BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0271.0021.p
         (67 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZE72.1 C0ZE72_BREBN Thiazole biosynthesis protein ThiS               72   2e-11
Q81UX5.1 Q81UX5_BACAN Putative uncharacterized protein                 72   2e-11
Q73DB2.1 Q73DB2_BACC1 Putative uncharacterized protein                 72   2e-11
Q63FR6.1 Q63FR6_BACCZ Thiamine biosynthesis protein                    72   2e-11
C3P0L3.1 C3P0L3_BACAA Thiamine biosynthesis protein ThiS               72   2e-11

>C0ZE72.1 C0ZE72_BREBN Thiazole biosynthesis protein ThiS
          Length = 67

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/67 (49%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          M + +NGK +E+AE+  TV  LL+      ++V+VERNGEI++R  Y  T  ++GDR+E+
Sbjct: 1  MIVQLNGKKVELAEEITTVRALLASYSLQEKIVVVERNGEIIDRSAYEQTPIADGDRIEI 60

Query: 61 VHFVGGG 67
          VHFVGGG
Sbjct: 61 VHFVGGG 67


>Q81UX5.1 Q81UX5_BACAN Putative uncharacterized protein
          Length = 67

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+ E  +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPESVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


>Q73DB2.1 Q73DB2_BACC1 Putative uncharacterized protein
          Length = 67

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+ E  +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPESVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


>Q63FR6.1 Q63FR6_BACCZ Thiamine biosynthesis protein
          Length = 67

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+ E  +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPESVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


>C3P0L3.1 C3P0L3_BACAA Thiamine biosynthesis protein ThiS
          Length = 67

 Score = 71.6 bits (174), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query: 1  MNLIINGKALEIAEDCRTVADLLSRPEWSGRLVIVERNGEIVNREHYAGTSFSEGDRLEL 60
          MNL ING  +E+ E  +TVA+LL+  E   R+V+VERN +I+ ++ +  TS  +GD++E+
Sbjct: 1  MNLKINGNQIEVPESVKTVAELLTHLELDNRIVVVERNKDILQKDDHTDTSVFDGDQIEI 60

Query: 61 VHFVGGG 67
          V FVGGG
Sbjct: 61 VTFVGGG 67


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.140    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 405,332,391
Number of extensions: 12922348
Number of successful extensions: 30427
Number of sequences better than 1.0e-05: 143
Number of HSP's gapped: 30486
Number of HSP's successfully gapped: 143
Length of query: 67
Length of database: 3,060,696,203
Length adjustment: 39
Effective length of query: 28
Effective length of database: 2,693,276,618
Effective search space: 75411745304
Effective search space used: 75411745304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)