BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0018.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D732.1 B1D732_9BACL Metal dependent phosphohydrolase EC=3.1.3.5 259 1e-67 A6CIT0.1 A6CIT0_9BACI Putative uncharacterized protein 209 2e-52 A6B2Z4.1 A6B2Z4_VIBPA 5'-nucleotidase YfbR EC=3.1.3.5 186 1e-45 Q87R72.2 Y926_VIBPA UPF0207 protein VP0926 186 1e-45 A7K661.1 A7K661_9VIBR HD domain protein 185 3e-45 >B1D732.1 B1D732_9BACL Metal dependent phosphohydrolase EC=3.1.3.5 Length = 198 Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 124/195 (63%), Positives = 151/195 (77%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF AY+YRL+YI+RWSLMR+T E VA+HSF VALL+HMLC IGN F RS NADRA + Sbjct: 4 HFFAYMYRLKYIERWSLMRNTTKETVAEHSFHVALLAHMLCEIGNSFFDRSYNADRAVTL 63 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 ALFHDATEVFTGDI TPVKH+NP++L+SFR++E +AAERL+GM+P L + YAPLL Sbjct: 64 ALFHDATEVFTGDIPTPVKHHNPKMLASFREIEAMAAERLLGMVPEPLQASYAPLLGKPG 123 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 S E+ L + VKAAD LDAYLKC+ EV+ GNREF AK QT A ++ L +PE E+FL Sbjct: 124 STLSEEEQVLHKIVKAADLLDAYLKCLTEVSTGNREFLVAKGQTEAAMKQLGLPETEWFL 183 Query: 191 AHMAPGFELSLDELS 205 AHMAP ++LDELS Sbjct: 184 AHMAPSLGMTLDELS 198 >A6CIT0.1 A6CIT0_9BACI Putative uncharacterized protein Length = 173 Score = 209 bits (531), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 96/178 (53%), Positives = 124/178 (69%), Gaps = 6/178 (3%) Query: 28 MRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAMALFHDATEVFTGDIATP 87 MR+ ENVA+HSF V+LL+H LC+I N F + +N ++A +LFHD TEVFTGDI TP Sbjct: 1 MRNVMKENVAEHSFHVSLLTHSLCTIANEVFHKKVNTEKAVTQSLFHDVTEVFTGDIPTP 60 Query: 88 VKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQDSPSGSEDARLLRYVKAA 147 VKH+N +L +FRD+E +AAE+L P +L Y ++ Q D L +Y+KAA Sbjct: 61 VKHHNRDILKNFRDIEELAAEKLTNQAPAQLKEAYKSVISDQS------DKELTQYIKAA 114 Query: 148 DHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFLAHMAPGFELSLDELS 205 D LDAYLKCV E++AGNREF AK Q K++GLEMPE+EYFL H AP FE +LDE+S Sbjct: 115 DLLDAYLKCVSELSAGNREFVVAKKQIEEKIKGLEMPEVEYFLEHFAPSFEKTLDEIS 172 >A6B2Z4.1 A6B2Z4_VIBPA 5'-nucleotidase YfbR EC=3.1.3.5 Length = 206 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L R++ IQRW LMRS +PENV++HS QVA ++H L I N F +LN +R A + Sbjct: 17 HFFAHLARMKLIQRWPLMRSVSPENVSEHSLQVAFVAHALALIKNKKFGGTLNPERIALL 76 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HD++EV TGD+ TPVK+ NP + ++ +E A +L+ M+P E +AP L Sbjct: 77 AMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEHKLLSMLPEEFQEDFAPFLLSHS 136 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 S ED+++ VK AD + AYLKC+ E++AGN EFA AK + L+ + PEMEYFL Sbjct: 137 --SHEEDSQI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDVTLQERKTPEMEYFL 191 Query: 191 AHMAPGFELSLDELS 205 AP FELSLDE+S Sbjct: 192 NTFAPSFELSLDEIS 206 >Q87R72.2 Y926_VIBPA UPF0207 protein VP0926 Length = 194 Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 93/195 (47%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L R++ IQRW LMRS +PENV++HS QVA ++H L I N F +LN +R A + Sbjct: 5 HFFAHLARMKLIQRWPLMRSVSPENVSEHSLQVAFVAHALALIKNKKFGGTLNPERIALL 64 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HD++EV TGD+ TPVK+ NP + ++ +E A +L+ M+P E +AP L Sbjct: 65 AMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIEAAAEHKLLSMLPEEFQEDFAPFLLSHS 124 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 S ED+++ VK AD + AYLKC+ E++AGN EFA AK + L+ + PEMEYFL Sbjct: 125 --SHEEDSQI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDVTLQERKTPEMEYFL 179 Query: 191 AHMAPGFELSLDELS 205 AP FELSLDE+S Sbjct: 180 NTFAPSFELSLDEIS 194 >A7K661.1 A7K661_9VIBR HD domain protein Length = 206 Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 92/195 (47%), Positives = 129/195 (66%), Gaps = 5/195 (2%) Query: 11 HFSAYLYRLQYIQRWSLMRSTAPENVAQHSFQVALLSHMLCSIGNVHFARSLNADRAAAM 70 HF A+L R++ IQRW LMRS +PENV++HS QVA ++H L I N F +LN +R A + Sbjct: 17 HFFAHLARMKLIQRWPLMRSVSPENVSEHSLQVAFVAHALALIKNKKFGGNLNPERIAIL 76 Query: 71 ALFHDATEVFTGDIATPVKHNNPRLLSSFRDMERIAAERLIGMIPPELSSVYAPLLQPQD 130 A++HD++EV TGD+ TPVK+ NP + ++ +E A ++L+ M+P E +AP L Sbjct: 77 AMYHDSSEVLTGDLPTPVKYYNPEIAKEYKKIESAAEQKLLSMLPEEFQDEFAPYLLSHS 136 Query: 131 SPSGSEDARLLRYVKAADHLDAYLKCVWEVAAGNREFAAAKVQTAAKLRGLEMPEMEYFL 190 + EDA++ VK AD + AYLKC+ E++AGN EFA AK + L+ PEM+YFL Sbjct: 137 --AHEEDAKI---VKQADSICAYLKCLEELSAGNHEFALAKKRLDITLQERRTPEMDYFL 191 Query: 191 AHMAPGFELSLDELS 205 AP FELSLDE+S Sbjct: 192 NTFAPSFELSLDEIS 206 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,287,914,260 Number of extensions: 49162246 Number of successful extensions: 120563 Number of sequences better than 1.0e-05: 322 Number of HSP's gapped: 120393 Number of HSP's successfully gapped: 324 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)