BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0009.p (435 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8MJ38.1 A8MJ38_ALKOO Amino acid permease-associated region 439 e-121 B1L0K0.1 B1L0K0_CLOBM Amino acid permease family protein 360 2e-97 A6M0K8.1 A6M0K8_CLOB8 Amino acid permease-associated region 357 1e-96 A7FTQ1.1 A7FTQ1_CLOB1 Amino acid permease family protein 334 8e-90 A5I1K8.1 A5I1K8_CLOBH Amino acid permease family protein 334 8e-90 >A8MJ38.1 A8MJ38_ALKOO Amino acid permease-associated region Length = 450 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 230/433 (53%), Positives = 306/433 (70%), Gaps = 1/433 (0%) Query: 3 TTNSLKKSVTFFEALAIVVGMIIGSGIFLKPGIVLNNAGTPWVSILAWGIGGIITXXXXX 62 + +LKK++TF +A++IVVG+IIGSGIFLK G+V NAG+P++ ILAW +GGIIT Sbjct: 18 SQQNLKKAITFPQAISIVVGVIIGSGIFLKTGVVFQNAGSPYMGILAWFVGGIITLTSAL 77 Query: 63 XXXXXXXXXPKSXXXXXXXXXXXXXVFGYLLGWVQAVISYPASVAALAIAFATYSGYFLP 122 P++ + +LLGWVQ++I+YPASVAALAIAF+T++ +F+P Sbjct: 78 TIAEISSAIPQTGGIYTYLKVLYGDTWAFLLGWVQSIIAYPASVAALAIAFSTFATFFIP 137 Query: 123 LNGWQQKLLAVSILAFILIMNVIATKFGGIIQTVATVGKLIPVAGIVGVGLFSNLAPGFG 182 L QQKLLA+ IL F+ IMN+IATKFGG+IQ ++T+GKLIP+ I+ GL A F Sbjct: 138 LTEVQQKLLAIFILLFVAIMNMIATKFGGMIQLISTIGKLIPLIVIIVFGLIKGTANDFS 197 Query: 183 GM-ETSXXXXXXXXXXXXTLWAYDGWISVTNMAGEIKDPAKTLPKVISIGVIFVIAVYVL 241 + T+ TLWAYDGW VT +AGE+K+P+K LPK I +GV VI VYV+ Sbjct: 198 FISNTTAPSLGFGAALLGTLWAYDGWAGVTTIAGELKNPSKELPKAIILGVSSVIGVYVI 257 Query: 242 FNVAVFKALPYDQIISSPTPGADAAEALFGSGGGAFITAGIIVSVLGALNGYLMTAARVP 301 FN+A+ K +P ++II+S P +DAA LFG G FIT G++VSV GALNGY++T ARVP Sbjct: 258 FNLALLKIMPMNEIINSAKPASDAATILFGQSGAVFITTGVLVSVFGALNGYILTGARVP 317 Query: 302 QAMGENNQIPFSRVLRSIHPKFQTPANALIFQSVLAVIYIFSGTFNTLTDLLVFVLWIFF 361 AMG Q+PFS L+ IHP+ TPAN+L+ S+LA++YI SG+FNTLTDL VF+LWIFF Sbjct: 318 LAMGAKGQLPFSNFLKQIHPRLNTPANSLMAISILAILYILSGSFNTLTDLTVFILWIFF 377 Query: 362 TMGVFGVFILRKRMPLEKGRYRVPLYPVTPIIGVAGGIYILASTIISDPLRSLVGIGITL 421 M V G+FILR+R + + YRVPLYP+ P+IG+ GG YIL ST+IS P+ SL+GIGI L Sbjct: 378 VMTVAGIFILRRRRDIRRPAYRVPLYPIVPLIGILGGSYILYSTLISSPINSLIGIGIAL 437 Query: 422 AGLPVYYVLSRQK 434 GLP Y+ L R++ Sbjct: 438 LGLPFYFYLRRKR 450 >B1L0K0.1 B1L0K0_CLOBM Amino acid permease family protein Length = 439 Score = 360 bits (923), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 191/432 (44%), Positives = 274/432 (63%), Gaps = 1/432 (0%) Query: 