BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0010.p (297 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z975.1 C0Z975_BREBN Transcriptional regulator 483 e-135 B3KHR7.1 B3KHR7_9BACI LysR substrate-binding 473 e-131 B1DG44.1 B1DG44_9BACL Transcriptional regulator, LysR family 461 e-128 B1DI62.1 B1DI62_9BACL Transcriptional regulator, LysR family 443 e-123 A9VR62.1 A9VR62_BACWK Transcriptional regulator, LysR family 269 3e-70 >C0Z975.1 C0Z975_BREBN Transcriptional regulator Length = 295 Score = 483 bits (1243), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/287 (81%), Positives = 259/287 (90%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +ELLQLQYFL VAR+EHVTEAARSLHVTQSSLSKTI RLEEDLGVPLFDR GRKLRLNE+ Sbjct: 1 MELLQLQYFLTVARMEHVTEAARSLHVTQSSLSKTIQRLEEDLGVPLFDRTGRKLRLNEF 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASALPHILREFRKKRPHVQFH 126 G+KFL R ERALFELEQGK ELRDLS+PE GTLELAVT AS LP+ILREFRKKRP +QFH Sbjct: 61 GSKFLCRVERALFELEQGKLELRDLSNPEHGTLELAVTTASTLPNILREFRKKRPDIQFH 120 Query: 127 VQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTSVSL 186 VQML TQEMV LLH+G+VD CLSSP ++++DIEC++V+ DPILVAVP+GHRLA+R+ VSL Sbjct: 121 VQMLTTQEMVTLLHRGEVDFCLSSPPIQDDDIECEIVFIDPILVAVPRGHRLADRSIVSL 180 Query: 187 TELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAFIPST 246 TELKDESF+GVK+GYGTRD D ICKSVGF P YVYEGDEPARL LVEAEIGIAFIPST Sbjct: 181 TELKDESFVGVKKGYGTRDFVDAICKSVGFVPTYVYEGDEPARLIQLVEAEIGIAFIPST 240 Query: 247 ARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYF 293 AR+SR+QI YL+VENHELVREIALLW+K RYIS+ A EFREVV DYF Sbjct: 241 ARDSREQITYLRVENHELVREIALLWNKSRYISRAAQEFREVVVDYF 287 >B3KHR7.1 B3KHR7_9BACI LysR substrate-binding Length = 295 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 227/291 (78%), Positives = 256/291 (87%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +ELLQL+YFL VARLEH+TEAARSLHVTQSSLSKTIGRLEEDLGVPLFDR+GRKLRLNE+ Sbjct: 1 MELLQLKYFLEVARLEHMTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRIGRKLRLNEF 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASALPHILREFRKKRPHVQFH 126 G++F RAERALFELEQGKQE+ D+SS E GTLELAVT AS LP ILREFR KRP +QFH Sbjct: 61 GSRFYRRAERALFELEQGKQEISDVSSQEHGTLELAVTTASTLPQILREFRNKRPDIQFH 120 Query: 127 VQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTSVSL 186 VQML TQEMV LLH+G+VD CLSSP ++ EDIECQ+++ DPILVAV GHRLA R S+SL Sbjct: 121 VQMLTTQEMVTLLHRGEVDFCLSSPPIKGEDIECQIMFIDPILVAVTTGHRLANRNSISL 180 Query: 187 TELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAFIPST 246 TEL+DE F+GVKRGYGTRDL D ICKSVGF P YVYEGDEPARLS+LVEA IGIAFIPST Sbjct: 181 TELRDECFVGVKRGYGTRDLVDSICKSVGFVPTYVYEGDEPARLSSLVEAGIGIAFIPST 240 Query: 247 ARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYFKPLT 297 AR S + I+YL+VENHELVREIALLWH+ RYIS+ ALEFREVV +YF ++ Sbjct: 241 ARYSGEHIKYLKVENHELVREIALLWHRSRYISRAALEFREVVVEYFGTIS 291 >B1DG44.1 B1DG44_9BACL Transcriptional regulator, LysR family Length = 299 Score = 461 bits (1185), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/291 (75%), Positives = 254/291 (87%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +ELLQLQYFL VARLEHVTEAAR LHVTQSSLSKTI RLEEDLGV LFDRVGRKLRLNE Sbjct: 5 MELLQLQYFLTVARLEHVTEAARHLHVTQSSLSKTIQRLEEDLGVLLFDRVGRKLRLNES 64 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASALPHILREFRKKRPHVQFH 126 G++FL RAERALFEL+QGKQEL D SSPEQGT+ELAV AS LP+ILREFRKK+P++QFH Sbjct: 65 GSRFLLRAERALFELDQGKQELNDWSSPEQGTIELAVNTASMLPNILREFRKKKPNIQFH 124 Query: 127 VQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTSVSL 