BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0006.p (595 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K644.1 B3K644_9BACI Histidine kinase internal region 890 0.0 B1D784.1 B1D784_9BACL Histidine kinase internal region 444 e-122 A9U830.1 A9U830_PHYPA Predicted protein (Fragment) 228 1e-57 C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein 211 3e-52 C5EHM0.1 C5EHM0_9FIRM Histidine kinase internal region 196 6e-48 >B3K644.1 B3K644_9BACI Histidine kinase internal region Length = 598 Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/591 (72%), Positives = 491/591 (83%), Gaps = 1/591 (0%) Query: 1 MKLKNKLILSYIVLITLPLTILGFGYYYASKEIMLKLARDNVSEIVLKNNQIINERLKII 60 M+LKNKLILSYI+LITLPL LG G +YASK +MLKLARDNV+EIV KNNQII+ERLKII Sbjct: 1 MRLKNKLILSYIILITLPLVTLGTGSFYASKNMMLKLARDNVTEIVQKNNQIIDERLKII 60 Query: 61 QDDSLSLMVECQLYQIFDGSGPAGGQQLLATNKKVTEILGRYFSPSADLYSAELVTRAFV 120 QD+SLSLMVEC L+QIFDG+ PA +LLATNK+VTEIL RYFS S DLYS ELVTRAFV Sbjct: 61 QDNSLSLMVECDLFQIFDGAAPAQ-SKLLATNKQVTEILNRYFSQSRDLYSVELVTRAFV 119 Query: 121 YGNKNKNTYPPDHFYSSELYRAAAEGKGRIAWVPTYDYTRMHALPELAGSNIEYRYMFSA 180 YG+K +NTYPPDHFY SELYR A+E KGR+AWVPTYDY+ MH LP+LAG++IEYRY+FSA Sbjct: 120 YGSKARNTYPPDHFYDSELYRQASEQKGRLAWVPTYDYSLMHQLPDLAGADIEYRYLFSA 179 Query: 181 VRQINPSCVRNDSIVRASPGSEKPVLVMNFKDDVYANIFRDSIPIQGSVFLVASENGTMI 240 VRQ+NPSCVRND+IVRA GSEKPVLVMNF+D +YA++FR+SIPI+GSVFLVA +GT+I Sbjct: 180 VRQMNPSCVRNDAIVRARAGSEKPVLVMNFRDGLYADLFRNSIPIEGSVFLVAGADGTII 239 Query: 241 AHQDKMRIGTVEPAAWLKELRSKGSGTAYVTAGGKRMIACFALSPVTNWLSVVLIPPGAL 300 +H + +G WL E++++GSG ++V GKR IAC+ S +T W SVVLIPPGAL Sbjct: 240 SHANAEFVGRKPSFPWLAEVQNRGSGASFVMVDGKRTIACYTTSAITGWTSVVLIPPGAL 299 Query: 301 THDIADTXXXXXXXXXXXXXXXXXXXXXXXXXRISSPVSKLLLAIKRVGGGDFNAQIKVE 360 T DI T RI+SPV KLLLAIKRVGGGDFNA+IKVE Sbjct: 300 TKDIGQTITFFILTLGASLLLLSLFFAYLISMRITSPVRKLLLAIKRVGGGDFNAKIKVE 359 Query: 361 GRDELGHVLMKFNSMNEQVRELINENYVVKLRERETEILALNIQLNPHFLYNTLNIINWM 420 G+DELGHVLMKFNSMNE+VR+LI ENYV KLRERETEILAL IQLNPHFLYNTLNIINWM Sbjct: 360 GKDELGHVLMKFNSMNEKVRQLIEENYVAKLRERETEILALGIQLNPHFLYNTLNIINWM 419 Query: 421 AVYGEKEQVSNMLISLSRMLHYTTDNRRDLMLLREDIAWLQDYIVIMANRFEHRFRVDFD 480 AVYGEKEQVS ML+SLSRMLHYTTDNR+D M L EDI WLQDYIVIM+NRFEHRFRVDFD Sbjct: 420 