BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0276.0005.p
         (138 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K6U6.1 B3K6U6_9BACI Putative uncharacterized protein                 79   2e-13
B1DG06.1 B1DG06_9BACL Putative uncharacterized protein                 53   9e-06

>B3K6U6.1 B3K6U6_9BACI Putative uncharacterized protein
          Length = 147

 Score = 78.6 bits (192), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/120 (36%), Positives = 64/120 (53%), Gaps = 1/120 (0%)

Query: 1   MMILMAFTLFFAVTAPDFADAXXXXXXXXXXXXXYTTTPKKSTTNNVKQSDSSXXXXXXX 60
           + IL+A TLFF    PD ADA             Y +TPKK+ TNNV+Q+++        
Sbjct: 5   LTILVAITLFFVALTPDSADARRGGGGFKSGTKSYNSTPKKNDTNNVQQTNNRSNTGAAA 64

Query: 61  XXXXNRGFFSGGSLMKGLMIGGIXXXXXXXXXXXXXXXXNLLGFAVNMLAIYLVVMLIMS 120
                 GFFSGGSLMKGLMIGG+                 ++G  +N++AI+ ++M++M+
Sbjct: 65  NTKK-PGFFSGGSLMKGLMIGGLAGLLFGSMFAGMGFMGEIMGLLINLIAIWALIMIVMA 123


>B1DG06.1 B1DG06_9BACL Putative uncharacterized protein
          Length = 142

 Score = 53.1 bits (126), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 1   MMILMAFTLFFAVTAPDFADAXXXXXXXXXXXXXYTTTPKKSTTNNVKQSDSSXXX---- 56
           ++++MAF LF        ADA             YT TPKK    NV++S S        
Sbjct: 5   LLVIMAFALFLTFGLGQ-ADAAKRGGGFKSPKQSYTQTPKKQA--NVQESTSGTKTGATT 61

Query: 57  XXXXXXXXNRGFFSGGSLMKGLMIGGIXXXXXXXXXXXXXXXXNLLGFAVNMLAIYLVVM 116
                   N+GFFSGG  MKG++IGG+                   G  +N++AI+++V 
Sbjct: 62  NKTGATTTNKGFFSGGGFMKGMLIGGLAGMLFGGLLGNMGGMGQFFGLLINLIAIFVLVR 121

Query: 117 LIMSFF 122
           +++S F
Sbjct: 122 IVISLF 127


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.329    0.139    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 385,053,044
Number of extensions: 8197930
Number of successful extensions: 10797
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10798
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 3,060,696,203
Length adjustment: 102
Effective length of query: 36
Effective length of database: 2,099,752,673
Effective search space: 75591096228
Effective search space used: 75591096228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 125 (52.8 bits)