BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0007.p (535 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K645.1 B3K645_9BACI Response regulator receiver 687 0.0 B1D4P3.1 B1D4P3_9BACL Two component transcriptional regulator, A... 175 1e-41 A4XMG0.1 A4XMG0_CALS8 Two component transcriptional regulator, A... 172 9e-41 B3KJG1.1 B3KJG1_9BACI Response regulator receiver 171 2e-40 B0P6G3.1 B0P6G3_9FIRM Putative uncharacterized protein 167 3e-39 >B3K645.1 B3K645_9BACI Response regulator receiver Length = 535 Score = 687 bits (1772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/535 (61%), Positives = 424/535 (79%) Query: 1 MYNVLVADDEPRHRRGIADMIKQLRPEYRIFMVKDGLEALRIIEDNRIDIILTDIRMPNM 60 MY+VL+ DDEPRHRRGIA+MIK LRP+YR+FM KDG EALRI NRIDI TDIRMPNM Sbjct: 1 MYHVLIVDDEPRHRRGIAEMIKTLRPDYRLFMAKDGAEALRIAIANRIDITFTDIRMPNM 60 Query: 61 DGLTLIERMESRRERVKIVILSVYGNFEYARQALQLGAFDYLLKPLAFPELSGILDKLDT 120 DG LIE++ R E +KIVILSVYG+F+YAR+AL+ GAFDYLLKPL ++S +L+KLDT Sbjct: 61 DGFALIEQLVERSESMKIVILSVYGHFDYARKALKFGAFDYLLKPLESRDMSDMLNKLDT 120 Query: 121 ALEKERLSLQDGAVLRQRLSSAAPVYEQHLLSRWMRSASSEEELQEIRSLFPAVSGGFVM 180 A+EKER+ LQDGA L+++L+S PVYEQHLLSRW+RS ++E+EL+EI L P GFV+ Sbjct: 121 AIEKERMRLQDGANLQEKLNSTIPVYEQHLLSRWVRSVANEDELREIEGLVPQGQVGFVI 180 Query: 181 LAKFQKREVAEFYTLEDFEELKTSVINWMKEIYQTVGPSLSFNLEGADPMIGSIVTSAHS 240 +AK K E+ E Y E+F E+K S+ +WM ++ +++GP+LSF L+G +PM+ S++T AHS Sbjct: 181 VAKLSKSEIDEKYHGEEFTEVKASLKDWMGQVAESIGPTLSFYLDGDEPMLISVITPAHS 240 Query: 241 LEWLLKRDMEQFRQFIRQVRDEFGLTLTLGAGNWVADLYSEAPQSFEQAQKALEYTFYTG 300 LEWL+KR+ E+ +FI +VR EFGLTL++G G+ V DLY EAP+SF+QA AL+YTFY G Sbjct: 241 LEWLMKREAERLTEFIDRVRLEFGLTLSIGVGDGVVDLYREAPRSFKQALHALDYTFYCG 300 Query: 301 AGQLVLFDEIAYNPDKPSLKMVPADTGITDALARLDRDTVAQALKTLIGRLLEGDCPSPA 360 +G++V+ IAYNP KPSL++VPA+TGI A+A +R+ ++L LI +LL+GD PSP+ Sbjct: 301 SGKVVVNYGIAYNPYKPSLELVPAETGIAAAVANREREKAIESLSLLIRQLLDGDYPSPS 360 Query: 361 HLKDCVLYALVNEVKGSELFLRQEEVSNFISEMEFQIPACESLDEVEKRAAFYLNRIMDS 420 HLK +LY LVN VK SE +R EE +NF+SEMEFQIPAC +LDEVE++A +YLNRI+DS Sbjct: 361 HLKHSILYVLVNLVKASEASIRSEEANNFVSEMEFQIPACATLDEVEEKAGYYLNRIIDS 420 Query: 421 IGERKENKSGRTISLCKAFLEAHYMEDLSLEYVARQXXXXXXXXXXXXKQHTSLTFTEYL 480 I R+ NK+ R I++CKA+L HYMEDLSLE VA++ + HTS+TFTEYL Sbjct: 421 IENRRNNKNERIIAMCKAYLAEHYMEDLSLELVAKRFFFSPAYFSSFFRSHTSMTFTEYL 480 Query: 481 LRLRMDKAKELLQNGDLKISAIALSVGFRDAGYFTRVFKRETGLSPEEFRKKDVL 535 L+LRMDKA ++L+ G+ KIS IALSVGFRDAGYFTR+FKRETGLSPEEFRKKD+L Sbjct: 481 LKLRMDKAMQMLEGGNRKISEIALSVGFRDAGYFTRIFKRETGLSPEEFRKKDLL 535 >B1D4P3.1 B1D4P3_9BACL Two component transcriptional regulator, AraC family Length = 538 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 162/552 (29%), Positives = 268/552 (48%), Gaps = 40/552 (7%) Query: 1 MYNVLVADDEPRHRRGIADMIKQLRPEYRIFM-VKDGLEALRIIEDNRIDIILTDIRMPN 59 MY +L+ DDE R GI + I +R ++G++AL IE R I+LTDI MP Sbjct: 1 MYTILLVDDEAVVREGIRERIPWEELGFRCVADCENGVQALEEIERLRPHIVLTDINMPF 60 Query: 60 MDGLTLIERMESRRERVKIVILSVYGNFEYARQALQLGAFDYLLKPLAFPELSGILDKLD 119 MDGL L + R K+VIL+ Y +FEYA+QAL+L D++LKP+ E S +L KL Sbjct: 61 MDGLALSREVMERYPETKVVILTGYDDFEYAQQALKLKVKDFILKPVTAAEFSAMLHKLR 120 Query: 120 TALEKERLSLQDGAVLRQRLSSAAPVYEQHLLSRWMRSASSEEELQ------EIRSLFPA 173 L++E+ +D A L+ +L + P+ ++ L R A +E+E+ +I+ P Sbjct: 121 LELDEEKREREDLARLQSQLHESMPLLKERFLERMSTMALTEKEIASRLHYFQIQLKGPC 180 Query: 174 VSGGFVMLAKFQKREVAEFYTLEDFEELKTSVINWMKEIYQTVGPSLSFNLEGADPMIGS 233 G + + +++ A+ D E L+ +V N +EI ++ F + + + Sbjct: 181 YLGLAIDTDRLEEQGGAD----TDRELLRFAVYNIAQEIISGEPGAVVFR--SREERVMA 234 Query: 234 IVTSAHSLEWLLKRDMEQFRQFIRQVRDEF-GLTLTLGAGNWVADLYSEAPQSFEQAQKA 292 ++ E LL+ ++ + IRQ +F LT+++G G V Y+ ++ + A A Sbjct: 235 VLGGER--EELLQEKAQELAERIRQSAVQFLKLTVSVGIGMTVHS-YTGIRETCKAAAAA 291 Query: 293 LEYTFYTGAGQLVLFDEIAYNPDKPSLKMVPADTGITDALARLDRDTVAQALKTLIGRLL 352 L+Y G ++ ++ P+ D + + D V +A++ LI R Sbjct: 292 LDYRLVLGDNSVISILDMEKRRSSPAGHPAQFDRELIAGIKTGTADEVERAIEALI-RYN 350 Query: 353 EGDCPSPAHLKDC----------VLYALVN-EVKGSELFLRQEEVSNFISEMEFQIPACE 401 + + S H C V+ AL + K SE+F E N ++E+ ++ E Sbjct: 351 KAELTSIDH---CYLRIQRTILAVMQALGDIGCKESEVF---GEGVNPMTEI-YRFRTME 403 Query: 402 SLDEVEKRAAFYLNRIMDSIGERKENKSGRTISLCKAFLEAHYM-EDLSLEYVARQXXXX 460 + E K A + + S+ + ++ I A+LE+HY E+LS++ V +Q Sbjct: 404 EIGEWLKTAC---RQAVHSVTATRHDQCRSQIEEAIAYLESHYEDENLSVKAVCKQVHMS 460 Query: 461 XXXXXXXXKQHTSLTFTEYLLRLRMDKAKELLQNGDLKISAIALSVGFRDAGYFTRVFKR 520 K HT TF EY +RMDKAKELL+ L+ IA G+ DA YF+ +FK+ Sbjct: 461 