BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0012.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3I5H4.1 A3I5H4_9BACI ABC transporter, ATP-binding protein 347 6e-94 B3KC25.1 B3KC25_9BACI ABC transporter related 345 2e-93 A8SR45.1 A8SR45_9FIRM Putative uncharacterized protein 224 4e-57 A8RLG0.1 A8RLG0_9CLOT Putative uncharacterized protein 209 2e-52 C0FD80.1 C0FD80_9CLOT Putative uncharacterized protein 207 1e-51 >A3I5H4.1 A3I5H4_9BACI ABC transporter, ATP-binding protein Length = 252 Score = 347 bits (890), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 155/249 (62%), Positives = 203/249 (81%) Query: 1 MTKTAIIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLD 60 M K +I+ +N+CKT+STGSEQFHAI+N++++I++GDFTVIMG+SGSGKSTLLYLLSGLD Sbjct: 1 MEKEVLIRAQNVCKTFSTGSEQFHAIKNMNIDIYKGDFTVIMGNSGSGKSTLLYLLSGLD 60 Query: 61 SVTAGEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPK 120 ++TAGE+YF ++LD F+E++LA FR+QK+GYIYQNSNL+PDLTL ENIALPGY+A T K Sbjct: 61 TITAGEIYFQGEKLDTFSERKLASFRSQKVGYIYQNSNLIPDLTLLENIALPGYIAKTNK 120 Query: 121 REVKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYD 180 + + Q+ L+ M +D QR RLP++ SGG N PEV+FADEPTGSLNYD Sbjct: 121 KVIIQKAEQLLHLMGLDKQRNRLPSQTSGGQQQRAAIARALVNNPEVLFADEPTGSLNYD 180 Query: 181 QGVAVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDR 240 QGVAVLD+LT++N GQS+VM+THDIKAACRANRLI I+DGK+ G+L F+ + +Q+R Sbjct: 181 QGVAVLDILTNLNRKGQSVVMITHDIKAACRANRLIIIQDGKIDGVLNFEKYDHLNIQER 240 Query: 241 EALIFSYIS 249 E +IFSY++ Sbjct: 241 EHIIFSYVA 249 >B3KC25.1 B3KC25_9BACI ABC transporter related Length = 254 Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 160/250 (64%), Positives = 199/250 (79%) Query: 2 TKTAIIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDS 61 TKT ++Q NLCKTY+TG EQ+HA+RN+DL+I+ GDFTVIMGDSGSGKSTLLYLLSGLD+ Sbjct: 4 TKTIMLQASNLCKTYTTGKEQYHAVRNVDLSIYAGDFTVIMGDSGSGKSTLLYLLSGLDA 63 Query: 62 VTAGEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPKR 121 VTAGEV+ QRLD+F+ KELA FRA +IG+IYQNSNLVPDLTLF+N+ALPGY+A K Sbjct: 64 VTAGEVHLQGQRLDQFSAKELARFRADQIGFIYQNSNLVPDLTLFDNVALPGYIANRDKE 123 Query: 122 EVKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQ 181 VKQR LM ++ ++ Q RLP++VSGG N P++IFADEPTGSLNY+Q Sbjct: 124 AVKQRANDLMTSLHLEKQGTRLPSQVSGGQQQRAAIARALINNPDMIFADEPTGSLNYEQ 183 Query: 182 GVAVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDRE 241 GV VLD+L+ MN GQSIVMVTHD+KAACR NRLI+IRDGK+GG L+ + P+ +RE Sbjct: 184 GVTVLDILSRMNAEGQSIVMVTHDMKAACRGNRLIYIRDGKIGGTLDMGPYVPELASERE 243 Query: 242 ALIFSYISER 251 A+IF+Y++ R Sbjct: 244 AMIFAYVTGR 253 >A8SR45.1 A8SR45_9FIRM Putative uncharacterized protein Length = 265 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 109/244 (44%), Positives = 166/244 (68%), Gaps = 1/244 (0%) Query: 6 IIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSVTAG 65 I+Q ++LCK++S+ Q H + N+DL+I++GDFTVIMG SGSGKSTLLY LSG+D T+G Sbjct: 17 ILQARDLCKSFSSEGVQNHVLNNMDLDIYKGDFTVIMGASGSGKSTLLYSLSGMDRPTSG 76 Query: 66 EVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYV-AGTPKREVK 