BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0004.p (250 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9U4.1 C0Z9U4_BREBN Transcriptional regulator 270 7e-71 B1D5Y8.1 B1D5Y8_9BACL Transcriptional regulator, LysR family 268 4e-70 C4L1I2.1 C4L1I2_EXISA Transcriptional regulator, LysR family 201 4e-50 B1YFC3.1 B1YFC3_EXIS2 Transcriptional regulator, LysR family 197 8e-49 A6EFY7.1 A6EFY7_9SPHI Putative uncharacterized protein 144 5e-33 >C0Z9U4.1 C0Z9U4_BREBN Transcriptional regulator Length = 290 Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 129/233 (55%), Positives = 162/233 (69%) Query: 1 VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60 +VDFEWYRSF +IYKH+SVSEAA+ R+MTQPAMSQHLASLEAEVGE LF R RK+IPTE Sbjct: 1 MVDFEWYRSFISIYKHSSVSEAARTRMMTQPAMSQHLASLEAEVGEPLFTRAPRKMIPTE 60 Query: 61 RGKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIGTPHEFYTEKVLPQLHKCKISVIS 120 RGK LY+Q+ PLIE+LEETT K+ + L I+IG+ HEF+ EK+ P + ++ VI+ Sbjct: 61 RGKALYTQVVPLIEALEETTQTLKTNAATALPVIRIGSAHEFFREKLAPHIGSFQMRVIA 120 Query: 121 NFGTXXXXXXXXXXXXXXXIITSKRYQTPGVEYLKFMDEEFVIVAPGHCEIPHTDNLELK 180 G I+ S++ PGVEY+ +M EEF +VAP P D+ + Sbjct: 121 YLGVASKILEFLLEEKVDLIVMSQKLSAPGVEYIPYMQEEFALVAPPDFGEPTFDDKDSF 180 Query: 181 ERWLSSQNWISYGLDLPIIRRIWREHFKKRPQIRPIHIIPNLHMILKAIGNGV 233 E WL SQ WISY LDLPIIRR WREHF+KRPQ P H++P+LH +LKAI +G Sbjct: 181 EAWLCSQPWISYDLDLPIIRRFWREHFQKRPQTHPTHVVPDLHGVLKAIEHGA 233 >B1D5Y8.1 B1D5Y8_9BACL Transcriptional regulator, LysR family Length = 286 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 129/232 (55%), Positives = 162/232 (69%) Query: 1 VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60 +VDFEWYRSF IYKH+SVSEAAK R+MTQPAMSQHLA+LEAEVGEALF R SR++ TE Sbjct: 1 MVDFEWYRSFIAIYKHHSVSEAAKTRMMTQPAMSQHLAALEAEVGEALFTRVSRRLAVTE 60 Query: 61 RGKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIGTPHEFYTEKVLPQLHKCKISVIS 120 RGK+LYS++APL+ESLEETT KS SLP +IG E++ E LP++ + +S Sbjct: 61 RGKELYSRVAPLVESLEETTAGLKSTSLPNNKVFRIGLSLEYFQELFLPKVTNSGMCSVS 120 Query: 121 NFGTXXXXXXXXXXXXXXXIITSKRYQTPGVEYLKFMDEEFVIVAPGHCEIPHTDNLELK 180 FGT IIT K++ PG+EY M+E F I+ P EIP + + Sbjct: 121 YFGTADQLLELLKEDQVELIITPKKFIVPGIEYELLMEETFTIITPASLEIPDLRHPKEI 180 Query: 181 ERWLSSQNWISYGLDLPIIRRIWREHFKKRPQIRPIHIIPNLHMILKAIGNG 232 E WLS Q WISYGL+LPIIRR+WREHFK+RP I+P H+IPNLH +++A+ G Sbjct: 181 EEWLSEQRWISYGLELPIIRRLWREHFKRRPLIKPKHVIPNLHAVIRAVEMG 232 >C4L1I2.1 C4L1I2_EXISA Transcriptional regulator, LysR family Length = 287 Score = 201 bits (512), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 104/231 (45%), Positives = 147/231 (63%), Gaps = 7/231 (3%) Query: 1 VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60 ++DFEWYRSF +Y+ SVS AA+ R +TQPA+SQH+A+LEAE+ +LF R R++IPT+ Sbjct: 1 MIDFEWYRSFIHVYQQRSVSAAARVRFLTQPAVSQHIAALEAELETSLFTRAPRQMIPTD 60 Query: 61 RGKQLYSQLAPLIESLEETTMNFK--SASLPTLSSIKIGTPHEFYTEKVLPQLHKCKISV 118 GK+LY+Q+ LI+ LEE ++ K S P +K G P EF T +++P L Sbjct: 61 