BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0273.0003.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z9U2.1 C0Z9U2_BREBN Putative peptidase C56 family protein 362 1e-98 B1DBP0.1 B1DBP0_9BACL ThiJ/PfpI domain protein 271 3e-71 C1PVX2.1 C1PVX2_ALIAC Putative intracellular protease/amidase 266 8e-70 B7DQG4.1 B7DQG4_9BACL ThiJ/PfpI domain protein 266 8e-70 B1YFC6.1 B1YFC6_EXIS2 ThiJ/PfpI domain protein 258 2e-67 >C0Z9U2.1 C0Z9U2_BREBN Putative peptidase C56 family protein Length = 220 Score = 362 bits (929), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 171/219 (78%), Positives = 198/219 (90%) Query: 1 MAKKVLIVVTNHTEIHEGRPTGIWLSEFAEAYMGFISQGYEVLVASPLGGQAPVDPGSVD 60 MAK++L+VVTNHT++ EG+ TGIWLSEFAEAY+ F ++G+EV VASPLGG P+DPGSVD Sbjct: 1 MAKQILMVVTNHTDMQEGKKTGIWLSEFAEAYLAFENKGFEVTVASPLGGVGPIDPGSVD 60 Query: 61 DHTAQEILDTQKYLENTIKLDEVSAENFDAIFLPGGHGTMYDLPDNQALQKLLRDFYEAD 120 D T QEILD K+LENT KLD+V+A+ F+AIFLPGGHGTM+DLPDNQ LQ+LLRDFYEA Sbjct: 61 DQTPQEILDAAKHLENTNKLDDVTADGFEAIFLPGGHGTMFDLPDNQKLQQLLRDFYEAG 120 Query: 121 KIVAAVCHGPAGLVGATLSSGQPLVAGKRVNAFTDREEADTTLDKHLPFLLESKLRDLGA 180 KIVAAVCHGPAGLVGATLS+GQPLVAGKRVNAFTDREE T L +LPFLLESK+RDL A Sbjct: 121 KIVAAVCHGPAGLVGATLSNGQPLVAGKRVNAFTDREEVATGLGSYLPFLLESKIRDLCA 180 Query: 181 IYVAAPNWTSHVEVDGNLITGQNPQSTVAVTEAVIAKLG 219 I+VAAPNW++HVEVDGNLITGQNPQST+AVTEAVI++LG Sbjct: 181 IFVAAPNWSTHVEVDGNLITGQNPQSTLAVTEAVISRLG 219 >B1DBP0.1 B1DBP0_9BACL ThiJ/PfpI domain protein Length = 220 Score = 271 bits (694), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 132/219 (60%), Positives = 170/219 (77%), Gaps = 2/219 (0%) Query: 1 MAKKVLIVVTNHTEIHEGRPTGIWLSEFAEAYMGFISQGYEVLVASPLGGQAPVDPGSVD 60 M K+VL+VVT ++ + TG+WLSEF EAY+ F +GYE+ +ASPLGGQAP+D S++ Sbjct: 1 MTKRVLMVVTTADKLSDTERTGLWLSEFGEAYVAFSGEGYEITIASPLGGQAPLDHRSLE 60 Query: 61 DHTAQEILDTQKYLENTIKLDEVS-AENFDAIFLPGGHGTMYDLPDNQALQKLLRDFYEA 119 +QE+ DT +L +TIKL V+ +++DAIFLPGGHGTM+D+P N+ LQ ++R YEA Sbjct: 61 G-ISQELRDTASFLTDTIKLSLVNDIDSYDAIFLPGGHGTMFDMPGNELLQSIIRTLYEA 119 Query: 120 DKIVAAVCHGPAGLVGATLSSGQPLVAGKRVNAFTDREEADTTLDKHLPFLLESKLRDLG 179 K+VAAVCHGPA LVG LS GQ LVAGK V AFTD EE +TTLD+++PFLLESKLR+LG Sbjct: 120 GKVVAAVCHGPAALVGVQLSDGQLLVAGKTVAAFTDEEERETTLDQYMPFLLESKLRELG 179 Query: 180 AIYVAAPNWTSHVEVDGNLITGQNPQSTVAVTEAVIAKL 218 A V +PNWT +V+VDGNLITGQNPQST + + VIA+L Sbjct: 180 ANVVLSPNWTDNVQVDGNLITGQNPQSTESAAKEVIAQL 218 >C1PVX2.1 C1PVX2_ALIAC Putative intracellular protease/amidase Length = 223 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 129/218 (59%), Positives = 160/218 (73%) Query: 1 MAKKVLIVVTNHTEIHEGRPTGIWLSEFAEAYMGFISQGYEVLVASPLGGQAPVDPGSVD 60 MAKKVL+VVT+ ++ +G PTG+WLSEFAE Y F GYEV VASP GGQAP+D SV Sbjct: 2 MAKKVLMVVTSADKMTDGHPTGLWLSEFAEPYTEFKQAGYEVTVASPRGGQAPIDERSVQ 61 