AVYGEKEQVSRMLVSLSRMLHYTTDNRKDSMPLSEDIGWLQDYIVIMSNRFEHRFRVDFD 479 Query: 481 IQPELLEVSVPKLFLQPLVENAIIHGFRNMESGGLITIYGQRQGDDIRFCVEDNGSGIEP 540 I+PEL++ VPKLFLQPLVENAIIHGFR+MESGGLITIYG+ GDDI FCVEDNG G EP Sbjct: 480 IEPELMKARVPKLFLQPLVENAIIHGFRDMESGGLITIYGRSLGDDIEFCVEDNGCGFEP 539 Query: 541 ERLEQLLKAESPNIGLKNVDKRIKLLYGGKHGIEIESVPEFGTRVKLVIPY 591 ERL++ L + +IG+ NVDKRIKLLYG ++GI IESVPE GTRVKLVIP+ Sbjct: 540 ERLKEALAENASHIGIHNVDKRIKLLYGDRYGIGIESVPELGTRVKLVIPH 590 >B1D784.1 B1D784_9BACL Histidine kinase internal region Length = 591 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/576 (38%), Positives = 347/576 (60%), Gaps = 3/576 (0%) Query: 15 ITLPLTILGFGYYYASKEIMLKLARDNVSEIVLKNNQIINERLKIIQDDSLSLMVECQLY 74 I LPL +L +Y +S +++ + A++NV ++V+KNN +I+ +L I+ +S SL V+ L+ Sbjct: 15 IALPLLVLSTLFYNSSLKVVTEQAQNNVHDVVMKNNDVIDTKLGIVDQNSRSLFVDKDLF 74 Query: 75 QIFDGSGPAGGQQLLATNKKVTEILGRYFSPSADLYSAELVTRAFVYGNKNKNTYPPDHF 134 QIF+ PA ++L+A +++VT IL +YFS ++D+Y+A+L T + +G+ P Sbjct: 75 QIFNNLNPAKEEELVAADRQVTAILSKYFSQNSDVYAAQLWTSYYTFGSTM--LMPLGDP 132 Query: 135 YSSELYRAAAEGKGRIAWVPTYDYTRMHALPELAGSNIEYRYMFSAVRQINPSCVRNDSI 194 S +Y+ A + G++ W PTYD+ +M+ L I+YRY+FSA R +N S + + ++ Sbjct: 133 VQSAIYKEAVKAGGKMVWYPTYDFIKMYDQHWLQDGTIDYRYLFSATRLLNFSHMEDSTL 192 Query: 195 VRASPGSEKPVLVMNFKDDVYANIFRDSIPIQGSVFLVASENGTMIAHQDKMRIGTVEPA 254 V+ P E+PVL ++FK V +F SIP GS ++V + ++A D+ ++ Sbjct: 193 VKLKPEVERPVLAISFKSTVMDELFEKSIP-AGSSYMVLDPDNIVVASSDQSQVTKRFDE 251 Query: 255 AWLKELRSKGSGTAYVTAGGKRMIACFALSPVTNWLSVVLIPPGALTHDIADTXXXXXXX 314 W+ + R +GSG+ + G I FA S VT W+S+V+ P L + Sbjct: 252 DWMNDFREQGSGSERIKLNGHNQIVSFARSEVTGWMSIVITPQSVLVSSLVPVLRTSTIV 311 Query: 315 XXXXXXXXXXXXXXXXXXRISSPVSKLLLAIKRVGGGDFNAQIKVEGRDELGHVLMKFNS 374 RI+ P+ KL+ A++ VG GDF A++ V+ +DE G + +FN Sbjct: 312 SAIALSAVALLFAYFIISRITGPIKKLMSAMRSVGEGDFEARVDVDRKDEFGLLSQRFNR 371 Query: 375 MNEQVRELINENYVVKLRERETEILALNIQLNPHFLYNTLNIINWMAVYGEKEQVSNMLI 434 MN+++ L+ ENY +KL+E+E EI ALN+Q+NPHFLYNTLNI+NW A+ + ++S ML+ Sbjct: 372 MNDRIAMLVKENYEIKLKEKEAEIQALNMQMNPHFLYNTLNIMNWTALENRQTELSKMLV 431 Query: 435 SLSRMLHYTTDNRRDLMLLREDIAWLQDYIVIMANRFEHRFRVDFDIQPELLEVSVPKLF 494 LS MLHYT+ + + L E++ W+++Y IM+ RFE +F V ++I+P L E +P+L Sbjct: 432 CLSNMLHYTSRKDWEAVHLSEELEWMRNYFFIMSARFEGKFTVAYEIEPVLYENKLPRLL 