AGKELYTQVVGLIDRLEELSLEMKYVSGEQPR-PVLKFGGPTEFVTHEIIPALPLDAAQY 119 Query: 119 ISNFGTXXXXXXXXXXXXXXXIITSKRYQTPGVEYLKFMDEEFVIVAPGHCEIPHTDNLE 178 I++FG +I +KR + PG++Y+ DE F++VAP E+P TD E Sbjct: 120 IADFGMTADLIKRLADGELDFVIATKRMEEPGIQYVPIADESFLLVAPNDWEVP-TD--E 176 Query: 179 LKERWLSSQNWISYGLDLPIIRRIWREHFKKRPQIRPIHIIPNLHMILKAI 229 LK+ W+ Q WISYGL+LPIIRR ++ F +RP IRP I+PN+ IL AI Sbjct: 177 LKD-WMDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMILPNVDAILAAI 226 >B1YFC3.1 B1YFC3_EXIS2 Transcriptional regulator, LysR family Length = 287 Score = 197 bits (501), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 144/232 (62%), Gaps = 5/232 (2%) Query: 1 VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60 ++DFEWYRSF +Y+ SVS AA+ R +TQPA+SQH+A+LEAE+ +LFIR R+++PT+ Sbjct: 1 MIDFEWYRSFIHVYQQRSVSAAARIRFLTQPAVSQHIAALEAELQSSLFIRAPRQMVPTD 60 Query: 61 RGKQLYSQLAPLIESLEETTMNFKSASLPTLSS-IKIGTPHEFYTEKVLPQLHKCKISVI 119 GK+LY+Q+ LI+ LEE ++ K + + +K G P EF T +V+P L I Sbjct: 61 AGKELYTQVVGLIDRLEELSLEMKYVAGEQVRPLLKFGGPTEFITHEVIPVLPLDLAQYI 120 Query: 120 SNFGTXXXXXXXXXXXXXXXIITSKRYQTPGVEYLKFMDEEFVIVAPGHCEIPHTDNLEL 179 +FG +I++KR + PG++Y+ DE F +VAP E P D Sbjct: 121 GDFGLTDQLLKRLAIGELDFVISTKRIEEPGIQYVPIADETFFLVAPYAWEQPDDD---- 176 Query: 180 KERWLSSQNWISYGLDLPIIRRIWREHFKKRPQIRPIHIIPNLHMILKAIGN 231 + W+ Q WISYGL+LPIIRR ++ F +RP IRP ++PN+ ILKA+ + Sbjct: 177 LKGWMDRQPWISYGLELPIIRRYYQTQFGERPDIRPEMVLPNVDAILKAVAS 228 >A6EFY7.1 A6EFY7_9SPHI Putative uncharacterized protein Length = 298 Score = 144 bits (364), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 132/244 (54%), Gaps = 14/244 (5%) Query: 1 VVDFEWYRSFCTIYKHNSVSEAAKARIMTQPAMSQHLASLEAEVGEALFIRTSRKIIPTE 60 +++ EW+R+F +IY+ +++ AA+A ++QP +S HL+SLEA VG LF RTSRK++ TE Sbjct: 1 MINLEWFRTFKSIYETGTLTGAAEALYISQPGVSLHLSSLEAYVGYKLFDRTSRKMVATE 60 Query: 61 RGKQLYSQLAPLIESLEETTMNFKSASLPTLSSIKIGTPHE---FYTEKVLPQLHKCKIS 117 RGK LY+ + + LE +F ++ +I IG E F E LPQL + Sbjct: 61 RGKVLYNYIQEAVAKLETAEHHFHKSTEKDTPTISIGMCFETFQFTLESYLPQL---PFN 117 Query: 118 VISNFGTXXXXXXXXXXXXXXXIITSKRYQTPGVEYLKFMDEEFVIVAPGHCEIPHTDNL 177 +I FG IIT ++ ++PG+ Y F E V+VA ++ + + Sbjct: 118 IIIKFGEYPEMLNDLDNGILDLIITPQKGESPGISYKPFSKERIVLVAGSETDLAGLEGI 177 Query: 178 ELK------ERWLSSQNWISYGLDLPIIRRIWREHFKKRPQIRPIHIIPNLHMILKAIG- 230 + K ++WL +Q W D+ ++R W +F KRP +P +I+PNL I++ I Sbjct: 178 DTKKQLQEFQQWLKAQTWYGTTADMEHMQRFWHTNFNKRPDFKPNYIVPNLSSIIRCISG 237 Query: 231 -NGV 233 NG+ Sbjct: 238 KNGL 241 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,367,961,240 Number of extensions: 50194885 Number of successful extensions: 128867 Number of sequences better than 1.0e-05: 635 Number of HSP's gapped: 129508 Number of HSP's successfully gapped: 635 Length of query: 250 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 118 Effective length of database: 1,817,122,223 Effective search space: 214420422314 Effective search space used: 214420422314 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)