186 VQML TQEMV LH+GD+D CLSSP +E EDIECQ++Y D IL+AVP+ HRLA R+SVSL Sbjct: 125 VQMLTTQEMVAHLHRGDIDFCLSSPPLEGEDIECQIMYRDAILLAVPESHRLAGRSSVSL 184 Query: 187 TELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAFIPST 246 ELK+E F+GVK+GYGTRDL D ICK GFEPK+VYEGDEPAR++ALVEAEIGIAFIP T Sbjct: 185 PELKEEWFVGVKKGYGTRDLVDSICKKAGFEPKFVYEGDEPARINALVEAEIGIAFIPGT 244 Query: 247 ARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYFKPLT 297 ARNS QI YL+++N+ELVREIALLWHK RY+S+ A FR+VV +YF+ L+ Sbjct: 245 ARNSNGQIAYLEIDNNELVREIALLWHKSRYVSRAAQSFRKVVVNYFETLS 295 >B1DI62.1 B1DI62_9BACL Transcriptional regulator, LysR family Length = 295 Score = 443 bits (1140), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/291 (73%), Positives = 250/291 (85%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +ELLQLQYFL VA EHVTEAARSLHVTQSSLS+TI RLEEDLGV LFDR+GRKL+LNE Sbjct: 1 MELLQLQYFLAVAHSEHVTEAARSLHVTQSSLSRTIHRLEEDLGVSLFDRIGRKLQLNES 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASALPHILREFRKKRPHVQFH 126 G +FL R ERALFELEQGK EL +L+SP+ GTLEL VT+AS L HILR+F+ KRP++QFH Sbjct: 61 GRRFLRRVERALFELEQGKLELSELASPDHGTLELGVTSASVLHHILRKFQIKRPNIQFH 120 Query: 127 VQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTSVSL 186 VQML TQEM+ LL +G++D CLSSP VE +DIECQ+V+ DPILVAVP GHRLA+R+SVSL Sbjct: 121 VQMLTTQEMIMLLERGELDYCLSSPPVERDDIECQIVFIDPILVAVPVGHRLADRSSVSL 180 Query: 187 TELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAFIPST 246 +EL+DE F+GVK GYGTRD+ + CKS GF P+YVYEGDEPARL LVE+EIGIAFIPST Sbjct: 181 SELRDERFVGVKVGYGTRDIMEAACKSAGFIPRYVYEGDEPARLVNLVESEIGIAFIPST 240 Query: 247 ARNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYFKPLT 297 ARN R QI+YLQVE HE+VREIALLWHK RYI+ ALEFREVV +YF+ L+ Sbjct: 241 ARNDRAQIKYLQVETHEVVREIALLWHKSRYITPAALEFREVVLEYFEALS 291 >A9VR62.1 A9VR62_BACWK Transcriptional regulator, LysR family Length = 294 Score = 269 bits (687), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 135/289 (46%), Positives = 188/289 (65%), Gaps = 2/289 (0%) Query: 7 LELLQLQYFLVVARLEHVTEAARSLHVTQSSLSKTIGRLEEDLGVPLFDRVGRKLRLNEY 66 +ELLQL+YF VARLEH+T+AA LH+ Q SLSKTI RLE+DLGVPLFDR GR++ LN + Sbjct: 1 MELLQLKYFQTVARLEHMTKAAEELHIAQPSLSKTIARLEKDLGVPLFDRQGRQITLNSF 60 Query: 67 GNKFLHRAERALFELEQGKQELRDLSSPEQGTLELAVTAASALPHILREFRKKRPHVQFH 126 G FL R ER EL +G++E++DL+ +QG++ LAV+ LP +L F + P+V+F Sbjct: 61 GKVFLKRVERIFHELSEGEREIKDLAELQQGSITLAVSIPRILPELLGSFLLEHPNVRFQ 120 Query: 127 VQMLATQEMVKLLHQGDVDVCLSSPAVEEEDIECQVVYNDPILVAVPKGHRLAERTSVSL 186 + +T M + L ++D C+SS +E E++ + + + I +AVP GHRL+ R S+ L Sbjct: 121 QFLASTPSMKRQLDNMEIDFCISSIPIEGEEMVWEPLITEEIFLAVPSGHRLSNRESIYL 180 Query: 187 TELKDESFIGVKRGYGTRDLADRICKSVGFEPKYVYEGDEPARLSALVEAEIGIAFIPST 246 E+KDESFI + GYG R L D+ CK GF P +E DEP +S L++ +GIAF+PS Sbjct: 181 HEVKDESFISMNTGYGFRHLTDQFCKKAGFTPHIAFEVDEPTVISDLIKQGLGIAFVPSL 240 Query: 247 A--RNSRDQIQYLQVENHELVREIALLWHKRRYISQTALEFREVVADYF 293 +NS L++ R I L W K+RY+S TA +FRE V DYF Sbjct: 241 TLLKNSTLASNKLRIIEPNCERTIGLSWSKKRYLSNTAQQFREFVIDYF 289 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,647,296,495 Number of extensions: 64922353 Number of successful extensions: 209784 Number of sequences better than 1.0e-05: 16581 Number of HSP's gapped: 199242 Number of HSP's successfully gapped: 16583 Length of query: 297 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 162 Effective length of database: 1,788,859,178 Effective search space: 289795186836 Effective search space used: 289795186836 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)