BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0009.p (459 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DG43.1 B1DG43_9BACL Major facilitator superfamily MFS_1 655 0.0 C0Z976.1 C0Z976_BREBN Conserved hypothetical membrane protein 652 0.0 B7DMP9.1 B7DMP9_9BACL Major facilitator superfamily MFS_1 352 4e-95 C1PQA6.1 C1PQA6_ALIAC Arabinose efflux permease family protein 347 1e-93 B3KHR6.1 B3KHR6_9BACI Major facilitator superfamily MFS_1 319 4e-85 >B1DG43.1 B1DG43_9BACL Major facilitator superfamily MFS_1 Length = 463 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/459 (70%), Positives = 378/459 (82%) Query: 1 MNARSRWLLISVGLGVLLNPLNSSMISVAIARLQNVYRLDFTEVSWIIFSFYIASAVAQP 60 MN R+RWL+I+VGLG+LLNPLNSSMISVA+ARLQ Y+LDFT VSWIIFSFYIASAVAQP Sbjct: 1 MNTRNRWLMIAVGLGILLNPLNSSMISVAMARLQTEYKLDFTGVSWIIFSFYIASAVAQP 60 Query: 61 IMGKASDLFGRRKIFLAGLVVAFVASLAAPLAPGFGWLIVFRIVQSIGTSMMVSVGMAIV 120 +MG+ASDLFGRR IFL GLV+AF+ASL APL+P FGWLIVFRI+QSIGTSMMV+VGMAIV Sbjct: 61 VMGRASDLFGRRNIFLYGLVIAFLASLLAPLSPSFGWLIVFRIIQSIGTSMMVAVGMAIV 120 Query: 121 RVHITEKQASALSVMSIFLSGAAAIGPFIGGVVIHWWDWHGIFFVNIPFAAASFLLAWRA 180 R++IT+KQA+ALSV+SIFLSGAAAIGPF+GGV+IHWWDW IFFVNIPFA AS+LLAWR Sbjct: 121 RIYITDKQAAALSVLSIFLSGAAAIGPFVGGVLIHWWDWPAIFFVNIPFAIASYLLAWRT 180 Query: 181 IPKDEPPVAALRNMSFRQWITMIDAPGIXXXXXXXXXXXXXXXXXXXXXHISFGHVLTGG 240 IPKD+P + +R ++ R+W+ +IDA GI H+SF +V+ G Sbjct: 181 IPKDKPETSPVRGLTIRKWLDLIDASGILLFTAGLVALLVGLLSAKSSGHVSFSYVVIGL 240 Query: 241 IGLIALVAFVRHELKASSPFIPVRTFAKYPEMARVNVEFILVNVLYYSLFFGLPSYLQIV 300 IGL++L AFVRHELKA SPFIP+RT A+YP M VNV+FILVN+L+YSLFFGLPSYLQIV Sbjct: 241 IGLLSLGAFVRHELKAKSPFIPLRTIAQYPAMTWVNVQFILVNILFYSLFFGLPSYLQIV 300 Query: 301 RHVSEFHTGILMLSLGLCSLIASPIAGRWIDRSGPGPALFLSAILMALGSVWIVTMNQSS 360 RHVSEFHTG+LMLSLGLCSL ASP+AG+WID+SGP PALF+SAILM GSVWIVT+N+SS Sbjct: 301 RHVSEFHTGMLMLSLGLCSLAASPLAGKWIDKSGPRPALFVSAILMVFGSVWIVTLNESS 360 Query: 361 PVISVCVALGAFGIGNGLNSVGMQAALFKSAPKEIIGVASGVFMTSRYXXXXXXXXXXXX 420 PVISVC+AL AFGI NGLNSVGMQ ALF S+PKEIIGVASG+F TSRY Sbjct: 361 PVISVCIALAAFGISNGLNSVGMQTALFDSSPKEIIGVASGLFNTSRYLGTIISSLLTGI 420 Query: 421 VMGDTFSAGGFRLLGVILSAIALVLVFMNWRQRESKPLQ 459 VMG FS GFR+LG+IL+ IAL LV M+WR+ S L+ Sbjct: 421 VMGGEFSFTGFRILGIILTVIALTLVLMSWRRARSAQLK 459 >C0Z976.1 