Query: 61 DHTAQEILDTQKYLENTIKLDEVSAENFDAIFLPGGHGTMYDLPDNQALQKLLRDFYEAD 120 + + + + L+ TI L +VSA ++DAIFLPGGHGTM+D PD+ LQ L+R F E+ Sbjct: 62 NGELNQWPEAVEILKQTIPLSQVSASDYDAIFLPGGHGTMFDFPDSAELQALIRTFAESG 121 Query: 121 KIVAAVCHGPAGLVGATLSSGQPLVAGKRVNAFTDREEADTTLDKHLPFLLESKLRDLGA 180 K+VAAVCHGPAGLV LS+G PLV GKRV AFTD EE LD +PF+LE++LR+LGA Sbjct: 122 KVVAAVCHGPAGLVNVRLSNGDPLVKGKRVTAFTDEEERAVKLDDKVPFMLETRLRELGA 181 Query: 181 IYVAAPNWTSHVEVDGNLITGQNPQSTVAVTEAVIAKL 218 +VA P W+ HVE DGNLITGQNPQS ++ +AVI L Sbjct: 182 QFVAQPMWSDHVERDGNLITGQNPQSGISAAKAVIQAL 219 >B7DQG4.1 B7DQG4_9BACL ThiJ/PfpI domain protein Length = 223 Score = 266 bits (681), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 129/218 (59%), Positives = 160/218 (73%) Query: 1 MAKKVLIVVTNHTEIHEGRPTGIWLSEFAEAYMGFISQGYEVLVASPLGGQAPVDPGSVD 60 MAKKVL+VVT+ ++ +G PTG+WLSEFAE Y F GYEV VASP GGQAP+D SV Sbjct: 2 MAKKVLMVVTSADKMTDGHPTGLWLSEFAEPYTEFKQAGYEVTVASPRGGQAPIDERSVQ 61 Query: 61 DHTAQEILDTQKYLENTIKLDEVSAENFDAIFLPGGHGTMYDLPDNQALQKLLRDFYEAD 120 + + + + L+ TI L +VSA ++DAIFLPGGHGTM+D PD+ LQ L+R F E+ Sbjct: 62 NGELNQWPEAVEILKQTIPLSQVSASDYDAIFLPGGHGTMFDFPDSAELQALIRTFAESG 121 Query: 121 KIVAAVCHGPAGLVGATLSSGQPLVAGKRVNAFTDREEADTTLDKHLPFLLESKLRDLGA 180 K+VAAVCHGPAGLV LS+G PLV GKRV AFTD EE LD +PF+LE++LR+LGA Sbjct: 122 KVVAAVCHGPAGLVNVRLSNGDPLVKGKRVTAFTDEEERAVKLDDKVPFMLETRLRELGA 181 Query: 181 IYVAAPNWTSHVEVDGNLITGQNPQSTVAVTEAVIAKL 218 +VA P W+ HVE DGNLITGQNPQS ++ +AVI L Sbjct: 182 QFVAQPMWSDHVERDGNLITGQNPQSGISAAKAVIQAL 219 >B1YFC6.1 B1YFC6_EXIS2 ThiJ/PfpI domain protein Length = 220 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 128/219 (58%), Positives = 159/219 (72%), Gaps = 1/219 (0%) Query: 1 MAKKVLIVVTNHTEIHEGRPTGIWLSEFAEAYMGFISQGYEVLVASPLGGQAPVDPGSVD 60 M+K VL+VVTN +E+ EG TGIWLSEF EAY+ F +GY + VASP GG +P+D S++ Sbjct: 1 MSKHVLMVVTNASEMKEGHATGIWLSEFGEAYVAFQKEGYTITVASPNGGLSPIDARSLE 60 Query: 61 DHTAQEILDTQKYLENTIKLDEVS-AENFDAIFLPGGHGTMYDLPDNQALQKLLRDFYEA 119 D +I T LENT+ L+ +S FDAIF+PGGHGTM+DLP + AL LR +EA Sbjct: 61 DEVPADIQATAPLLENTLDLESISDFSAFDAIFMPGGHGTMFDLPHSDALNHALRTLFEA 120 Query: 120 DKIVAAVCHGPAGLVGATLSSGQPLVAGKRVNAFTDREEADTTLDKHLPFLLESKLRDLG 179 K VAAVCHGPAGLV ATL+ G PLVAGK + FTD EE T LD ++PFLLE++LR+LG Sbjct: 121 GKTVAAVCHGPAGLVSATLTDGTPLVAGKTIATFTDEEERATGLDIYMPFLLETRLRELG 180 Query: 180 AIYVAAPNWTSHVEVDGNLITGQNPQSTVAVTEAVIAKL 218 A + A N+T + +VDGNL+TGQNPQSTVAV AVI L Sbjct: 181 ANIIVADNFTENFQVDGNLVTGQNPQSTVAVANAVIKTL 219 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,368,512,433 Number of extensions: 58501878 Number of successful extensions: 151566 Number of sequences better than 1.0e-05: 1127 Number of HSP's gapped: 150977 Number of HSP's successfully gapped: 1127 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)