BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0276.0006.p
         (100 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6U7.1 B3K6U7_9BACI Putative uncharacterized protein                138   1e-31
B1DG05.1 B1DG05_9BACL Putative uncharacterized protein                107   3e-22
A9VII5.1 A9VII5_BACWK Putative uncharacterized protein                 80   8e-14
Q6HHQ1.1 Q6HHQ1_BACHK Putative uncharacterized protein                 79   1e-13
C1EXX1.1 C1EXX1_BACC3 Putative uncharacterized protein                 79   1e-13

>B3K6U7.1 B3K6U7_9BACI Putative uncharacterized protein
          Length = 92

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 78/89 (87%)

Query: 10 VLSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAI 69
          VLSMDEI+NA+CLH AER+GV+  +V +ELSW+EDTGYTAEVWV GR+QYL+E+N+IEAI
Sbjct: 2  VLSMDEIVNAVCLHQAERRGVKPTDVSLELSWDEDTGYTAEVWVNGRTQYLIEANLIEAI 61

Query: 70 LRYLDGEYGIRAYREDVRLELDEEITAVV 98
          LRYL  EY IRAY E VRLEL++EI A+V
Sbjct: 62 LRYLHSEYNIRAYSEQVRLELEDEIIAIV 90


>B1DG05.1 B1DG05_9BACL Putative uncharacterized protein
          Length = 94

 Score =  107 bits (268), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 72/86 (83%)

Query: 8  LTVLSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIE 67
          +T +  DEIINA+CLHMA+R+GV+  +V+V+L+WEE+ G+TAEVWV GRSQY++E+N++E
Sbjct: 1  MTRIYTDEIINAVCLHMADRRGVQPSDVEVQLAWEEEYGFTAEVWVNGRSQYIIEANLLE 60

Query: 68 AILRYLDGEYGIRAYREDVRLELDEE 93
          AI +Y+  +Y  R +R +++L++DEE
Sbjct: 61 AIEQYMYRQYNRRVFRTNIKLDVDEE 86


>A9VII5.1 A9VII5_BACWK Putative uncharacterized protein
          Length = 102

 Score = 79.7 bits (195), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 62/83 (74%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCVYIAEKRQVGPEEVSVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY + ++   ++LELD+E
Sbjct: 66 LLLDREYNVNSFAARLQLELDDE 88


>Q6HHQ1.1 Q6HHQ1_BACHK Putative uncharacterized protein
          Length = 102

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 62/83 (74%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCIYIAEKRQVGPEEVLVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY + ++   ++LELD+E
Sbjct: 66 LLLDREYNVNSFAARLQLELDDE 88


>C1EXX1.1 C1EXX1_BACC3 Putative uncharacterized protein
          Length = 102

 Score = 79.0 bits (193), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 62/83 (74%)

Query: 11 LSMDEIINAICLHMAERKGVRVQEVQVELSWEEDTGYTAEVWVQGRSQYLVESNMIEAIL 70
          +S  E+INA+C+++AE++ V  +EV VEL +++D G++AEV V GR Q L+++N+IEA+ 
Sbjct: 6  ISEQELINALCIYIAEKRQVGPEEVLVELMYDDDYGFSAEVEVNGRQQILIQANLIEALR 65

Query: 71 RYLDGEYGIRAYREDVRLELDEE 93
            LD EY + ++   ++LELD+E
Sbjct: 66 LLLDREYNVNSFAARLQLELDDE 88


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.132    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 549,794,762
Number of extensions: 18887333
Number of successful extensions: 67387
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 67386
Number of HSP's successfully gapped: 81
Length of query: 100
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 31
Effective length of database: 2,410,646,168
Effective search space: 74730031208
Effective search space used: 74730031208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)