C0Z976_BREBN Conserved hypothetical membrane protein Length = 460 Score = 652 bits (1682), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/456 (70%), Positives = 372/456 (81%), Gaps = 1/456 (0%) Query: 1 MNARSRWLLISVGLGVLLNPLNSSMISVAIARLQNVYRLDFTEVSWIIFSFYIASAVAQP 60 M A +RWL+I+VGLG++LNPLNSSMISVAIARLQNVYRLDFT VSWIIFSFYIASA+AQP Sbjct: 1 MGAHNRWLMIAVGLGIMLNPLNSSMISVAIARLQNVYRLDFTVVSWIIFSFYIASAIAQP 60 Query: 61 IMGKASDLFGRRKIFLAGLVVAFVASLAAPLAPGFGWLIVFRIVQSIGTSMMVSVGMAIV 120 +MGKASDLFGR+KIFL GLVV+FVASL APL+P FGWLIVFRIVQSIGTSMMV+VGMA+V Sbjct: 61 VMGKASDLFGRKKIFLIGLVVSFVASLLAPLSPNFGWLIVFRIVQSIGTSMMVAVGMALV 120 Query: 121 RVHITEKQASALSVMSIFLSGAAAIGPFIGGVVIHWWDWHGIFFVNIPFAAASFLLAWRA 180 R+HITEKQA+ALSV+SIFLSGAAAIGPFIGGV++H+WDW IF +NIPF AS LLAWR Sbjct: 121 RIHITEKQATALSVLSIFLSGAAAIGPFIGGVLLHYWDWSAIFLINIPFVVASLLLAWRM 180 Query: 181 IPKDEPPVAALRNMSFRQWITMIDAPGIXXXXXXXXXXXXXXXXXXXXXHISFGHVLTGG 240 IP DE + +NMSFR+W+ +IDA GI H+S+ H++ GG Sbjct: 181 IPNDESAASVTQNMSFRKWLELIDATGIVLFAVGLVALLVGLLSAKSSGHVSWWHIMVGG 240 Query: 241 IGLIALVAFVRHELKASSPFIPVRTFAKYPEMARVNVEFILVNVLYYSLFFGLPSYLQIV 300 IG + L AFVRHELK +SPFIP+RTFAKYP M VN+EF+LVNVL+YSLFFGLPSYLQ+V Sbjct: 241 IGFVTLGAFVRHELKTTSPFIPLRTFAKYPAMTWVNIEFMLVNVLFYSLFFGLPSYLQMV 300 Query: 301 RHVSEFHTGILMLSLGLCSLIASPIAGRWIDRSGPGPALFLSAILMALGSVWIVTMNQSS 360 RHVSEFHTG+LMLSLGLCSLI SP+AGRWID SGP PAL SAILM GS+W+V NQ S Sbjct: 301 RHVSEFHTGMLMLSLGLCSLIVSPLAGRWIDHSGPRPALLASAILMTFGSLWLVMFNQDS 360 Query: 361 PVISVCVALGAFGIGNGLNSVGMQAALFKSAPKEIIGVASGVFMTSRYXXXXXXXXXXXX 420 V+SVCVAL AFGI NGLN+VGMQAALFKS+PKEIIGVASG+F TSRY Sbjct: 361 QVVSVCVALAAFGISNGLNNVGMQAALFKSSPKEIIGVASGLFNTSRYLGTILSSLLISI 420 Query: 421 VMGDTFSAGGFRLLGVILSAIALVLVFMNWRQRESK 456 VMGDTFS G ++LG+IL+ I+L LV M+WR RES+ Sbjct: 421 VMGDTFSTEGLQVLGMILTTISLSLVLMSWR-RESR 455 >B7DMP9.1 B7DMP9_9BACL Major facilitator superfamily MFS_1 Length = 458 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 192/448 (42%), Positives = 275/448 (61%), Gaps = 9/448 (2%) Query: 4 RSRWLLISVGLGVLLNPLNSSMISVAIARLQNVYRLDFTEVSWIIFSFYIASAVAQPIMG 63 R L+++ LGVLLNPLNSSMISVA+A+ ++V+ + FT SW+I S+Y+ASAVAQPIMG Sbjct: 15 RRALFLVTIALGVLLNPLNSSMISVAMAKFEHVFHVHFTTASWLISSYYLASAVAQPIMG 74 Query: 64 KASDLFGRRKIFLAGLVVAFVASLAAPLAPGFGWLIVFRIVQSIGTSMMVSVGMAIVRVH 