BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0270.0006.p
         (135 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65GX4.1 Q65GX4_BACLD Short-chain dehydrogenase/reductase             176   5e-43
C0ZD42.1 C0ZD42_BREBN Putative uncharacterized protein                172   9e-42
A3I6E0.1 A3I6E0_9BACI Putative uncharacterized protein                171   2e-41
Q2BCI9.1 Q2BCI9_9BACI Putative uncharacterized protein                166   5e-40
B3K739.1 B3K739_9BACI Short-chain dehydrogenase/reductase SDR         164   2e-39

>Q65GX4.1 Q65GX4_BACLD Short-chain dehydrogenase/reductase
          Length = 264

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 96/110 (87%), Gaps = 3/110 (2%)

Query: 1   MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60
           MDMGL NKTAL      STKGIGKAIA+ELAKEGV+VLINGR+ EEAERTVNE+KS FP 
Sbjct: 1   MDMGLKNKTALVTG---STKGIGKAIAIELAKEGVHVLINGRNEEEAERTVNEIKSAFPD 57

Query: 61  TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110
           T PQNAAADIVD RQREALF+K+P IDILVNN GIYE+MQYEDVDDE+WE
Sbjct: 58  TFPQNAAADIVDIRQREALFKKHPQIDILVNNMGIYELMQYEDVDDEVWE 107


>C0ZD42.1 C0ZD42_BREBN Putative uncharacterized protein
          Length = 263

 Score =  172 bits (436), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 94/110 (85%), Gaps = 3/110 (2%)

Query: 1   MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60
           MDMGL NKTAL      STKGIGKAIA+ELA+EG NVL+NGR+ EE ER VNE+K+ FPA
Sbjct: 1   MDMGLRNKTALVTG---STKGIGKAIAIELAREGANVLVNGRNDEEVERIVNELKAEFPA 57

Query: 61  TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110
           TSPQNA ADIVD +QREALFEKYP++DILVNN GIYEIM YEDVDDE+WE
Sbjct: 58  TSPQNATADIVDRQQREALFEKYPNVDILVNNMGIYEIMSYEDVDDEVWE 107


>A3I6E0.1 A3I6E0_9BACI Putative uncharacterized protein
          Length = 264

 Score =  171 bits (433), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 84/110 (76%), Positives = 93/110 (84%), Gaps = 3/110 (2%)

Query: 1   MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60
           MDMGLNNKTAL      ST+GIGKAIA ELAKEGV+VLINGR+Y E ER VNE+KS +P+
Sbjct: 1   MDMGLNNKTALVTG---STRGIGKAIAFELAKEGVHVLINGRNYNEVERIVNEIKSAYPS 57

Query: 61  TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110
           TSPQNA AD+ DT+QREALFEKYP IDILVNN GIYE+M YEDVDD IWE
Sbjct: 58  TSPQNATADLADTQQREALFEKYPHIDILVNNMGIYEMMSYEDVDDGIWE 107


>Q2BCI9.1 Q2BCI9_9BACI Putative uncharacterized protein
          Length = 264

 Score =  166 bits (421), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 83/110 (75%), Positives = 92/110 (83%), Gaps = 3/110 (2%)

Query: 1   MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60
           MDMGL NKTAL      ST+GIG+AIA+ELAKEGVNVLINGR+ EE ER VNEMK +FP 
Sbjct: 1   MDMGLKNKTALVTG---STRGIGRAIAIELAKEGVNVLINGRNGEEVERIVNEMKLDFPN 57

Query: 61  TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110
           T+P NA ADIVD  QREALF KYP+IDILVNN GIYEIM+YEDVDDE+WE
Sbjct: 58  TAPGNATADIVDRNQREALFRKYPNIDILVNNMGIYEIMEYEDVDDEVWE 107


>B3K739.1 B3K739_9BACI Short-chain dehydrogenase/reductase SDR
          Length = 264

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 82/110 (74%), Positives = 91/110 (82%), Gaps = 3/110 (2%)

Query: 1   MDMGLNNKTALXXXXXXSTKGIGKAIAVELAKEGVNVLINGRSYEEAERTVNEMKSNFPA 60
           MDM LNNKTAL      STKGIGKAIA+ELA+EG +VLINGR+ EE ERTV+E+KS FP 
Sbjct: 1   MDMELNNKTALVTG---STKGIGKAIAMELAREGAHVLINGRNDEEVERTVHEIKSKFPN 57

Query: 61  TSPQNAAADIVDTRQREALFEKYPDIDILVNNTGIYEIMQYEDVDDEIWE 110
           TSPQ A AD+VD  QREALFEKYP +DILVNN GIYEIM YEDVDDE+WE
Sbjct: 58  TSPQKATADLVDIGQREALFEKYPHVDILVNNMGIYEIMSYEDVDDEVWE 107


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 720,269,538
Number of extensions: 27470952
Number of successful extensions: 104612
Number of sequences better than 1.0e-05: 588
Number of HSP's gapped: 109375
Number of HSP's successfully gapped: 588
Length of query: 135
Length of database: 3,060,696,203
Length adjustment: 99
Effective length of query: 36
Effective length of database: 2,128,015,718
Effective search space: 76608565848
Effective search space used: 76608565848
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)