BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0005.p (233 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K740.1 B3K740_9BACI Helix-turn-helix-domain containing protein... 352 2e-95 C0ZD41.1 C0ZD41_BREBN Probable transcriptional regulator 348 2e-94 A3I6D9.1 A3I6D9_9BACI Putative uncharacterized protein 338 2e-91 Q65GX5.1 Q65GX5_BACLD Putative uncharacterized protein 338 2e-91 Q2BCI8.1 Q2BCI8_9BACI Putative uncharacterized protein 310 5e-83 >B3K740.1 B3K740_9BACI Helix-turn-helix-domain containing protein AraC type Length = 343 Score = 352 bits (903), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/219 (76%), Positives = 193/219 (88%) Query: 1 LRITEEGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMGD 60 LRITEEGE CTI LEW + Q GPPML+GITLAYLLELGRRGTG PL AR+VEFS+ MGD Sbjct: 112 LRITEEGELCTIDLEWGNSLQTGPPMLVGITLAYLLELGRRGTGQPLRARLVEFSEPMGD 171 Query: 61 VQTLEAYFGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSI 120 V+TLEA+FGC +R GA NRL+L R+DLDRPF+SYNEELLEILTPALDRSL E++ +RS+ Sbjct: 172 VETLEAFFGCRIRFGAARNRLSLLRQDLDRPFISYNEELLEILTPALDRSLDERRNSRSV 231 Query: 121 SGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYL 180 S MVKWI+KR L GG DI VAKE+G+SDRTLQR+L+DENT++K LLTQARHEQA+EYL Sbjct: 232 SDMVKWILKRCLMGGHHDIHVVAKEMGMSDRTLQRKLTDENTSYKQLLTQARHEQAIEYL 291 Query: 181 ADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWRV 219 AD S+DIKEVAF+IGYADQNSFYRAFR+WEGDTPSNWR Sbjct: 292 ADPSIDIKEVAFLIGYADQNSFYRAFRMWEGDTPSNWRA 330 >C0ZD41.1 C0ZD41_BREBN Probable transcriptional regulator Length = 341 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 173/225 (76%), Positives = 194/225 (86%), Gaps = 3/225 (1%) Query: 1 LRITEEGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMGD 60 LRITEEGE CTI LEW+ +EQPGPP+L+G TLA+LLELGRRGTG LTA+ VEFS MGD Sbjct: 110 LRITEEGERCTIDLEWMHSEQPGPPVLIGTTLAFLLELGRRGTGKRLTAQSVEFSHAMGD 169 Query: 61 VQTLEAYFGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSI 120 V LEAYFGCP+R GA NRLTLHR+DLDRPF+SYN+ELLEILTP LDRSL EQ + S+ Sbjct: 170 VTALEAYFGCPIRNGATDNRLTLHRRDLDRPFLSYNKELLEILTPVLDRSLDEQG-SHSV 228 Query: 121 SGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYL 180 + VKWI+KRSLTGGR DIQAVA ELG+SDRTLQRRL+DE+TTFK LLTQARHEQA EYL Sbjct: 229 AEKVKWILKRSLTGGRLDIQAVASELGMSDRTLQRRLADESTTFKQLLTQARHEQAREYL 288 Query: 181 ADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWRVKQEFWR 225 AD LDIKEVAF++GY DQNSFYRAFRLWEGDTPSNWR E++R Sbjct: 289 ADPKLDIKEVAFLLGYEDQNSFYRAFRLWEGDTPSNWR--SEYFR 331 >A3I6D9.1 A3I6D9_9BACI Putative uncharacterized protein Length = 327 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 162/221 (73%), Positives = 186/221 (84%) Query: 1 LRITEEGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMGD 60 LRITEEGE+CTI L+W EQ GPPML+GITLA+LLELGRRGT PLTA+ VEFS MGD Sbjct: 102 LRITEEGENCTIELQWSDREQSGPPMLVGITLAFLLELGRRGTDSPLTAKCVEFSHSMGD 161 Query: 61 VQTLEAYFGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSI 120 +Q LEAYFGC +++G NRLTLHR+DLD PF