VSYFSAAFKSHTGRTFIEYATAVRMDKAKELLKFTGLRTYEIAARTGYSDAQYFSVLFKK 520 Query: 521 ETGLSPEEFRKK 532 TG SP ++R + Sbjct: 521 HTGESPTDYRHR 532 >A4XMG0.1 A4XMG0_CALS8 Two component transcriptional regulator, AraC family Length = 529 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 149/562 (26%), Positives = 268/562 (47%), Gaps = 61/562 (10%) Query: 1 MYNVLVADDEPRHRRGIADMIKQLRPEYRIF-MVKDGLEALRIIEDNRIDIILTDIRMPN 59 M +L+ADDEP GI+ ++ +I +G EAL I DI+L DI+MP Sbjct: 1 MTKLLIADDEPEVIEGISTLVDWESNGIKIVGCATNGEEALEKIRMLCPDIVLIDIKMPK 60 Query: 60 MDGLTLIERMESRRERVKIVILSVYGNFEYARQALQLGAFDYLLKPLAFPELSGILDKLD 119 +DGL +IE + + +ILS Y +F +A++AL+L + +YLLKP E+ + K Sbjct: 61 LDGLQVIEYAKKEGYIFESIILSGYDDFYFAQKALELRSLNYLLKPCKPKEVLDAVLKAK 120 Query: 120 TALEKERLSLQDGAVLRQRL---SSAAPVYEQHLLSRWMRSASSEEELQEI--RSLFPAV 174 LEKER + A++ + + + P+ ++ +L+ + S+EE++++ R Sbjct: 121 NVLEKER---EKEALINRFIEYYNETLPILKERILNEVIFGIRSKEEIEKLFERYNIKLS 177 Query: 175 SGGF-VMLAKFQKREVA----------EFYTL-------EDFEELKTSVINWMKEIYQTV 216 SG + + LAKF V+ E YTL ++ E+ + V EI + Sbjct: 178 SGKYCIALAKFDIENVSDTYPTSFVKQEAYTLACVNLIQKELEDFRAEVFRGRNEIVILI 237 Query: 217 GPSLSFNLEGADPMIGSIVTSAHSLEWLLKRDMEQFRQFIRQVRDEFGLTLTLGAGNWVA 276 F+ E D ++ + R ++ G+ L G W Sbjct: 238 NSDFEFDRETIDTILTKVK---------------------RNASEKLGVKLYFGVSRW-G 275 Query: 277 DLYSEAPQSFEQAQKALEYTFYTGAGQLVLFDEIAYNPDKPSLKMVPADTGITDALARLD 336 D + +EQA ALE F+ ++ FD+I + + + + + I ++L Sbjct: 276 DKIEKINSLYEQALNALELKFFADDIDILHFDDICLSKN-TTYYPIDEERSIINSLLLCQ 334 Query: 337 RDTVAQALKTLIGRLLEGDCPSPAHLKDCVLYALVNEVKGSELFLRQE---EVSNFISEM 393 +D + +++ I L + + +K VL L GS + + E ++++ +S Sbjct: 335 KDVIKDKVESFINSLYSTNTFNKWFIKSAVLALL-----GSLIKVCHEKCIDLNDVVSSK 389 Query: 394 EFQ-IPACESLDEVEKRAAFYLNRIMDSIGERKENKSGRTISLCKAFLEAHYMEDLSLEY 452 F+ I E + ++ +LN +D I E+ ENK+ + +F+E +Y ++++LE Sbjct: 390 IFENILKTEKKELIKASLLSFLNATVDKI-EQIENKN-LIVKAAISFIEKNYNKNITLES 447 Query: 453 VARQXXXXXXXXXXXXKQHTSLTFTEYLLRLRMDKAKELLQNGDLKISAIALSVGFRDAG 512 VA++ K+ + F +YL ++R+ KA+ELL+N +LK +A VGF D Sbjct: 448 VAKEVYVTPAYLSILFKRELKINFVDYLHKIRIQKAQELLKNQNLKTYQVANMVGFSDEK 507 Query: 513 YFTRVFKRETGLSPEEFRKKDV 534 YF++VFK+ TGL+P +FR+ ++ Sbjct: 508 YFSQVFKKYTGLTPSQFREANI 529 >B3KJG1.1 B3KJG1_9BACI Response regulator receiver Length = 539 