BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0276.0003.p
         (241 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A3DHT3.1 A3DHT3_CLOTH Putative uncharacterized protein                117   7e-25
B4BDT2.1 B4BDT2_CLOTM Putative uncharacterized protein                117   7e-25

>A3DHT3.1 A3DHT3_CLOTH Putative uncharacterized protein
          Length = 242

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 1   VKKFVIGFVSGAVLFGGISAFAASGLVGQKVQSVVMIEKSGVKI-ADGAV--INGAIYAP 57
           +KKF+ GF++  VL  G    A S      +++   +  +G K  +D  +  I G+ Y P
Sbjct: 1   MKKFIAGFLTCLVLMSGFYVLAESQQ-WTALRATFDVYVNGKKFESDKPIVAIEGSTYLP 59

Query: 58  IQALAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDIGKTVNFNYKNGGYSGTV 117
           ++A+                                     +  +T+        Y+  V
Sbjct: 60  LKAIGDVLGVPVQWNEKLRRVEVGSISNTKNEYSFNNPAPLNTIQTITKESFLQKYTAEV 119

Query: 118 AVTQVLRGAEAWEAAKEQYNDFASEPDAGYEYLFAKIKVSILKVDKAGATADLNQFDYKL 177
            V +++RG  A +   +  N F   P  GYEYL AK+ V ++ +D+   T  L+   + L
Sbjct: 120 VVKEIVRGETANKMVADA-NIFNDPPKEGYEYLLAKVYVKLISIDEGALT--LSPLQFSL 176

Query: 178 ISTSGTEYGADIVLSPEPSISTKVYAGSSHEGWVGYKVKTDDASPLIAFSRNYDGTGGVW 237
           IS+ G EY    V+ PEP I+T +Y G+SHEGWV ++VK DD  P I F + YDGTGG W
Sbjct: 177 ISSDGKEYDMPFVVLPEPEITTTLYPGASHEGWVVFEVKKDDLKPKIVFEKQYDGTGGAW 236

Query: 238 FK 239
           FK
Sbjct: 237 FK 238


>B4BDT2.1 B4BDT2_CLOTM Putative uncharacterized protein
          Length = 242

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 7/242 (2%)

Query: 1   VKKFVIGFVSGAVLFGGISAFAASGLVGQKVQSVVMIEKSGVKI-ADGAV--INGAIYAP 57
           +KKF+ GF++  VL  G    A S      +++   +  +G K  +D  +  I G+ Y P
Sbjct: 1   MKKFIAGFLTCLVLMSGFYVLAESQQ-WTALRATFDVYVNGKKFESDKPIVAIEGSTYLP 59

Query: 58  IQALAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDIGKTVNFNYKNGGYSGTV 117
           ++A+                                     +  +T+        Y+  V
Sbjct: 60  LKAIGDVLGVPVQWNEKLRRVEVGSISNTKNEYSFNNPAPLNTIQTITKESFLQKYTAEV 119

Query: 118 AVTQVLRGAEAWEAAKEQYNDFASEPDAGYEYLFAKIKVSILKVDKAGATADLNQFDYKL 177
            V +++RG  A +   +  N F   P  GYEYL AK+ V ++ +D+   T  L+   + L
Sbjct: 120 VVKEIVRGETANKMVADA-NIFNDPPKEGYEYLLAKVYVKLISIDEGALT--LSPLQFSL 176

Query: 178 ISTSGTEYGADIVLSPEPSISTKVYAGSSHEGWVGYKVKTDDASPLIAFSRNYDGTGGVW 237
           IS+ G EY    V+ PEP I+T +Y G+SHEGWV ++VK DD  P I F + YDGTGG W
Sbjct: 177 ISSDGKEYDMPFVVLPEPEITTTLYPGASHEGWVVFEVKKDDLKPKIVFEKQYDGTGGAW 236

Query: 238 FK 239
           FK
Sbjct: 237 FK 238


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.314    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,250,281,658
Number of extensions: 45210336
Number of successful extensions: 85894
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 85894
Number of HSP's successfully gapped: 2
Length of query: 241
Length of database: 3,060,696,203
Length adjustment: 132
Effective length of query: 109
Effective length of database: 1,817,122,223
Effective search space: 198066322307
Effective search space used: 198066322307
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)