SYN ELLE+LTP LD+SL E Q++ S+ Sbjct: 162 IQMLEAYFGCCIQIGTKWNRLTLHREDLDHPFSSYNLELLEMLTPLLDQSLSEHQQSHSL 221 Query: 121 SGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYL 180 + VKW+MKRSL GGRPDIQ VA ELG+SDRTLQRRLSDE T+FK+LLT+ RHEQA YL Sbjct: 222 TETVKWMMKRSLMGGRPDIQTVASELGMSDRTLQRRLSDECTSFKNLLTEVRHEQAQVYL 281 Query: 181 ADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWRVKQ 221 AD +LDIKEVAF+IGY DQNSFYRAFRLWEGDTP+NWR K Sbjct: 282 ADPTLDIKEVAFLIGYEDQNSFYRAFRLWEGDTPANWRTKH 322 >Q65GX5.1 Q65GX5_BACLD Putative uncharacterized protein Length = 335 Score = 338 bits (867), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/220 (75%), Positives = 183/220 (83%) Query: 1 LRITEEGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMGD 60 LRITEE E C I LEWL + PGPP+L+GITLA+LLELGRRGTG PLTA+ VEF+ MGD Sbjct: 109 LRITEEDEHCAIELEWLDDKLPGPPLLIGITLAFLLELGRRGTGQPLTAKSVEFAHPMGD 168 Query: 61 VQTLEAYFGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSI 120 +Q LEAYFGC +R GA NRLTL+R DLDRPFVSYN ELLEILTP LD+SL +QQ + SI Sbjct: 169 MQALEAYFGCRIRSGAARNRLTLNRGDLDRPFVSYNAELLEILTPVLDQSLNDQQNSLSI 228 Query: 121 SGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYL 180 SG VKWIMKR+L GG PDIQ VA ELG+S RTLQRRL+DE T+FK LL Q RHEQA EYL Sbjct: 229 SGAVKWIMKRTLPGGHPDIQTVASELGMSGRTLQRRLTDEGTSFKQLLIQVRHEQAREYL 288 Query: 181 ADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWRVK 220 AD SLDIKEVA +IGY DQNSFYRAFRLWEG+TPSNWR K Sbjct: 289 ADPSLDIKEVAILIGYEDQNSFYRAFRLWEGETPSNWRKK 328 >Q2BCI8.1 Q2BCI8_9BACI Putative uncharacterized protein Length = 344 Score = 310 bits (795), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 146/218 (66%), Positives = 176/218 (80%) Query: 1 LRITEEGESCTIALEWLCTEQPGPPMLMGITLAYLLELGRRGTGLPLTARIVEFSDDMGD 60 L +T EGE C I LEW T + GPP+L GITL++L+ELGRRGTG PL AR VEFS MG+ Sbjct: 117 LLVTTEGEYCHIDLEWQHTGESGPPLLAGITLSFLIELGRRGTGKPLIARFVEFSHPMGN 176 Query: 61 VQTLEAYFGCPVRMGAPCNRLTLHRKDLDRPFVSYNEELLEILTPALDRSLGEQQRNRSI 120 V LEAYFGC +R+GA NRLTLH+KDL PF+SYN ELLE LTP LD+SL EQQR+RS Sbjct: 177 VNALEAYFGCSIRIGADRNRLTLHQKDLVLPFISYNLELLEALTPVLDQSLNEQQRSRSN 236 Query: 121 SGMVKWIMKRSLTGGRPDIQAVAKELGISDRTLQRRLSDENTTFKHLLTQARHEQALEYL 180 + +VKWI++RSL GRP+I VA ELG+SDRTLQRRL++E T F HLL + RH QA +YL Sbjct: 237 TEVVKWIIERSLADGRPNIHTVAGELGMSDRTLQRRLTEEGTGFNHLLAEVRHSQARKYL 296 Query: 181 ADSSLDIKEVAFMIGYADQNSFYRAFRLWEGDTPSNWR 218 ++ S+DIKEVAF++GY DQN+F+RAFRLWEGDTPSNWR Sbjct: 297 SNPSIDIKEVAFLVGYEDQNAFFRAFRLWEGDTPSNWR 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,447,399,742 Number of extensions: 58050097 Number of successful extensions: 146558 Number of sequences better than 1.0e-05: 1302 Number of HSP's gapped: 147117 Number of HSP's successfully gapped: 1302 Length of query: 233 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 102 Effective length of database: 1,826,543,238 Effective search space: 186307410276 Effective search space used: 186307410276 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)