BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0004.p (336 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K642.1 B3K642_9BACI Binding-protein-dependent transport system... 542 e-152 B1D782.1 B1D782_9BACL Binding-protein-dependent transport system... 391 e-107 B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport system... 377 e-102 A4U8T9.1 A4U8T9_9BACT Sugar permease 337 7e-91 C5C4B0.1 C5C4B0_9MICO Binding-protein-dependent transport system... 320 2e-85 >B3K642.1 B3K642_9BACI Binding-protein-dependent transport systems inner membrane component Length = 310 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 266/311 (85%), Positives = 294/311 (94%), Gaps = 1/311 (0%) Query: 26 MEPVPSLSVNRPKTKRSSYKNELYGILFALPAILGLLIFTLGPMIYSLYMSFTDYSGSNS 85 ME + S + NR + KR + + ELYG LFALPAILGLLIFTLGPM+YSLYMSFT+Y+GSN+ Sbjct: 1 MEAISSHTGNRMRKKRRT-QRELYGWLFALPAILGLLIFTLGPMMYSLYMSFTNYTGSNT 59 Query: 86 PTFIGLDNYTRMFSGEDQYFYKSLGVTLYFVVLSVPTGIIYSFLLAILLNRNIKGKAIFR 145 P+FIGLDNY R+F GEDQYFYKSL VT YFV+LSVPTGI+YSFLLAILLN+N+KGK+IFR Sbjct: 60 PSFIGLDNYKRIFGGEDQYFYKSLSVTFYFVILSVPTGIVYSFLLAILLNQNVKGKSIFR 119 Query: 146 TVFYLPSIVPIIAISFIWLWLLNPDLGLANEMLRAIGLPGSQWIFGEKSVVPSLALMNLW 205 TVFYLPSIVPIIAISFIWLWLLNPDLGLANE+LR++GLPGSQWIFGEKSVVPSLALMNLW Sbjct: 120 TVFYLPSIVPIIAISFIWLWLLNPDLGLANELLRSLGLPGSQWIFGEKSVVPSLALMNLW 179 Query: 206 TTGGTMIIFLAGLQDIPRSLYEAIEIDGGSKLHKLRNITIPMMTPTIFFNLIMGIINGFQ 265 TTGGTMIIFLAGLQDIPRSLYEAIE+DGGS+L+KLR+ITIPMMTPTIFFNLIMGIINGFQ Sbjct: 180 TTGGTMIIFLAGLQDIPRSLYEAIEMDGGSRLNKLRHITIPMMTPTIFFNLIMGIINGFQ 239 Query: 266 VFSQAYVMTSGGPNNASLFYVFYLYREAFQFSRMGSASAIAWVLFIIIMLLTYMVFKSSK 325 VFSQAYVMT+GGPNNASLFYVFYLYREAFQFSRMGSASAIAWVLF IIM+LTY+VF++S Sbjct: 240 VFSQAYVMTNGGPNNASLFYVFYLYREAFQFSRMGSASAIAWVLFAIIMVLTYVVFRTSN 299 Query: 326 KWVYYEGDEAR 336 KWVYYEGD AR Sbjct: 300 KWVYYEGDGAR 310 >B1D782.1 B1D782_9BACL Binding-protein-dependent transport systems inner membrane component Length = 315 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 194/303 (64%), Positives = 236/303 (77%), Gaps = 2/303 (0%) Query: 33 SVNRPKTKRSSYKNELYGILFALPAILGLLIFTLGPMIYSLYMSFTDYSG-SNSPTFIGL 91 +V R TKR K YG+LF PAILG +I+TLGPMI SLY+S TDY+ ++ +FIGL Sbjct: 13 TVVRKSTKRER-KALFYGLLFTAPAILGFIIYTLGPMIASLYLSLTDYNVFKDTTSFIGL 71 Query: 92 DNYTRMFSGEDQYFYKSLGVTLYFVVLSVPTGIIYSFLLAILLNRNIKGKAIFRTVFYLP 151 DNY ++FSGED FYKSLG T YFV+L VP II SF LAILLN N+KG+AIFRT+ YLP Sbjct: 72 DNYIKLFSGEDDLFYKSLGTTFYFVLLRVPAVIIISFFLAILLNMNVKGRAIFRTIIYLP 