124 +V + + + + EK +A R + G+++Q +LV +L++ ENI +PGY+ T +E + Sbjct: 77 KVIYDGEDITEYNEKRMAELRVYEFGFVFQQIHLVSNLSIRENILVPGYMNKDTSTKETE 136 Query: 125 QRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQGVA 184 R L++ M+I+S RLPA+VSGG N+P ++FADEPTG+LN Sbjct: 137 NRADELIKKMNIESAADRLPAQVSGGEAQRGAIARAVINSPGILFADEPTGALNRRNTQD 196 Query: 185 VLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDREALI 244 VLDLLT++N GQSI+MVTHD++AA RANR+I+I DG++ G L+ + + + RE+ I Sbjct: 197 VLDLLTELNVEGQSILMVTHDVRAAIRANRIIYIEDGRIIGELKLSQYIEEDRKRRESQI 256 Query: 245 FSYI 248 +++ Sbjct: 257 DAWL 260 >A8RLG0.1 A8RLG0_9CLOT Putative uncharacterized protein Length = 262 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 160/248 (64%), Gaps = 1/248 (0%) Query: 3 KTAIIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSV 62 K ++ K++ K + + ++ ++I++ DFT+IMG SG+GKSTLLY+LSG+D V Sbjct: 11 KKTLLAAKDISKEFGKDRGAVPVLDHVSVDIYEDDFTIIMGPSGAGKSTLLYVLSGMDRV 70 Query: 63 TAGEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYVAGTPK-R 121 ++G V + + + RF E ++A R+++ G+++Q ++LV +LTLFEN+ + GY+ K Sbjct: 71 SSGTVVYKGKVISRFKESQMAKIRSREFGFVFQQTHLVSNLTLFENVTVAGYLGKERKPE 130 Query: 122 EVKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQ 181 E +++ +L++ M++ S + R+PAEVSGG N P +IFADEPTG+LN Sbjct: 131 ETRKQAEALLEQMNVGSAKDRMPAEVSGGEAQRAAIARAMINEPGIIFADEPTGALNKRN 190 Query: 182 GVAVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDRE 241 VLDLLT++N GQSI+MVTHD++AA R RL+++ DGK+ L F P+ + RE Sbjct: 191 TGEVLDLLTELNKEGQSILMVTHDLRAAVRGTRLLYLEDGKILDELSMPVFHPEDERTRE 250 Query: 242 ALIFSYIS 249 A I +++ Sbjct: 251 AAINDWLA 258 >C0FD80.1 C0FD80_9CLOT Putative uncharacterized protein Length = 251 Score = 207 bits (526), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 99/248 (39%), Positives = 157/248 (63%), Gaps = 3/248 (1%) Query: 3 KTAIIQTKNLCKTYSTGSEQFHAIRNIDLNIFQGDFTVIMGDSGSGKSTLLYLLSGLDSV 62 + A++ + + K Y E + I + I QGDFT+IMG SG+GKSTLLY LSG+D++ Sbjct: 2 REALLTAEEITKIYPGAQEPV--LNQISVRICQGDFTIIMGPSGAGKSTLLYALSGMDAL 59 Query: 63 TAGEVYFAQQRLDRFTEKELAGFRAQKIGYIYQNSNLVPDLTLFENIALPGYV-AGTPKR 121 ++G+V + +Q L +EK++A RA++ G+++Q +LV +LTLFEN+A+ GY+ G ++ Sbjct: 60 SSGKVLYKEQELGTLSEKKMAALRAKEFGFVFQQPHLVSNLTLFENVAIAGYLEKGKSEK 119 Query: 122 EVKQRVLSLMQAMSIDSQRFRLPAEVSGGXXXXXXXXXXXXNTPEVIFADEPTGSLNYDQ 181 VK+R SL+ M + RLP++ SGG N P ++FADEPTG+LN Sbjct: 120 TVKKRAKSLLAQMHAEKAGDRLPSQASGGEAQRAAIARAMINQPGLLFADEPTGALNRKN 179 Query: 182 GVAVLDLLTDMNTGGQSIVMVTHDIKAACRANRLIFIRDGKVGGMLEFDSFSPDQLQDRE 241 V+DLLT +N GQSI+MVTHD+KAA R R++++ DGK+ + F + ++RE Sbjct: 180 SEEVMDLLTSLNQKGQSILMVTHDVKAAIRGTRILYLEDGKILDEMPLPPFDMNMQKERE 239 Query: 242 ALIFSYIS 249 + ++++ Sbjct: 240 EKVSAWLT 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,392,601,367 Number of extensions: 54863785 Number of successful extensions: 392267 Number of sequences better than 1.0e-05: 65438 Number of HSP's gapped: 333245 Number of HSP's successfully gapped: 68331 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)