491 Query: 495 LQPLVENAIIHGFRNMESGGLITIYGQRQGDDIRFCVEDNGSGIEPERLEQLLKAESPNI 554 QP VENAI+HGF +E GG ITI G + D F V DNG GI E ++ +L ES +I Sbjct: 492 FQPFVENAILHGFSGVEEGGQITIRGWIEDDSRYFEVRDNGRGISKEGIDAILYKESASI 551 Query: 555 GLKNVDKRIKLLYGGKHGIEIESVPEFGTRVKLVIP 590 G+KN RI++ YG ++GI I S P GT + + +P Sbjct: 552 GIKNTISRIRMAYGDEYGIRIHSAPGKGTSIVIHLP 587 >A9U830.1 A9U830_PHYPA Predicted protein (Fragment) Length = 367 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 197/368 (53%), Gaps = 7/368 (1%) Query: 93 KKVTEILGRYFSPSADLYSAELVTRAFVYGNKNKNTYPP-DHFYSSELYRAAAEGKGRIA 151 KKV+ + YF +YS L+T G T+ P + F + LY+AA + G +A Sbjct: 3 KKVSRAMNTYFPDLKHMYSIHLITSYSDIGPTGATTFIPYEGFNQTALYQAAVQADGGMA 62 Query: 152 WVPTYDYTRMHALPELAGSNI--EYRYMFSAVRQINPSCVRNDSIVRASPGSEKPVLVMN 209 WVPT+ + M AGS + E + + VR + + N ++ +E PVLV+ Sbjct: 63 WVPTFSFGDM--FHRDAGSPVPSENVQLLAGVRLLKLFRINNGEVIELQGAAELPVLVIT 120 Query: 210 FKDDVYANIFRDSIPIQGSVFLVASENGTMIAHQDKMRIGTVEPAAWLKELRSKGSGTAY 269 ++ D Y + F +P G+ F + S +G +A D + LK + SGT Sbjct: 121 YQPDYYRSRFASVLPSTGASFFIMSRDGQRVA--DSQEKDSTMDDTSLKRMAEMKSGTLT 178 Query: 270 VTAGGKRMIACFALSPVTNWLSVVLIPPGALTHDIADTXXXXXXXXXXXXXXXXXXXXXX 329 +T GK +I CF S VT W+S V+I P AL Sbjct: 179 ITRNGKPLIVCFDTSDVTGWISGVMISPEALGSAFLPEVKSYTFYLTLILLLLSLLLAFF 238 Query: 330 XXXRISSPVSKLLLAIKRVGGGDFNAQIKVEGRDELGHVLMKFNSMNEQVRELINENYVV 389 I+ P+ +LL AIK+ G G+F+ +I V+ +E+G ++ K+N MN ++ LI ENY V Sbjct: 239 LANSITKPIQQLLRAIKKTGEGEFDTRIPVKSYNEMGLLIHKYNQMNVKINNLIEENYKV 298 Query: 390 KLRERETEILALNIQLNPHFLYNTLNIINWMAVYGEKEQVSNMLISLSRMLHYTTDNRRD 449 KLRE+ET+I++LNIQLNPHFLYNTLNI+NW A+ E+ ++S M++SLS ML YT+ + +D Sbjct: 299 KLREKETQIMSLNIQLNPHFLYNTLNIMNWTALENEQNELSAMIVSLSSMLQYTSASNQD 358 Query: 450 LMLLREDI 457 + L ED+ Sbjct: 359 IGDLEEDL 366 >C0C1J1.1 C0C1J1_9CLOT Putative uncharacterized protein Length = 601 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 162/624 (25%), Positives = 296/624 (47%), Gaps = 68/624 (10%) Query: 1 MKLKNKLILSYIVLITLPLTILGFGYYYASKEIMLKLARDNVSEIVLKNNQIINERLKII 60 +K+KNKL + +I++I + +++LG+ S++ + D++ E + + + I ++ + Sbjct: 9 LKMKNKLFIGFILVIAVLVSLLGYFSMTFSEQSIRTQMLDSIQETMNQMGENIEGEIQKV 68 Query: 61 QDDSLSLMVECQLYQIFDGSGPAGGQQLLATNKKVTEILGRYFSPSADLYSAELVTRAFV 120 D