BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0272.0003.p (151 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K641.1 B3K641_9BACI Binding-protein-dependent transport system... 229 8e-59 C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport system... 158 1e-37 B1D781.1 B1D781_9BACL Binding-protein-dependent transport system... 157 3e-37 C5C2P2.1 C5C2P2_9MICO Binding-protein-dependent transport system... 155 8e-37 B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport system... 154 2e-36 >B3K641.1 B3K641_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 229 bits (583), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 111/146 (76%), Positives = 126/146 (86%) Query: 1 MRAKAWVEKXXXXXXXXXXXXFSLLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSE 60 M+AKAW EK FSLLPL+WLIRSSLM+MGQIFELPP+WIP P + N+SE Sbjct: 1 MKAKAWFEKGLIYLVLAAGGIFSLLPLVWLIRSSLMNMGQIFELPPVWIPRPVQLSNYSE 60 Query: 61 ALTILPFGRYFINTTVIVIFTMLGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYA 120 ALTILPFG+YF+NT +IV+F++LGV+VT SISAYSFARM WRGRN+VFGLLLSSMMLPYA Sbjct: 61 ALTILPFGQYFMNTAIIVVFSVLGVIVTSSISAYSFARMKWRGRNMVFGLLLSSMMLPYA 120 Query: 121 VTLIPTFIGWSKLGLTNSFIPLIAPA 146 VTLIPTFIGWSK+GLTNSFIPLIAPA Sbjct: 121 VTLIPTFIGWSKVGLTNSFIPLIAPA 146 >C5C4A9.1 C5C4A9_9MICO Binding-protein-dependent transport systems inner membrane component Length = 300 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 73/124 (58%), Positives = 99/124 (79%) Query: 23 SLLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTM 82 +LLPLIWL+RS+LM GQIF PP WIPDP + NF+ ALT +PFGRYF+NT +I + + Sbjct: 46 TLLPLIWLVRSALMTSGQIFISPPEWIPDPVAWDNFAGALTAVPFGRYFVNTMIIEVGVL 105 Query: 83 LGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPL 142 +G L++CS +A+SFAR+ WR +N+VFGLL++ +MLPYAVTLIPTF+ W +G N+++PL Sbjct: 106 VGTLLSCSFAAFSFARLRWRFKNVVFGLLMTGVMLPYAVTLIPTFLFWQAVGAVNTYVPL 165 Query: 143 IAPA 146 I PA Sbjct: 166 ILPA 169 >B1D781.1 B1D781_9BACL Binding-protein-dependent transport systems inner membrane component Length = 276 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 70/123 (56%), Positives = 98/123 (79%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTML 83 ++P +WL+RSS+MD+ QIF +PP WIP PF F NF EALT++PFG +F NT +IV +L Sbjct: 23 IVPFLWLLRSSVMDLSQIFIMPPQWIPKPFHFENFKEALTVVPFGTFFKNTLIIVAGVLL 82 Query: 84 GVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPLI 143 G +V+ +I+A+ F+R+ W+GR++VF +L+SSMMLP AVTLIP+FIGW +LG ++F PLI Sbjct: 83 GTVVSSTIAAFGFSRIKWKGRDMVFAILMSSMMLPGAVTLIPSFIGWKELGFYDTFYPLI 142 Query: 144 APA 146 PA Sbjct: 143 VPA 145 >C5C2P2.1 C5C2P2_9MICO Binding-protein-dependent transport systems inner membrane component Length = 305 Score = 155 bits (393), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 67/129 (51%), Positives = 98/129 (75%) Query: 23 SLLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTM 82 S++PL+WL+RS+ MD GQIF +PP W+PDP + NFS AL FGRYF+NT ++V+ + Sbjct: 50 SVVPLLWLLRSAFMDQGQIFRIPPQWLPDPVVWDNFSRALAAESFGRYFLNTLLLVVLIV 109 Query: 83 LGVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPL 142 G +++CS +A+SF+R+ WRGR + FGL+++ +MLPYAVTLIPTF+ W +LG +++PL Sbjct: 110 PGTVLSCSFAAFSFSRLEWRGRGVAFGLIMTGLMLPYAVTLIPTFVAWQRLGWVGTYVPL 169 Query: 143 IAPACSAAA 151 + PA AA Sbjct: 170 VVPAWFAAG 178 >B1DGI0.1 B1DGI0_9BACL Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 154 bits (389), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 74/123 (60%), Positives = 94/123 (76%) Query: 24 LLPLIWLIRSSLMDMGQIFELPPIWIPDPFRFGNFSEALTILPFGRYFINTTVIVIFTML 83 L P WL+RSS MD IF +PPIWIP + N+ EA+TILPF RYF+NT +IV+ + Sbjct: 24 LFPFYWLLRSSFMDQSDIFVIPPIWIPHDWLISNYREAMTILPFNRYFLNTFIIVVLEVS 83 Query: 84 GVLVTCSISAYSFARMSWRGRNLVFGLLLSSMMLPYAVTLIPTFIGWSKLGLTNSFIPLI 143 GV+++ SI AYSFAR+ W GRNLVF ++L+SMMLP AVTLIP ++GW+KLG TN+FIPL Sbjct: 84 GVVLSSSICAYSFARLRWPGRNLVFMVILTSMMLPGAVTLIPQYVGWAKLGATNTFIPLT 143 Query: 144 APA 146 PA Sbjct: 144 LPA 146 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.143 0.463 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 818,148,550 Number of extensions: 29238479 Number of successful extensions: 101444 Number of sequences better than 1.0e-05: 2245 Number of HSP's gapped: 101159 Number of HSP's successfully gapped: 2245 Length of query: 151 Length of database: 3,060,696,203 Length adjustment: 113 Effective length of query: 38 Effective length of database: 1,996,121,508 Effective search space: 75852617304 Effective search space used: 75852617304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 125 (52.8 bits)