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 149/552 (26%), Positives = 259/552 (46%), Gaps = 41/552 (7%) Query: 1 MYNVLVADDEPRHRRGIADMIKQLRPEYR-IFMVKDGLEALRIIEDNRIDIILTDIRMPN 59 MY +L+ DDEP R GI + I+ Y I ++G +AL + ++ D++LTDI MP Sbjct: 1 MYTILIVDDEPIVREGIRNRIQWSEHGYECIGDCENGRDALEAVTRHQPDVVLTDINMPY 60 Query: 60 MDGLTLIERMESRRERVKIVILSVYGNFEYARQALQLGAFDYLLKPLAFPELSGILDKLD 119 MDGL L + R + KI+IL+ + +FEYA+QA++L D++LKP+ EL +LDKL Sbjct: 61 MDGLELSRHITERFPKTKIIILTGFDDFEYAQQAVKLQVTDFILKPVTAAELRDMLDKLK 120 Query: 120 TALEKERLSLQDGAVLRQRLSSAAPVYEQHLLSRWMRSASSEEELQEIRSLFPAVSGG-- 177 +++ER + L+++L+ + + + L R S E++ F G Sbjct: 121 LEMDEERGHTEHLKRLKKQLNESLVLLRERFLERLASSPMKRSEMESRLDYFDIPLRGPL 180 Query: 178 -FVMLAKFQKREVAEFYTLEDFEELKTSVINWMKEIYQTVGPSLSFNLEGADPMI---GS 233 M A + E + D E ++ N M+EI + F + M GS Sbjct: 181 YIAMAADMDELRSDEQHA--DNELHAFALYNIMQEILAGEPGAAVFRYKENKVMTILSGS 238 Query: 234 IVTSAHSLEWLLKRDME-QFRQFIRQVRDEFGLTLTLGAGNWVADLYSEAPQSFEQAQKA 292 H+ L D+ +QF++ T+T+G G +L + S + ++ A Sbjct: 239 DEKDLHARAQELAEDIRGSTKQFMK-------FTVTVGIGTICREL-QDIRYSCKASEAA 290 Query: 293 LEYTFYTGAGQLVLFDEIAYNPDKPSLKMVPADTGITDALARLDRDTVAQALKTLIGRLL 352 LEY G Q+V ++ P L + +T + A+ R +K I RL+ Sbjct: 291 LEYRLLIGRDQVVHITDLEKRGSGPLLDGIETETALVSAI----RAGTGSEVKACIRRLI 346 Query: 353 EGDCPSPAHLKDC------VLYALVNEV-----KGSELFLRQEEVSNFISEMEFQIPACE 401 + ++ C V+ A++ + G+EL +++ + + + + Sbjct: 347 NEIGSASISIELCYVRVLRVMLAVLQTLMEIGSNGNELIGKEKRLLS-------DLYSFR 399 Query: 402 SLDEVEKRAAFYLNRIMDSIGERKENKSGRTISLCKAFLEAHYM-EDLSLEYVARQXXXX 460 SLDE+E+ + + + + +++ + + F++ HY E+LS++ V + Sbjct: 400 SLDEIERWLNEVCEQALRDVAKTRKDIARSQMLEAVDFIQRHYEDEELSIKTVCSRIFMS 459 Query: 461 XXXXXXXXKQHTSLTFTEYLLRLRMDKAKELLQNGDLKISAIALSVGFRDAGYFTRVFKR 520 K HT TF EY+ +RM+KAKELL++ LK IA G++D YF+ +FK+ Sbjct: 460 TSYFSALFKSHTGKTFVEYVTEVRMEKAKELLKHSLLKTYEIAAKTGYQDPQYFSVLFKK 519 Query: 521 ETGLSPEEFRKK 532 TG +P E+R K Sbjct: 520 HTGDTPTEYRNK 531 >B0P6G3.1 B0P6G3_9FIRM Putative uncharacterized protein Length = 532 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 153/553 (27%), Positives = 260/553 (47%), Gaps = 56/553 (10%) Query: 5 LVADDEPRHRRGIADMIKQLRPEYR-IFMVKDGLEALRIIEDNRIDIILTDIRMPNMDGL 63 ++ DDE R GI I + + ++G EAL + E D+++TDI+MP