131 Query: 152 SIVPIIAISFIWLWLLNPDLGLANEMLRAIGLPGSQWIFGEKSVVPSLALMNLWTTGGTM 211 SIVP +A S IWLWL+NPDLGL N L + LP S W+FGE SV+PS+ L LW GGT+ Sbjct: 132 SIVPAVAASMIWLWLMNPDLGLLNMALNWLHLPTSNWLFGEGSVIPSIVLTTLWGIGGTV 191 Query: 212 IIFLAGLQDIPRSLYEAIEIDGGSKLHKLRNITIPMMTPTIFFNLIMGIINGFQVFSQAY 271 IIFLAGL IP+S YEAI++DGG KLR+IT+PM+TPTIFFN IM II FQVFS+AY Sbjct: 192 IIFLAGLSGIPKSYYEAIDVDGGGWYSKLRHITVPMLTPTIFFNTIMTIIGSFQVFSEAY 251 Query: 272 VMTSGGPNNASLFYVFYLYREAFQFSRMGSASAIAWVLFIIIMLLTYMVFKSSKKWVYYE 331 ++T GGPNN SLF+VFYL+R AF+ + MG ASA+AWVLFIIIM+ T +VFK+SK WV+YE Sbjct: 252 ILTQGGPNNKSLFFVFYLWRTAFRDTEMGYASALAWVLFIIIMIFTVLVFKTSKSWVHYE 311 Query: 332 GDE 334 G++ Sbjct: 312 GEK 314 >B1DGI1.1 B1DGI1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 301 Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust. Identities = 183/292 (62%), Positives = 222/292 (76%) Query: 45 KNELYGILFALPAILGLLIFTLGPMIYSLYMSFTDYSGSNSPTFIGLDNYTRMFSGEDQY 104 K GILFA P I G LIF LGPMI S S ++Y+ IG NY +F G D Sbjct: 10 KEARAGILFASPVIAGFLIFVLGPMIASFIFSLSEYNVITPLKMIGFSNYADLFDGTDPL 69 Query: 105 FYKSLGVTLYFVVLSVPTGIIYSFLLAILLNRNIKGKAIFRTVFYLPSIVPIIAISFIWL 164 FYKSLGVT Y+V+LSVP I+ +F++A+LLN IKGKA FRTVFY+P+IVP +A S IWL Sbjct: 70 FYKSLGVTAYYVILSVPLQILLAFMVALLLNHPIKGKAFFRTVFYMPTIVPAVASSMIWL 129 Query: 165 WLLNPDLGLANEMLRAIGLPGSQWIFGEKSVVPSLALMNLWTTGGTMIIFLAGLQDIPRS 224 WL +PDLGL N++L+ G+PG QWI+ E VPSL LM+LWT GGTM+IFLAGLQ IP+ Sbjct: 130 WLFDPDLGLLNQLLKVFGIPGLQWIYSENLAVPSLVLMSLWTIGGTMVIFLAGLQGIPKH 189 Query: 225 LYEAIEIDGGSKLHKLRNITIPMMTPTIFFNLIMGIINGFQVFSQAYVMTSGGPNNASLF 284 LYE++E+DGG LHKL +ITIP+MTPTIFFNLIMG I FQVF QAY+MT GGPNNA+LF Sbjct: 190 LYESVEVDGGGPLHKLFSITIPLMTPTIFFNLIMGFIGSFQVFGQAYIMTQGGPNNATLF 249 Query: 285 YVFYLYREAFQFSRMGSASAIAWVLFIIIMLLTYMVFKSSKKWVYYEGDEAR 336 Y +YLYREAF+FS MGSASAIAW++F++I+ LT MVFK+S WVY E + R Sbjct: 250 YSYYLYREAFEFSSMGSASAIAWIMFLVILALTLMVFKTSAFWVYSESEGKR 301 >A4U8T9.1 A4U8T9_9BACT Sugar permease Length = 285 Score = 337 bits (865), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 161/285 (56%), Positives = 218/285 (76%), Gaps = 1/285 (0%) Query: 48 LYGILFALPAILGLLIFTLGPMIYSLYMSFTDYSGSNSPTFIGLDNYTRMFSGEDQYFYK 107 ++GILF PA+LG +++ LGP+I SL+++FTD+ + +P +IG N+ ++F+ ED+ F K Sbjct: 1 MWGILFVAPAVLGFVLWQLGPIIGSLFIAFTDWRLAGTPQWIGTGNFEKIFA-EDRLFRK 59 Query: 108 SLGVTLYFVVLSVPTGIIYSFLLAILLNRNIKGKAIFRTVFYLPSIVPIIAISFIWLWLL 167 SLGVT+Y+ + SVP ++ +F LA+LLN+ I+ +FRT+FYLPSIVP+IA