123 K +DL GR+ +FL GL + ++ AP AP F WL+VFR++QS+G+ + GM IVR Sbjct: 75 KVADLVGRKPLFLIGLALVTLSCALAPFAPSFTWLVVFRLIQSLGSGAIYPAGMGIVRNV 134 Query: 124 ITEKQASALSVMSIFLSGAAAIGPFIGGVVIHWWDWHGIFFVNIPFAAASFLLAWRAIPK 183 IT++QA AL+ +S+F SGAAA GP IGGV+IH+ DW GIF VN PF ASF LA +P Sbjct: 135 ITDRQAQALAFLSVFSSGAAAFGPSIGGVIIHYLDWQGIFLVNFPFVIASFFLAVFVLPN 194 Query: 184 DEPPVAALRNMSFRQWITMIDAPGIXXXXXXXXXXXXXXXXXXXXXHISFGHVLTGGIGL 243 + S R+ + ID PGI ++ +T GL Sbjct: 195 PRRG----EHQSAREVLREIDLPGI--ALFILAIATSLVFLLSLTERPAWWAAVT---GL 245 Query: 244 IALVAFVRHELKASSPFIPVRTFAKYPEMARVNVEFILVNVLYYSLFFGLPSYLQIVRHV 303 +A AF E A SPF+ +R F +Y + V V+F VN+++YS+FFG+P+YLQ VR Sbjct: 246 VAFAAFGWREHVAHSPFLSLRFFKRYTSLTWVLVQFTTVNIIFYSIFFGMPTYLQEVRGF 305 Query: 304 SEFHTGILMLSLGLCSLIASPIAGRWIDRSGPGPALFLSAILMALGSVWIVTMNQSSPVI 363 TG++ML++ SLI +PI GRW+ RSG P L L+A+ M GS+ ++T++ +SPV Sbjct: 306 DSQETGLIMLAVAGFSLITAPITGRWVARSGSRPPLVLAALFMTAGSLLMLTLHTASPVW 365 Query: 364 SVCVALGAFGIGNGLNSVGMQAALFKSAPKEIIGVASGVFMTSRYXXXXXXXXXXXXVMG 423 +CV L G+ NG N+VG+Q ALF ++P+E+I ASG+F SRY + G Sbjct: 366 WLCVVLSVLGLSNGFNNVGLQTALFAASPREVISTASGLFQMSRYMGTILSTVVLGLLFG 425 Query: 424 DTFSAGGFRLLGVILSAIALVLVFMNWR 451 + +L V+L+ + +++ M+ R Sbjct: 426 ARLTTSELHVLAVVLTCLGALVLAMSVR 453 >C1PQA6.1 C1PQA6_ALIAC Arabinose efflux permease family protein Length = 458 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 189/448 (42%), Positives = 275/448 (61%), Gaps = 9/448 (2%) Query: 4 RSRWLLISVGLGVLLNPLNSSMISVAIARLQNVYRLDFTEVSWIIFSFYIASAVAQPIMG 63 R L+++ LGVLLNPLNSSMISVA+A+ ++V+ + FT SW+I S+Y+ASAVAQPIMG Sbjct: 15 RRALFLVTIALGVLLNPLNSSMISVAMAKFEHVFHVHFTTASWLISSYYLASAVAQPIMG 74 Query: 64 KASDLFGRRKIFLAGLVVAFVASLAAPLAPGFGWLIVFRIVQSIGTSMMVSVGMAIVRVH 123 K +DL GR+ +FL GL + ++ AP AP F WL+VFR++QS+G+ + GM IVR Sbjct: 75 KVADLVGRKPLFLIGLALVSLSCALAPFAPSFTWLVVFRLIQSLGSGAIYPAGMGIVRNV 134 Query: 124 ITEKQASALSVMSIFLSGAAAIGPFIGGVVIHWWDWHGIFFVNIPFAAASFLLAWRAIPK 183 IT++QA AL+ +S+F SGAAA GP IGGV++++ DW GIF VN PF ASFLLA +P Sbjct: 135 ITDRQAQALAFLSVFSSGAAAFGPSIGGVIMNYLDWQGIFLVNFPFVVASFLLAIFVLPN 194 Query: 184 DEPPVAALRNMSFRQWITMIDAPGIXXXXXXXXXXXXXXXXXXXXXHISFGHVLTGGIGL 243 + S R+ + ID PGI ++ +T GL Sbjct: 195 PRRG----EHQSAREVLREIDLPGI--ALFILAIATSLVFLLSLTERPAWWAAVT---GL 