MDGL Sbjct: 1 MLVDDEAEIRDGIQRKIDWTGSGFTFVGSAENGQEALELAESLHPDVVMTDIKMPFMDGL 60 Query: 64 TLIERMESRRERVKIVILSVYGNFEYARQALQLGAFDYLLKPLAFPELSGILDKLDTALE 123 TL + R VK+V S + +FEYA++A+Q+GA +Y+LKP++ EL+G+L KL L+ Sbjct: 61 TLGRHLTERFPGVKLVFFSGFDDFEYAQKAIQIGAAEYILKPVSASELTGVLQKLRGQLD 120 Query: 124 KERLSLQDGAVLRQRLSSAAPVYEQHLLS-----RWMRSASSEEE----LQEIRSLFPAV 174 E +D LR + P ++ R R +E+ +Q + + F A Sbjct: 121 AEFAEKRDIERLRSYYERSLPALRGQFVAGLLDGRIPRGQIAEQAALYGVQLVGTQFTAA 180 Query: 175 SGGFVM----LAKFQKREVAEFYTLEDFEELKTSVINWMKEIYQ-TVGPSLSFNLEGADP 229 GF A ++RE+ +F + EE + E+Y +V F+ DP Sbjct: 181 LAGFESDIPEDAPIRQRELLQFSVKQLMEEALGRRFRGLTELYNGSVAVIAGFD----DP 236 Query: 230 MIGSIVTSAHSLEWLLKRDMEQFRQFIRQVRDEFGLTLTLGAGNWVADLYSEAPQSFEQA 289 G ++ SL+ + K R+F++ LTLT+G G V D + S + A Sbjct: 237 --GGVLEFISSLDQVCKLA----RRFLQ-------LTLTVGVGT-VCDTLFDLHYSMDGA 282 Query: 290 QKALEYTFYTGAGQLVLFDEIAYNPDKPSLKMVPADTG----ITDALARLDRDTVAQALK 345 + AL+Y G G+ + D+I PD + +P D + A+ DT+ Q++ Sbjct: 283 RSALDYRVLIGTGRAIYIDDI--EPDAAA--QIPFDEQDKRELLSAIKLGAPDTIRQSIN 338 Query: 346 TLIGRLLEGDCPSPAH-------LKDCVLYALVNEVKGSELFLRQEEVSNFISEMEFQIP 398 IGR E P + + V A ++ +++F +F + + + Sbjct: 339 RFIGRFYETRLPIGQYQLYLMELTAELVRLARAYQLDTADVF-----GPDFAASLRLE-- 391 Query: 399 ACESLDEVEKRAAFYLNRIMDSIGERKENKSGRTISLCKAFLEAHYME-DLSLEYVARQX 457 A +SLDE++ R + RI + I + N + K F+ H+ + D+S+E + Sbjct: 392 AFDSLDELKARLSELCLRISELIRRERSNSTRGIAEGAKQFIAEHFSDPDISVEMLCDHL 451 Query: 458 XXXXXXXXXXXKQHTSLTFTEYLLRLRMDKAKELLQNGDLKISAIALSVGFRDAGYFTRV 517 K+ T ++F +L +RMD+A +LL + K I+L VG+ + YF+ V Sbjct: 452 HVSPAYFSTLFKKETGMSFVAWLTNVRMDEAVKLLSTTEDKTYEISLKVGYTEPNYFSYV 511 Query: 518 FKRETGLSPEEFR 530 FK++ G+SP ++R Sbjct: 512 FKKQFGMSPTKYR 524 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,906,038,947 Number of extensions: 114873974 Number of successful extensions: 403722 Number of sequences better than 1.0e-05: 12853 Number of HSP's gapped: 417550 Number of HSP's successfully gapped: 13330 Length of query: 535 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 394 Effective length of database: 1,732,333,088 Effective search space: 682539236672 Effective search space used: 682539236672 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)