S + + +L + P ++ + +K + +IL + A +S E V FV Sbjct: 69 LDVSAQVCLNEELCTVLQEEKPGTIEEYYSKDKTMRQILNESY---AAYFSVEDV---FV 122 Query: 121 YGNKNKNTYPPDHFYSSELYRAAAEGKGRIAWVPTYDYTRMHALPEL----AGSNIEYRY 176 + N + Y D K +++ YD+TR ++ AG +I +Y Sbjct: 123 -CSYNGSVYGSD--------------KNKLSLTADYDFTRTGWFADMKQSGAGVSILSQY 167 Query: 177 -------------MFSAVRQINPSCVRNDSIVRASPGSEKPVLVMNFKDDVYANIFRDSI 223 +FS V++I G E L+++ D+ N+ + Sbjct: 168 DSSSYISTGEPQKLFSIVKKI----------YNYRSGKEIGCLIVHMNSDILGNVLQSVN 217 Query: 224 PIQGSVFLVASENGTMIAHQDKMRIGTVEPAAWLKELRSKGSGTAYVTAGGKRMIACFAL 283 + L+ N +I H D IGT A + EL + +G Y+ + ++ F+ Sbjct: 218 SNEYQQCLIIDNNKKIIYHPDSDYIGTQYREARVSELLTMENG--YMESLSEKGYLVFST 275 Query: 284 SPVTNWLSVVLIPPGALTHDIADTXXXXXXXXXXXXXXXXXXXXXXXXXRISSPVSKLLL 343 S VT W SV+ + D + IS PV++L Sbjct: 276 SAVTGW-SVISVVDNKYIMDSINRLRLFLILTAVFCVVLSVYFASYISKTISDPVARLQR 334 Query: 344 AIKRVGGGDFNAQIKVEGRDELGHVLMKFNSMNEQVRELINENYVVKLRERETEILALNI 403 + +VG GDF+ + DE+G + + F+ M E+ ++LI Y ++ ++E E+ AL Sbjct: 335 KMYQVGEGDFDIRAATGASDEIGQLTLSFDKMVERTKQLIENVYQSEIYQKEAELNALQA 394 Query: 404 QLNPHFLYNTLNIINWMAVYGEKEQVSNMLISLSRMLHYTTDNRRDLMLLREDIAWLQDY 463 Q+NPHFLYNTL I+ MA +++S+ +LS++ Y+ + ++ + ++++I +++Y Sbjct: 395 QINPHFLYNTLQTIDMMAEEEGADEISDACQALSKIFRYSINRGQEFVHVQDEIVHIENY 454 Query: 464 IVIMANRFEHRFRVDFDIQPELLEVSVPKLFLQPLVENAIIHGFRNMESGGLITIYGQRQ 523 ++I RF + V +DIQ E E+ + KL +QP+VENA++HG N+ +TI R+ Sbjct: 455 MLIQKLRFGGKLEVRYDIQNECRELYIVKLLIQPMVENAVVHGMENVLDKCYVTIRVYRK 514 Query: 524 GDDIRFCVEDNGSGIEPERL----EQLLKAESP-------------NIGLKNVDKRIKLL 566 D + VEDNG+GI P +L E+L ++ +IGL+N + RIKL Sbjct: 515 EDCLYAEVEDNGTGIAPGQLMELNEKLARSAEQKMVHEVDYVKNHRSIGLENTNARIKLY 574 Query: 567 YGGKHGIEIESVPEFGTRVKLVIP 590 +G ++GI I S GT+V + +P Sbjct: 575 FGQEYGITITSEEGTGTKVCIKLP 598 >C5EHM0.1 C5EHM0_9FIRM Histidine kinase internal region Length = 605 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 152/612 (24%), Positives = 275/612 (44%), Gaps = 48/612 (7%) Query: 1 MKLKNKLILSYIVLITLPLTILGFGYYYASKEIMLKLARDNVSEIVLKNNQIINERLKII 60 M + KL L +IV + + ++G Y+ S++I++K + +S+ + + + IN +++ I Sbjct: 19 MSFRLKLTLVFIVTVMIEGALIGGFSYFHSRDIVVKNKKQEMSDTINRIDTNINVKVRYI 78 Query: 61 QDDSLSLMVECQLYQIFDGSGPAGGQQLLATNKK--VTEILGRYFSPSADLYSAELVTRA 118 + ++ ++ G+ G Q + ++ + + + +++++ Sbjct: 79 ----MEVLDNAADSELVRGACLTGWDQGERSIRRTYLDDYCSSLIKSIGEQMDISIISQS 134 Query: 119 -FVYGNKNKNTYPPDHFYS---SELYRAAAEGKGRIAWVPTYDYTRMHALPELAGSNIEY 174 +Y P +E Y A + + W +P L + Sbjct: 135 GILYTTGENGRVSPGDLSGEMLAEYYDAVGDRHNKAVWAGI--------MPALIAGPEQE 186 Query: 175 RYMFSAVRQINPSCVRNDSIVRASPGSEKPVLVMNFKDDVYANIFRDSIPI-QGSVFLVA 233 R + + R I R D ++ ++V+ D+++N+ + + Q + Sbjct: 187 RQVVTVARAIMDE--RQDRVL--------GIMVIELDPDMFSNLLLGNQGLFQYQYLFIV 236 Query: 234 SENGTMIAHQDKMRIGTVEPAAWLKELRSK---GSGTAYVTAGGKRMIACFALSPVTNWL 290 + G +I K+ G W +E+ + G + GK C + VT W Sbjct: 237 DQKGEVICSNPKVDKG------WQEEIDDRFERGIRRFDLEWRGKEYYVCGQYNGVTGWK 290 Query: 291 SVVLIPPGALTHDIADTXXXXXXXXXXXXXXXXXXXXXXXXXRISSPVSKLLLAIKRVGG 350 S IP L D ++ P+ +L +A+ +V Sbjct: 291 SYSAIPAEGLFPQAKDLSSAIWLVVMMCTIGIALVIAVLVYA-MARPIKRLCVAMSQVQE 349 Query: 351 GDFNAQIKVEGRDELGHVLMKFNSMNEQVRELINENYVVKLRERETEILALNIQLNPHFL 410 GDF ++ +DE+G + FN M +++ LI + Y K+ ++ E+ AL Q+NPHFL Sbjct: 350 GDFTVRVPNRRKDEIGELTDSFNYMVDKINTLIRQVYQEKIAQKNAEVQALQAQINPHFL 409 Query: 411 YNTLNIINWMAVYGEKEQVSNMLISLSRMLHYTTDNRRDLMLLREDIAWLQDYIVIMANR 470 YNTL+ +NWM + E+ +S+++ISL ++ Y ++ + L ++ ++ Y+ I NR Sbjct: 410 YNTLDSVNWMLIDREEYDISDIIISLGSLMRYCIEDENAFVPLDREVEYVISYLKIQKNR 469 Query: 471 FEHRFRVDFDIQPELLEVSVPKLFLQPLVENAIIHGFRNMESGGLITIYGQRQGDDIRFC 530 E + + L + VPKL LQP+VENAI HG + G ++I + GD+I Sbjct: 470 LEDKLEYQVQVDDRLRQEKVPKLILQPMVENAITHGIEPRKQKGKVSILIRDAGDEILVT 529 Query: 531 VEDNGSGIEPERLEQLLKAESPN--------IGLKNVDKRIKLLYGGKHGIEIESVPEFG 582 VED+G G+ PE+L LK E P+ IGL+NVD+RI+L YG ++ I IESV G Sbjct: 530 VEDDGIGMTPEQLNH-LKEELPDLEKEGHTGIGLRNVDRRIRLHYGEQYRIRIESVYGKG 588 Query: 583 TRVKLVIPYPGS 594 T + L IP S Sbjct: 589 TSIHLRIPKENS 600 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,520,482,109 Number of extensions: 147444169 Number of successful extensions: 383407 Number of sequences better than 1.0e-05: 2091 Number of HSP's gapped: 380425 Number of HSP's successfully gapped: 2092 Length of query: 595 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 453 Effective length of database: 1,722,912,073 Effective search space: 780479169069 Effective search space used: 780479169069 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)