5 NSLKKSVTFFEALAIVVGMIIGSGIFLKPGIVLNNAGTPWVSILAWGIGGIITXXXXXXX 64 L+K++ F+A+AIV+GM+IGSGIF KP IV NAG+P + I+AW +GGIIT Sbjct: 7 EKLQKNLGLFDAIAIVIGMVIGSGIFFKPAIVFKNAGSPILGIVAWLVGGIITIASGLTV 66 Query: 65 XXXXXXXPKSXXXXXXXXXXXXXVFGYLLGWVQAVISYPASVAALAIAFATYSGYFLPLN 124 PK+ +LLGWVQ+++ P S AALAI +T + F+PL Sbjct: 67 AEIAATIPKTGGIFVYIKELYGERLAFLLGWVQSIVYVPGSAAALAIILSTQATSFIPLT 126 Query: 125 GWQQKLLAVSILAFILIMNVIATKFGGIIQTVATVGKLIPVAGIVGVGLFSNLAPG-FGG 183 +QK+LA++ + FI+++N+I+TKF +Q + TVGKLIP+ I+ +G A G Sbjct: 127 TTEQKILAMTFIVFIMVLNIISTKFVSKMQGIITVGKLIPIIAIIALGFIKGTAKGDILN 186 Query: 184 METSXXXXXXXXXXXXTLWAYDGWISVTNMAGEIKDPAKTLPKVISIGVIFVIAVYVLFN 243 + +S TLWAYDGWISV NMAGE+K+P K LP+ I IG+ I VYVL N Sbjct: 187 VSSSSTVSGFGAALLGTLWAYDGWISVGNMAGELKNPKKDLPRSIIIGLGTTIVVYVLIN 246 Query: 244 VAVFKALPYDQIISSPTPGADAAEALFGSGGGAFITAGIIVSVLGALNGYLMTAARVPQA 303 +A+ +P + I S P +DAA L G+ G I+AGI++++ GALNGYLMT R+P A Sbjct: 247 LALINIMPINSITLSEKPVSDAAVMLLGNTGAKIISAGILIAIFGALNGYLMTGVRIPLA 306 Query: 304 MGENNQIPFSRVLRSIHPKFQTPANALIFQSVLAVIYIFSGTFNTLTDLLVFVLWIFFTM 363 M ++ IPFS ++ + TP N IF+++LA +Y+ +G+FN LTDL++FVLW+FF M Sbjct: 307 MSQDRIIPFSNFFSKVNGRSGTPVNVFIFEAILACLYVLTGSFNILTDLVMFVLWLFFIM 366 Query: 364 GVFGVFILRKRMPLEKGRYRVPLYPVTPIIGVAGGIYILASTIISDPLRSLVGIGITLAG 423 V G+FILR + Y+VPLYP+ P++G+ G +YI+ ST+I++ +L GIGITL G Sbjct: 367 TVAGIFILRTKFKYLDRPYKVPLYPIVPLVGIIGSMYIIISTLITNTFYALCGIGITLLG 426 Query: 424 LPVYYVLSRQKR 435 LPVY + +Q + Sbjct: 427 LPVYSYIKKQNK 438 >A6M0K8.1 A6M0K8_CLOB8 Amino acid permease-associated region Length = 451 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 197/434 (45%), Positives = 271/434 (62%), Gaps = 5/434 (1%) Query: 7 LKKSVTFFEALAIVVGMIIGSGIFLKPGIVLNNAGTPWVSILAWGIGGIITXXXXXXXXX 66 LKK + EA+ IV+G++IGSGIF K V NAGTP + I+AW IGG IT Sbjct: 17 LKKEIGLIEAITIVIGVVIGSGIFFKASSVFKNAGTPTLGIMAWLIGGCITIASALTVAE 76 Query: 67 XXXXXPKSXXXXXXXXXXXXXVFGYLLGWVQAVISYPASVAALAIAFATYSGYFLP-LNG 125 PK+ + +L GW+Q +I P AAL+I F T + YF+P L Sbjct: 77 IAVAIPKTGGVFVYIKELYSEKWAFLFGWMQTLIYVPGVAAALSIVFVTQATYFIPDLTP 136 Query: 126 WQQKLLAVSILAFILIMNVIATKFGGIIQTVATVGKLIPVAGIVGVGLFSNLAPGFGGM- 184 QK+ A+ IL F++ +NV++++ GG +Q ++T+GKL+P+ IV GL + A F Sbjct: 137 MMQKIFAICILFFVMALNVLSSRLGGKVQVISTIGKLVPIIFIVIFGLINGTAHDFSTTV 196 Query: 185 --ETSXXXXXXXXXXXXTLWAYDGWISVTNMAGEIKDPAKTLPKVISIGVIFVIAVYVLF 242 + TLWAYDGWISV NMAGE+K+P K LPK I +G+I +I VY+L Sbjct: 197 FASNTSGAAGFGAAILGTLWAYDGWISVGNMAGELKNPEKDLPKSIIMGLIAIIIVYILI 256 Query: 243 NVAVFKALPYDQIISSPTPGADAAEALFGSGGGAFITAGIIVSVLGALNGYLMTAARVPQ 302 NVA+ +P + +I S P +DAA LFG+ G A I GI++S+ GALNGYLMT R+P Sbjct: 257 NVAIINIMPVNDVILSSKPASDAAVILFGNMGAALIAVGIMISIFGALNGYLMTGVRIPF 316 Query: 303 AMGENNQIPFSRVLRSIHPKFQTPANALIFQSVLAVIYIFSGTFNTLTDLLVFVLWIFFT 362 AM ++N PF + I+ KF+TP N F+ +LA +Y+ SG+F+ LT+L VFV+WIFF Sbjct: 317 AMAQDNLFPFPKFFGKINEKFETPINTFAFEVLLASLYVLSGSFDKLTNLAVFVMWIFFV 376 Query: 363 MGVFGVFILRKRMPLEKGRYRVPLYPVTPIIGVAGGIYILASTIISDPLRSLVGIGITLA 422 M V G+FILR++ K Y+VPLYP+ P+IG+ GG+YIL ST I+D L ++ GIGITL Sbjct: 377 MCVCGIFILRRKHKELKTSYKVPLYPIVPLIGIVGGLYILISTFITDSLSAIYGIGITLI 436 Query: 423 GLPVY-YVLSRQKR 435 GLPVY Y+ + KR Sbjct: 437 GLPVYFYIRKKYKR 450 >A7FTQ1.1 A7FTQ1_CLOB1 Amino acid permease family protein Length = 439 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 195/432 (45%), Positives = 274/432 (63%), Gaps = 1/432 (0%) Query: 5 NSLKKSVTFFEALAIVVGMIIGSGIFLKPGIVLNNAGTPWVSILAWGIGGIITXXXXXXX 64 +L+K++ F+A+AIV+GM+IGSGIF KP IV NAG+P + ILAW +GG+IT Sbjct: 7 ENLQKNLGLFDAIAIVIGMVIGSGIFFKPAIVFKNAGSPMLGILAWLVGGLITIASGLTI 66 Query: 65 XXXXXXXPKSXXXXXXXXXXXXXVFGYLLGWVQAVISYPASVAALAIAFATYSGYFLPLN 124 PK+ F +L+GWVQ+++ P S AAL+I + F+PL Sbjct: 67 AEIAAAIPKTGGIFVYIKELYGEKFAFLIGWVQSIVYIPGSAAALSIILSIQITSFIPLT 126 Query: 125 GWQQKLLAVSILAFILIMNVIATKFGGIIQTVATVGKLIPVAGIVGVGLFSNLAPG-FGG 183 +QK+LA+ + FI+I+N+I+TK +Q + ++ KLIP+ I+ +G A G Sbjct: 127 AIEQKVLAIVFIIFIMILNIISTKLVSKMQGIISIAKLIPIIAIIALGFIKGTAKGDILN 186 Query: 184 METSXXXXXXXXXXXXTLWAYDGWISVTNMAGEIKDPAKTLPKVISIGVIFVIAVYVLFN 243 + +S TLWAYDGWISV NMAGE+K+P K LP+ I IG+ I VYVL N Sbjct: 187 ISSSSTVSGFGAALLGTLWAYDGWISVGNMAGELKNPKKDLPRSIIIGLGTTIVVYVLIN 246 Query: 244 VAVFKALPYDQIISSPTPGADAAEALFGSGGGAFITAGIIVSVLGALNGYLMTAARVPQA 303 +A+ +P II+S P +DAA L GS G I+AGI++S+ GALNGYLMT R+P A Sbjct: 247 LALINIMPMSAIITSEKPASDAAVVLLGSTGAKIISAGILISIFGALNGYLMTGVRIPLA 306 Query: 304 MGENNQIPFSRVLRSIHPKFQTPANALIFQSVLAVIYIFSGTFNTLTDLLVFVLWIFFTM 363 M ++ IPFS+ +H K TP NA IF++VLA +Y+ SG+FN LTDL++FVLW+FFTM Sbjct: 307 MSQDRSIPFSKYFSKVHEKSGTPVNAFIFETVLACLYVLSGSFNVLTDLVMFVLWLFFTM 366 Query: 364 GVFGVFILRKRMPLEKGRYRVPLYPVTPIIGVAGGIYILASTIISDPLRSLVGIGITLAG 423 V G+F+LR + Y+VPLYP+ P+IG+ G YI+ ST+I++ +L GIGITL G Sbjct: 367 AVAGIFVLRTKFKHLDRPYKVPLYPLVPLIGIIGSSYIIISTLITNTFYALCGIGITLLG 