S +WLWL Sbjct: 60 SLGVTVYYSLGSVPLRMLVAFALAVLLNQKIRALPVFRTIFYLPSIVPVIASSMLWLWLF 119 Query: 168 NPDLGLANEMLRAIGLPGSQWIFGEKSVVPSLALMNLWTTGGTMIIFLAGLQDIPRSLYE 227 NPD GL N +LR +G P QWI+ SV+P+L LM+LW G MIIFLA LQ +PR LYE Sbjct: 120 NPDFGLLNSILRPLGFPKLQWIYASDSVIPALILMSLWDIGPMMIIFLAALQGVPRQLYE 179 Query: 228 AIEIDGGSKLHKLRNITIPMMTPTIFFNLIMGIINGFQVFSQAYVMTSGGPNNASLFYVF 287 A+EIDGG+ H++R+IT+P++TP I FNLI+ II Q F+QAY+MT GGPNN SL YV Sbjct: 180 AVEIDGGNAWHRMRHITVPIVTPAILFNLILSIIVAMQTFTQAYIMTDGGPNNNSLLYVL 239 Query: 288 YLYREAFQFSRMGSASAIAWVLFIIIMLLTYMVFKSSKKWVYYEG 332 YLYR+AF+ S+MG ASA+AWVLFIII L+ VF+SS +WVYY G Sbjct: 240 YLYRKAFEQSQMGYASALAWVLFIIIAGLSLFVFRSSSRWVYYGG 284 >C5C4B0.1 C5C4B0_9MICO Binding-protein-dependent transport systems inner membrane component Length = 285 Score = 320 bits (819), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 154/286 (53%), Positives = 213/286 (74%), Gaps = 1/286 (0%) Query: 51 ILFALPAILGLLIFTLGPMIYSLYMSFTDYSGSNSPTFIGLDNYTRMFSGEDQYFYKSLG 110 ++ ALPAI+G + FTL PMI SL++S TD++ +P F+G++NY RMFS D F+ SL Sbjct: 1 MMMALPAIIGFVAFTLAPMIASLFISLTDWTIGAAPQFVGVENYVRMFS-ADSSFFSSLW 59 Query: 111 VTLYFVVLSVPTGIIYSFLLAILLNRNIKGKAIFRTVFYLPSIVPIIAISFIWLWLLNPD 170 T+Y+ + +VP II +F++A+LLN N++G+++FR ++Y+P+IVPI+A S +W+WL NPD Sbjct: 60 ATVYYTLGAVPLSIIVAFVVALLLNANVRGQSVFRVIYYIPAIVPIVANSMLWIWLFNPD 119 Query: 171 LGLANEMLRAIGLPGSQWIFGEKSVVPSLALMNLWTTGGTMIIFLAGLQDIPRSLYEAIE 230 GL N L +GLPGS WIF E++ VPSL LM W G +IFLAGLQ +PR LYEAI Sbjct: 120 FGLLNSALARVGLPGSDWIFAEETAVPSLILMATWGFGNIAVIFLAGLQGVPRHLYEAIS 179 Query: 231 IDGGSKLHKLRNITIPMMTPTIFFNLIMGIINGFQVFSQAYVMTSGGPNNASLFYVFYLY 290 +DGG K R+IT+PMMTP IF++++ G+I QVF QA VMT GGPN+A+LF+V+YLY Sbjct: 180 VDGGGAWSKFRHITLPMMTPVIFYSVVTGVIGALQVFVQAAVMTEGGPNDATLFFVYYLY 239 Query: 291 REAFQFSRMGSASAIAWVLFIIIMLLTYMVFKSSKKWVYYEGDEAR 336 R AF + MG ASA+AW+LF+IIM +T ++F++S KWVYYE R Sbjct: 240 RTAFTNNEMGYASALAWILFLIIMAITVLLFRNSNKWVYYEAGTGR 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,129,866,903 Number of extensions: 92988578 Number of successful extensions: 334420 Number of sequences better than 1.0e-05: 5959 Number of HSP's gapped: 322475 Number of HSP's successfully gapped: 5984 Length of query: 336 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 200 Effective length of database: 1,779,438,163 Effective search space: 355887632600 Effective search space used: 355887632600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)