BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0010.p (247 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC27.1 B3KC27_9BACI Response regulator receiver 275 2e-72 A3I5H1.1 A3I5H1_9BACI DNA-binding response regulator 266 9e-70 B7APK7.1 B7APK7_9BACE Putative uncharacterized protein 228 4e-58 A3I7E1.1 A3I7E1_9BACI Sensor protein EC=2.7.13.3 228 4e-58 B1HW27.1 B1HW27_LYSSC DNA-binding response regulator 226 1e-57 >B3KC27.1 B3KC27_9BACI Response regulator receiver Length = 235 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 135/216 (62%), Positives = 165/216 (76%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 SRI+ DY+R+QG+ I +N DGL+ V PDFIILD+ LPDA+GIE+CR++R T Sbjct: 17 SRIVNDYLRVQGFSSFITENARDGLQEVRNRQPDFIILDLTLPDADGIEVCRELRTLTSA 76 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGMGNIPGHGDLIS 151 PILILSAR SDTDKVL LGFGADDYMTKPFSLSELVAR+QAHLRRM L+ Sbjct: 77 PILILSARSSDTDKVLALGFGADDYMTKPFSLSELVARVQAHLRRMVDPKLQATTQLLLR 136 Query: 152 LGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDES 211 G L+IDK A K +E+ALSAKEF+LLYFLA + NQVF+K+QLLDQ+WGY+++ +++ Sbjct: 137 FGTLSIDKGARKVMAGQREIALSAKEFDLLYFLASNPNQVFTKTQLLDQVWGYSAYVEDN 196 Query: 212 TITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNLD 247 TITVY+RRLREKLE +YI TVWGVGYKF+ D Sbjct: 197 TITVYVRRLREKLERSGIKSAYITTVWGVGYKFDPD 232 >A3I5H1.1 A3I5H1_9BACI DNA-binding response regulator Length = 235 Score = 266 bits (681), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 125/215 (58%), Positives = 168/215 (78%), Gaps = 1/215 (0%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + I+KDY+ + +D HI G + + ++ PDF+ILD+ LPD +GIE+CR+IR+ + + Sbjct: 16 ANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGIEICRKIREHSNV 75 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRME-GMGNIPGHGDLI 150 ILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARI AHLRR + + + D++ Sbjct: 76 AILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRWLQDHDVQKDVL 135 Query: 151 SLGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDE 210 + + I+K+ Y + + + LSAKEFELL+FLA+++NQVFSKSQLLD +WGY ++GDE Sbjct: 136 HIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFSKSQLLDAVWGYDTYGDE 195 Query: 211 STITVYIRRLREKLEADPSSPSYIKTVWGVGYKFN 245 +TITVYIRR+REK+E +PS P Y++TVWGVGYKF+ Sbjct: 196 NTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFS 230 >B7APK7.1 B7APK7_9BACE Putative uncharacterized protein Length = 238 Score = 228 bits (581), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 105/212 (49%), Positives = 152/212 (71%), Gaps = 1/212 (0%) Query: 36 KDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRIPILI 95 KDY+ L G++V +A +G GL L + + IILD+MLP +G E+CRQ+R++ PI+I Sbjct: 27 KDYLELSGFEVTVAKDGESGLNLALSQNFNMIILDLMLPGVDGFEICRQVREQKNTPIII 86 Query: 96 LSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGM-GNIPGHGDLISLGA 154 +SAR D DK+ GLG GADDYMTKPFS SELVAR++AHL R + + + D+I + Sbjct: 87 VSARKEDIDKIRGLGLGADDYMTKPFSPSELVARVKAHLARYQSLTSGARSNNDIIEIRG 146 Query: 155 LTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDESTIT 214 + IDK A + +NG+E A + KEF+LL FLA++ N V++K +L +IW S GD +T+T Sbjct: 147 IKIDKTARRVFVNGEEKAFTTKEFDLLTFLAQNPNHVYTKDELFKEIWDMESIGDIATVT 206 Query: 215 VYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 V+I+++REK+EAD S+P YI+T+WGVGY+F + Sbjct: 207 VHIKKIREKIEADTSNPQYIETIWGVGYRFKI 238 >A3I7E1.1 A3I7E1_9BACI Sensor protein EC=2.7.13.3 Length = 713 Score = 228 bits (580), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 148/215 (68%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + + +DY+ + + V I NG +GL+ D IILDIMLP NG E+C+QIR I Sbjct: 499 AELQRDYLEINDFMVDIQHNGDEGLKQALHGDYDLIILDIMLPGMNGFEICKQIRAVNNI 558 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGMGNIPGHGDLIS 151 PIL +SA+ D DK+ GLG GADDY+TKPFS SELVAR++AHL R E + + +++S Sbjct: 559 PILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHLSRYERLASNKPTNNMLS 618 Query: 152 LGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDES 211 + +TID A K +NG+E+A + KEF+LL F +H NQV SK QL ++ WGY S D S Sbjct: 619 IHGITIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYERNWGYESAADVS 678 Query: 212 TITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 T+TV+IR+LREK+E DP+ P +++TVWG GY+ N+ Sbjct: 679 TVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 713 >B1HW27.1 B1HW27_LYSSC DNA-binding response regulator Length = 228 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/215 (49%), Positives = 148/215 (68%) Query: 32 SRILKDYIRLQGYDVHIADNGIDGLRLVETLFPDFIILDIMLPDANGIELCRQIRDKTRI 91 + + +DY+ + Y V I +G +GL+ D IILDIMLP NG E+C+QIR I Sbjct: 14 AELQRDYLEINDYVVDIQHHGDEGLKQALHGDYDLIILDIMLPGMNGFEICKQIRAVNNI 73 Query: 92 PILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARIQAHLRRMEGMGNIPGHGDLIS 151 PIL +SA+ D DK+ GLG GADDY+TKPFS SELVAR++AH+ R E + + +++S Sbjct: 74 PILFVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYERLASNQPTNNMMS 133 Query: 152 LGALTIDKKAYKTTLNGQELALSAKEFELLYFLAEHKNQVFSKSQLLDQIWGYTSHGDES 211 + LTID A K +NG+E+A + KEF+LL F +H NQV SK QL ++ WGY S D S Sbjct: 134 IHGLTIDTSARKVFVNGEEVAFTTKEFDLLVFFVKHPNQVLSKEQLYERNWGYESAADVS 193 Query: 212 TITVYIRRLREKLEADPSSPSYIKTVWGVGYKFNL 246 T+TV+IR+LREK+E DP+ P +++TVWG GY+ N+ Sbjct: 194 TVTVHIRKLREKIERDPAQPKFLETVWGAGYRLNV 228 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.139 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,387,643,829 Number of extensions: 54269232 Number of successful extensions: 214451 Number of sequences better than 1.0e-05: 23154 Number of HSP's gapped: 196514 Number of HSP's successfully gapped: 23215 Length of query: 247 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 115 Effective length of database: 1,817,122,223 Effective search space: 208969055645 Effective search space used: 208969055645 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)