245 Query: 244 IALVAFVRHELKASSPFIPVRTFAKYPEMARVNVEFILVNVLYYSLFFGLPSYLQIVRHV 303 +A AF E A SPF+ +R F +Y + V V+F VN+++YS+FFG+P+YLQ VR Sbjct: 246 VAFAAFGWREHVAPSPFLSLRFFKRYTSLTWVLVQFTTVNIIFYSIFFGMPTYLQEVRGF 305 Query: 304 SEFHTGILMLSLGLCSLIASPIAGRWIDRSGPGPALFLSAILMALGSVWIVTMNQSSPVI 363 TG++ML++ SLI +PI GRW+ RSG P L L+A+ M GS+ ++T++ +SPV Sbjct: 306 DSQETGLIMLAVAGFSLITAPITGRWVARSGSRPPLVLAAVFMTAGSLLMLTLHTASPVW 365 Query: 364 SVCVALGAFGIGNGLNSVGMQAALFKSAPKEIIGVASGVFMTSRYXXXXXXXXXXXXVMG 423 +CV L G+ NG N+VG+Q ALF ++P+E+I ASG+F +RY + G Sbjct: 366 WLCVVLSVLGLSNGFNNVGLQTALFAASPREVISTASGLFQMARYMGTILSTVVLGLLFG 425 Query: 424 DTFSAGGFRLLGVILSAIALVLVFMNWR 451 + +L +L+ + +++ M+ R Sbjct: 426 ARLTTSELHVLAAVLACLGALVLAMSLR 453 >B3KHR6.1 B3KHR6_9BACI Major facilitator superfamily MFS_1 Length = 201 Score = 319 bits (817), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 158/199 (79%), Positives = 179/199 (89%), Gaps = 1/199 (0%) Query: 1 MNARSRWLLISVGLGVLLNPLNSSMISVAIARLQNVYRLDFTEVSWIIFSFYIASAVAQP 60 M+ R+RWL+ISVGLG+LLNPLNSSM+SVAI RLQNV+ LDFT VSWIIFSFYIASA+AQP Sbjct: 1 MSIRNRWLMISVGLGILLNPLNSSMVSVAIPRLQNVFHLDFTVVSWIIFSFYIASAIAQP 60 Query: 61 IMGKASDLFGRRKIFLAGLVVAFVASLAAPLAPGFGWLIVFRIVQSIGTSMMVSVGMAIV 120 IMGKASDLFGRR+IFL+GLVV+FVASL APL+ FGWLIVFRIVQSIGTSMMV+VGMAIV Sbjct: 61 IMGKASDLFGRRRIFLSGLVVSFVASLLAPLSLNFGWLIVFRIVQSIGTSMMVAVGMAIV 120 Query: 121 RVHITEKQASALSVMSIFLSGAAAIGPFIGGVVIHWWDWHGIFFVNIPFAAASFLLAWRA 180 R+HI EKQA+ALSV+SIFLSGAAA+GPFIGGV+IHWW W IF VNIPF SFLLAWR Sbjct: 121 RIHIREKQATALSVLSIFLSGAAAVGPFIGGVIIHWWSWPAIFLVNIPFVVTSFLLAWRH 180 Query: 181 IPKDEPPVAAL-RNMSFRQ 198 IPKD+P ++ RNMSFR+ Sbjct: 181 IPKDDPSTTSVARNMSFRK 199 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.141 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,438,465,365 Number of extensions: 92006698 Number of successful extensions: 409774 Number of sequences better than 1.0e-05: 10058 Number of HSP's gapped: 404019 Number of HSP's successfully gapped: 10973 Length of query: 459 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 320 Effective length of database: 1,751,175,118 Effective search space: 560376037760 Effective search space used: 560376037760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 133 (55.8 bits)