426 Query: 424 LPVYYVLSRQKR 435 LPVY + +Q + Sbjct: 427 LPVYSYIKKQNK 438 >A5I1K8.1 A5I1K8_CLOBH Amino acid permease family protein Length = 439 Score = 334 bits (857), Expect = 8e-90, Method: Compositional matrix adjust. Identities = 195/432 (45%), Positives = 274/432 (63%), Gaps = 1/432 (0%) Query: 5 NSLKKSVTFFEALAIVVGMIIGSGIFLKPGIVLNNAGTPWVSILAWGIGGIITXXXXXXX 64 +L+K++ F+A+AIV+GM+IGSGIF KP IV NAG+P + ILAW +GG+IT Sbjct: 7 ENLQKNLGLFDAIAIVIGMVIGSGIFFKPAIVFKNAGSPMLGILAWLVGGLITIASGLTI 66 Query: 65 XXXXXXXPKSXXXXXXXXXXXXXVFGYLLGWVQAVISYPASVAALAIAFATYSGYFLPLN 124 PK+ F +L+GWVQ+++ P S AAL+I + F+PL Sbjct: 67 AEIAAAIPKTGGIFVYIKELYGEKFAFLIGWVQSIVYIPGSAAALSIILSIQITSFIPLT 126 Query: 125 GWQQKLLAVSILAFILIMNVIATKFGGIIQTVATVGKLIPVAGIVGVGLFSNLAPG-FGG 183 +QK+LA+ + FI+I+N+I+TK +Q + ++ KLIP+ I+ +G A G Sbjct: 127 AIEQKVLAIVFIIFIMILNIISTKLVSKMQGIISIAKLIPIIAIIALGFIKGTAKGDILN 186 Query: 184 METSXXXXXXXXXXXXTLWAYDGWISVTNMAGEIKDPAKTLPKVISIGVIFVIAVYVLFN 243 + +S TLWAYDGWISV NMAGE+K+P K LP+ I IG+ I VYVL N Sbjct: 187 ISSSSTVSGFGAALLGTLWAYDGWISVGNMAGELKNPKKDLPRSIIIGLGTTIVVYVLIN 246 Query: 244 VAVFKALPYDQIISSPTPGADAAEALFGSGGGAFITAGIIVSVLGALNGYLMTAARVPQA 303 +A+ +P II+S P +DAA L GS G I+AGI++S+ GALNGYLMT R+P A Sbjct: 247 LALINIMPMSAIITSEKPASDAAVVLLGSTGAKIISAGILISIFGALNGYLMTGVRIPLA 306 Query: 304 MGENNQIPFSRVLRSIHPKFQTPANALIFQSVLAVIYIFSGTFNTLTDLLVFVLWIFFTM 363 M ++ IPFS+ +H K TP NA IF++VLA +Y+ SG+FN LTDL++FVLW+FFTM Sbjct: 307 MSQDRSIPFSKYFSKVHEKSGTPVNAFIFETVLACLYVLSGSFNVLTDLVMFVLWLFFTM 366 Query: 364 GVFGVFILRKRMPLEKGRYRVPLYPVTPIIGVAGGIYILASTIISDPLRSLVGIGITLAG 423 V G+F+LR + Y+VPLYP+ P+IG+ G YI+ ST+I++ +L GIGITL G Sbjct: 367 AVAGIFVLRTKFKHLDRPYKVPLYPLVPLIGIIGSSYIIISTLITNTFYALCGIGITLLG 426 Query: 424 LPVYYVLSRQKR 435 LPVY + +Q + Sbjct: 427 LPVYSYIKKQNK 438 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.143 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,368,625,614 Number of extensions: 95090164 Number of successful extensions: 401388 Number of sequences better than 1.0e-05: 6034 Number of HSP's gapped: 394731 Number of HSP's successfully gapped: 6068 Length of query: 435 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 296 Effective length of database: 1,751,175,118 Effective search space: 518347834928 Effective search space used: 518347834928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 133 (55.8 bits)