V sporulation protein S
          Length = 86

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 86/86 (100%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M+VLKVSAKSNPNSVAGALAGVLRERG+AE+QAIGAGALNQAVKAVAIARGFVAPSGVDL
Sbjct: 1  MEVLKVSAKSNPNSVAGALAGVLRERGAAEIQAIGAGALNQAVKAVAIARGFVAPSGVDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          ICIPAFTDIVIDGE+RTAIKLIVEPR
Sbjct: 61 ICIPAFTDIVIDGEERTAIKLIVEPR 86


>C5D9G7.1 C5D9G7_9BACI Stage V sporulation protein S
          Length = 86

 Score =  161 bits (408), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/86 (93%), Positives = 86/86 (100%)

Query: 1  MDVLKVSAKSNPNSVAGALAGVLRERGSAELQAIGAGALNQAVKAVAIARGFVAPSGVDL 60
          M++LKVSAKSNPNSVAGALAGVLRERGSAE+QAIGAGALNQAVKAVAIARGFVAPSG+DL
Sbjct: 1  MEILKVSAKSNPNSVAGALAGVLRERGSAEIQAIGAGALNQAVKAVAIARGFVAPSGMDL 60

Query: 61 ICIPAFTDIVIDGEDRTAIKLIVEPR 86
          ICIPAFTDI+IDGE+RTAIKLIVEPR
Sbjct: 61 ICIPAFTDIIIDGEERTAIKLIVEPR 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 449,418,386
Number of extensions: 15139717
Number of successful extensions: 51200
Number of sequences better than 1.0e-05: 322
Number of HSP's gapped: 51200
Number of HSP's successfully gapped: 322
Length of query: 86
Length of database: 3,060,696,203
Length adjustment: 56
Effective length of query: 30
Effective length of database: 2,533,119,363
Effective search space: 75993580890
Effective search space used: 75993580890
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)