BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0002.p (187 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KBR5.1 B3KBR5_9BACI Lytic transglycosylase catalytic 258 2e-67 B1D6Z9.1 B1D6Z9_9BACL Lytic transglycosylase catalytic 216 6e-55 C0Z7Z2.1 C0Z7Z2_BREBN Putative uncharacterized protein 170 5e-41 B7B0P5.1 B7B0P5_9FIRM Putative uncharacterized protein 144 3e-33 C1PRD3.1 C1PRD3_ALIAC Soluble lytic murein transglycosylase-like... 140 5e-32 >B3KBR5.1 B3KBR5_9BACI Lytic transglycosylase catalytic Length = 188 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 118/184 (64%), Positives = 147/184 (79%) Query: 1 MKWXXXXXXXXXXFIGFTAILFLSTNWMSWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRV 60 MKW F+ F A+LFLS+NWM+ YPI+YK+EIR H+ YE+DPFLVA+IIRV Sbjct: 1 MKWLRKKRVLLLLFVSFVALLFLSSNWMTLLYPIHYKDEIRKHAAYYEVDPFLVASIIRV 60 Query: 61 ETNFKTGRESKKGAIGLMQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSSL 120 ETNFK G+ESKKGA+G+MQLMPDTA WA+E AKLP V+L +K E ANI+LGTWY+ +L Sbjct: 61 ETNFKPGKESKKGALGIMQLMPDTANWAMEMAKLPSVNLLSVKNEVDANIQLGTWYIQNL 120 Query: 121 SRKFEGNRIAVIAAYNAGPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQY 180 ++ +GN IA IAAYNAGPG V+ W+++G WDGT VK+IPIGETRHYVQRVIYYY+QY Sbjct: 121 HKEMDGNPIAAIAAYNAGPGNVKNWINKGMWDGTYENVKSIPIGETRHYVQRVIYYYNQY 180 Query: 181 TEIY 184 T++Y Sbjct: 181 TDVY 184 >B1D6Z9.1 B1D6Z9_9BACL Lytic transglycosylase catalytic Length = 188 Score = 216 bits (551), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 98/185 (52%), Positives = 131/185 (70%), Gaps = 1/185 (0%) Query: 1 MKWXXXXXXXXXXFIGFTAILFLSTNWMS-WFYPIYYKNEIRTHSNTYEIDPFLVAAIIR 59 MKW IGF +LFL++NW++ YPI YK +IR ++ Y +DP L+AAIIR Sbjct: 1 MKWLVRKRVLLILLIGFIGVLFLNSNWLARMMYPIQYKEDIRASASNYGVDPHLIAAIIR 60 Query: 60 VETNFKTGRESKKGAIGLMQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSS 119 ETN+ TG+ SKKGA+GLMQ+MPDTA W +++A +V+ + L+ P +IE+G WYL S Sbjct: 61 TETNYSTGQVSKKGALGLMQIMPDTADWIVKQADFNNVTRDMLQNRPDVSIEVGAWYLQS 120 Query: 120 LSRKFEGNRIAVIAAYNAGPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQ 179 L ++F+ N +AVIAAYNAGPG V++WLD G WDG IP GETRHYVQRVIYYY++ Sbjct: 121 LHKQFKQNTVAVIAAYNAGPGNVKKWLDTGKWDGKLDTTDQIPYGETRHYVQRVIYYYNK 180 Query: 180 YTEIY 184 Y ++Y Sbjct: 181 YKDLY 185 >C0Z7Z2.1 C0Z7Z2_BREBN Putative uncharacterized protein Length = 187 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 109/156 (69%), Gaps = 1/156 (0%) Query: 30 WFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIGLMQLMPDTAKWAL 89 W YPI Y+ +I T + Y++DP LV AIIR E+ F T R SKKGA+GLMQLMP+TA+W + Sbjct: 29 WMYPIKYEQQIVTAALKYKVDPHLVLAIIRSESGFATDRVSKKGAVGLMQLMPETAQWIV 88 Query: 90 EKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAVIAAYNAGPGKVQRWLDEG 149 +A + L + P NIE+GTWYL L +++G+ + VIAAYNAGPGKV WL Sbjct: 89 NEAGFRPKDSQYLYD-PVMNIEIGTWYLDFLLSRYDGDIVKVIAAYNAGPGKVNGWLASE 147 Query: 150 DWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 W+GT V++IP GETR YVQRV+YY+D+Y IY+ Sbjct: 148 QWNGTRDTVEDIPYGETRQYVQRVLYYHDRYKNIYD 183 >B7B0P5.1 B7B0P5_9FIRM Putative uncharacterized protein Length = 214 Score = 144 bits (364), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 104/175 (59%), Gaps = 3/175 (1%) Query: 14 FIGFTAILFLSTNWMS--WFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESK 71 F+ F L ++ + YP Y++ + T+S+ Y +DP+L A+I+ E+ F+ G S Sbjct: 31 FLAFAIYLTFASEAFQRHYLYPFPYRDTVETYSDRYRVDPYLAIAVIKTESKFQDGVHSH 90 Query: 72 KGAIGLMQLMPDTAKWALEKAKLPDVSLERLKEEPSANIELGTWYLSSLSRKFEGNRIAV 131 +GAIGLMQLMPDTA+W + + P S+E + EP NI G WYLS+L +F+GN + Sbjct: 91 RGAIGLMQLMPDTAEWIAGQLEDPSYSIEAI-HEPERNIRYGIWYLSTLQHEFDGNDVLA 149 Query: 132 IAAYNAGPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYNE 186 +AAYNAG G VQ W+ E W + IP ETR YV++V+ +Y +Y E Sbjct: 150 LAAYNAGRGNVQSWIREYGWPADFHDIDAIPYKETREYVRKVLLTEHKYRSLYPE 204 >C1PRD3.1 C1PRD3_ALIAC Soluble lytic murein transglycosylase-like protein Length = 219 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 11/179 (6%) Query: 18 TAILFLSTNWM-SWFYPIYYKNEIRTHSNTYEIDPFLVAAIIRVETNFKTGRESKKGAIG 76 ++ +STN YPI Y+ +I+ + ++DP L+A+IIRVE+ F+T S GA+G Sbjct: 30 AVLVTISTNGFWRLMYPIQYQAQIQQSARFADVDPLLIASIIRVESKFRTEDVSHAGAVG 89 Query: 77 LMQLMPDTAKWALE----KAKLPDVSLERLKEE------PSANIELGTWYLSSLSRKFEG 126 LMQLMP TA+W E + +L +L ++ P NI +G+WY+ SL F G Sbjct: 90 LMQLMPQTAEWIAEMLRNQTSGSGGALRKLPKDAKKLASPEYNILIGSWYVKSLIDDFHG 149 Query: 127 NRIAVIAAYNAGPGKVQRWLDEGDWDGTEAAVKNIPIGETRHYVQRVIYYYDQYTEIYN 185 N +A +AAYNAGP +V +WL +G W+G + IP+GETRH+V RV Y YD Y +IY Sbjct: 150 NVVAAVAAYNAGPRRVSQWLKDGVWNGKLQDIDQIPVGETRHFVDRVFYNYDLYKKIYG 208 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,137,813,945 Number of extensions: 45518002 Number of successful extensions: 114487 Number of sequences better than 1.0e-05: 1644 Number of HSP's gapped: 112575 Number of HSP's successfully gapped: 1644 Length of query: 187 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 59 Effective length of database: 1,854,806,283 Effective search space: 109433570697 Effective search space used: 109433570697 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)