BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0271.0001.p (170 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6Z7.1 B1D6Z7_9BACL ATP-cone domain protein 247 3e-64 B3KBR7.1 B3KBR7_9BACI ATP-cone domain protein 221 2e-56 C0Z7Z5.1 NRDR_BREBN Transcriptional repressor nrdR 203 5e-51 Q9K861.1 NRDR_BACHD Transcriptional repressor nrdR 199 7e-50 B7GGU9.1 NRDR_ANOFW Transcriptional repressor nrdR 198 1e-49 >B1D6Z7.1 B1D6Z7_9BACL ATP-cone domain protein Length = 155 Score = 247 bits (631), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 125/150 (83%), Positives = 128/150 (85%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 MKCPYCD TKVLDSRPANENKSI FTTFEMIEETPLIVIKK GSREE Sbjct: 1 MKCPYCDFAGTKVLDSRPANENKSIRRRRECEKCSRRFTTFEMIEETPLIVIKKDGSREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEK LR ALAEVESR+IGE+VM QLYPVD Sbjct: 61 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKELRTTALAEVESREIGEIVMSQLYPVD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSK 162 EVAYVRFASVYRQFKDI+MFMKEL LLSK Sbjct: 121 EVAYVRFASVYRQFKDIDMFMKELNSLLSK 150 >B3KBR7.1 B3KBR7_9BACI ATP-cone domain protein Length = 145 Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 109/141 (77%), Positives = 122/141 (86%) Query: 25 VLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREEFSRDKILRGLIR 84 +LDSRPANENKSI FTTFEM+EETPLIV+KK GSREEFSR+K+LRGLIR Sbjct: 1 MLDSRPANENKSIRRRRECEQCSKRFTTFEMVEETPLIVVKKDGSREEFSREKVLRGLIR 60 Query: 85 ACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVDEVAYVRFASVYR 144 ACEKRPVSV++L++IVS+VEK+LR A AEVESRQIGEL+ME+LYPVDEVAYVRFASVYR Sbjct: 61 ACEKRPVSVDQLDMIVSDVEKALRNTAAAEVESRQIGELLMERLYPVDEVAYVRFASVYR 120 Query: 145 QFKDINMFMKELKGLLSKGTG 165 QFKDINMFMKELK LLSK T Sbjct: 121 QFKDINMFMKELKSLLSKDTD 141 >C0Z7Z5.1 NRDR_BREBN Transcriptional repressor nrdR Length = 159 Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 96/151 (63%), Positives = 119/151 (78%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP+C++ T+VLDSRP N NKSI FTTFEM+EETPL+++KK G+REE Sbjct: 1 MRCPFCEYNGTRVLDSRPFNHNKSIRRRRECEACERRFTTFEMVEETPLLIVKKDGTREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FSRDKILRGL+RACEKRPV +E LE +V+++EK LR AE+ S +GE VME+LY VD Sbjct: 61 FSRDKILRGLVRACEKRPVPLEVLENVVNDIEKELRSCGQAEIPSNDVGEKVMERLYHVD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSKG 163 EVAYVRFASVYRQFKDIN+FMKEL+ LL++ Sbjct: 121 EVAYVRFASVYRQFKDINVFMKELEELLAQA 151 >Q9K861.1 NRDR_BACHD Transcriptional repressor nrdR Length = 153 Score = 199 bits (506), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 98/150 (65%), Positives = 118/150 (78%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 M+CP C H T+VLDSRPA+E +SI FTTFEMIEE PLIV+KK G+R+E Sbjct: 1 MRCPACHHNGTRVLDSRPAHEGRSIRRRRECESCNHRFTTFEMIEEVPLIVVKKDGTRQE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FS DKILRGLIRACEKRPV +E LE IV+EVE+ LRG EV+S++IGELVME+L VD Sbjct: 61 FSSDKILRGLIRACEKRPVPLETLEGIVNEVERELRGQGKNEVDSKEIGELVMERLANVD 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSK 162 +VAYVRFASVYRQFKDIN+F++ELK L+ + Sbjct: 121 DVAYVRFASVYRQFKDINVFIQELKELMER 150 >B7GGU9.1 NRDR_ANOFW Transcriptional repressor nrdR Length = 156 Score = 198 bits (504), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 95/154 (61%), Positives = 119/154 (77%) Query: 13 MKCPYCDHTNTKVLDSRPANENKSIXXXXXXXXXXXXFTTFEMIEETPLIVIKKGGSREE 72 MKCP C H T+VLDSRPA+E +SI FTTFE +EETPLIV+KK G+REE Sbjct: 1 MKCPSCHHNGTRVLDSRPADEGRSIRRRRECERCHFRFTTFERVEETPLIVVKKEGTREE 60 Query: 73 FSRDKILRGLIRACEKRPVSVERLEVIVSEVEKSLRGIALAEVESRQIGELVMEQLYPVD 132 FSR+KILRGLI+ACEKRPV++E+LE + ++E+ LR + EV+S IGE+VMEQL +D Sbjct: 61 FSREKILRGLIKACEKRPVALEQLEEVTQQIERELRNSGINEVKSETIGEMVMEQLSKID 120 Query: 133 EVAYVRFASVYRQFKDINMFMKELKGLLSKGTGE 166 EVAYVRFASVYRQFKD+N+F++ELK L+ K GE Sbjct: 121 EVAYVRFASVYRQFKDLNVFIEELKELIKKEQGE 154 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 817,812,282 Number of extensions: 26101771 Number of successful extensions: 70983 Number of sequences better than 1.0e-05: 1211 Number of HSP's gapped: 70770 Number of HSP's successfully gapped: 1211 Length of query: 170 Length of database: 3,060,696,203 Length adjustment: 126 Effective length of query: 44 Effective length of database: 1,873,648,313 Effective search space: 82440525772 Effective search space used: 82440525772 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)