BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0270.0007.p
         (137 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K739.1 B3K739_9BACI Short-chain dehydrogenase/reductase SDR         222   7e-57
Q65GX4.1 Q65GX4_BACLD Short-chain dehydrogenase/reductase             218   2e-55
Q2BCI9.1 Q2BCI9_9BACI Putative uncharacterized protein                210   3e-53
A3I6E0.1 A3I6E0_9BACI Putative uncharacterized protein                207   2e-52
C0ZD42.1 C0ZD42_BREBN Putative uncharacterized protein                197   4e-49

>B3K739.1 B3K739_9BACI Short-chain dehydrogenase/reductase SDR
          Length = 264

 Score =  222 bits (566), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 104/137 (75%), Positives = 114/137 (83%)

Query: 1   MLKKDYGRIIFIASEEAIMPSGQMPQYXXXXXXXXXXXXXXXXXXRGTEVTVNTIMPGPT 60
           MLK D+GRIIF+ASEEA+MPSGQMPQY                  RGTEVT+NTIMPGPT
Sbjct: 128 MLKNDFGRIIFMASEEAVMPSGQMPQYCMTKSMLLSLAKSLSKLTRGTEVTINTIMPGPT 187

Query: 61  LSENVRQIIDGVYANEDMTFSEKEKKFMTANLPQSEIQRFIKPIEIGRLAAFVCSPYASA 120
           LSENV+ II+G+YANEDMTFSEKEK FM ANLPQSEIQRFI+PIEIGRLA F+CSPYASA
Sbjct: 188 LSENVQHIIEGIYANEDMTFSEKEKAFMAANLPQSEIQRFIRPIEIGRLATFLCSPYASA 247

Query: 121 FKGSPIRMDGGMVPTIF 137
           F+GSPIRMDGGMVPTIF
Sbjct: 248 FRGSPIRMDGGMVPTIF 264


>Q65GX4.1 Q65GX4_BACLD Short-chain dehydrogenase/reductase
          Length = 264

 Score =  218 bits (554), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 108/137 (78%), Positives = 114/137 (83%)

Query: 1   MLKKDYGRIIFIASEEAIMPSGQMPQYXXXXXXXXXXXXXXXXXXRGTEVTVNTIMPGPT 60
           MLK D+GRIIFIASEEA+MPSGQMPQY                   GTEVTVNTIMPGPT
Sbjct: 128 MLKSDFGRIIFIASEEAMMPSGQMPQYCMTKSMLLSLSKSLSKLTIGTEVTVNTIMPGPT 187

Query: 61  LSENVRQIIDGVYANEDMTFSEKEKKFMTANLPQSEIQRFIKPIEIGRLAAFVCSPYASA 120
           LSENV+QII+G+Y +E MTFSEKEKKFMT NLPQSEIQRFIKPIEIGRLAAFVCSPYASA
Sbjct: 188 LSENVKQIIEGMYPDEGMTFSEKEKKFMTTNLPQSEIQRFIKPIEIGRLAAFVCSPYASA 247

Query: 121 FKGSPIRMDGGMVPTIF 137
           FKGSPIRMDGGMVPTIF
Sbjct: 248 FKGSPIRMDGGMVPTIF 264


>Q2BCI9.1 Q2BCI9_9BACI Putative uncharacterized protein
          Length = 264

 Score =  210 bits (535), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/137 (72%), Positives = 111/137 (81%)

Query: 1   MLKKDYGRIIFIASEEAIMPSGQMPQYXXXXXXXXXXXXXXXXXXRGTEVTVNTIMPGPT 60
           ML   +GR+IFIASEEA+MPSGQMPQY                  +GTEVTVNTIMPGPT
Sbjct: 128 MLNNGFGRVIFIASEEAVMPSGQMPQYCMTKSMVLSLSKSLSKLTKGTEVTVNTIMPGPT 187

Query: 61  LSENVRQIIDGVYANEDMTFSEKEKKFMTANLPQSEIQRFIKPIEIGRLAAFVCSPYASA 120
           LSENV QIIDG+Y +EDM+F EKEKKFM  NLPQSE+QRFI+PIEIGRLAAFVCSPYA+A
Sbjct: 188 LSENVHQIIDGIYPDEDMSFPEKEKKFMNLNLPQSELQRFIRPIEIGRLAAFVCSPYANA 247

Query: 121 FKGSPIRMDGGMVPTIF 137
           FKGSPIRMDGGMVPTI+
Sbjct: 248 FKGSPIRMDGGMVPTIY 264


>A3I6E0.1 A3I6E0_9BACI Putative uncharacterized protein
          Length = 264

 Score =  207 bits (528), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/137 (72%), Positives = 110/137 (80%)

Query: 1   MLKKDYGRIIFIASEEAIMPSGQMPQYXXXXXXXXXXXXXXXXXXRGTEVTVNTIMPGPT 60
           ML+ ++GRIIFIASEEAIMPSGQMPQY                  +GTEVTVNTIMPGPT
Sbjct: 128 MLENEFGRIIFIASEEAIMPSGQMPQYCMTKTMLLSLSKSLSQLTKGTEVTVNTIMPGPT 187

Query: 61  LSENVRQIIDGVYANEDMTFSEKEKKFMTANLPQSEIQRFIKPIEIGRLAAFVCSPYASA 120
           LSENV  IID +Y N++M+F+EKE KFMT NLPQSEIQRFIKPIEIGR+  F+CSPYASA
Sbjct: 188 LSENVYAIIDSMYTNQEMSFTEKEHKFMTTNLPQSEIQRFIKPIEIGRITTFICSPYASA 247

Query: 121 FKGSPIRMDGGMVPTIF 137
           FKGSPIRMDGGMVPTIF
Sbjct: 248 FKGSPIRMDGGMVPTIF 264


>C0ZD42.1 C0ZD42_BREBN Putative uncharacterized protein
          Length = 263

 Score =  197 bits (500), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 98/137 (71%), Positives = 107/137 (78%), Gaps = 1/137 (0%)

Query: 1   MLKKDYGRIIFIASEEAIMPSGQMPQYXXXXXXXXXXXXXXXXXXRGTEVTVNTIMPGPT 60
           MLK ++GRIIFIASEEAIMPSGQMPQY                  RGTEVT NTIMPGPT
Sbjct: 128 MLKNNFGRIIFIASEEAIMPSGQMPQYCMTKSMLLSLSKSLSKRTRGTEVTSNTIMPGPT 187

Query: 61  LSENVRQIIDGVYANEDMTFSEKEKKFMTANLPQSEIQRFIKPIEIGRLAAFVCSPYASA 120
           LSENV QIID ++  +D+ FSEKE +FM ANLPQSE+QRFIKP EIGRL AFV SPYA+A
Sbjct: 188 LSENVYQIIDSLFP-DDLAFSEKENQFMAANLPQSELQRFIKPFEIGRLVAFVSSPYATA 246

Query: 121 FKGSPIRMDGGMVPTIF 137
           FKGSPIRMDGGMVPTIF
Sbjct: 247 FKGSPIRMDGGMVPTIF 263


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.136    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 663,810,013
Number of extensions: 20181295
Number of successful extensions: 54038
Number of sequences better than 1.0e-05: 313
Number of HSP's gapped: 54458
Number of HSP's successfully gapped: 313
Length of query: 137
Length of database: 3,060,696,203
Length adjustment: 101
Effective length of query: 36
Effective length of database: 2,109,173,688
Effective search space: 75930252768
Effective search space used: 75930252768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)