BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0002.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K863.1 B3K863_9BACI Regulatory protein DeoR 190 1e-46 C0ZH62.1 C0ZH62_BREBN Putative transcriptional regulator 181 6e-44 A3IC88.1 A3IC88_9BACI Lactose phosphotransferase system repressor 169 3e-40 B1HR56.1 B1HR56_LYSSC Putative HTH-type transcriptional regulator 169 4e-40 C0ZJ97.1 C0ZJ97_BREBN Putative transcriptional regulator 168 4e-40 >B3K863.1 B3K863_9BACI Regulatory protein DeoR Length = 256 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 101/209 (48%), Positives = 143/209 (68%), Gaps = 5/209 (2%) Query: 16 ILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSYT 75 IL QLE GKVKV LA+QLEVS ETIRRDLD LE++ +L++VYGGAVK EPS+T Sbjct: 12 ILNQLELEGKVKVHALAEQLEVSAETIRRDLDRLEKEGQLRKVYGGAVKSRSGHIEPSFT 71 Query: 76 MRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXXX 135 R + E K AIG+ AA L++DG+TV +D GTT +E+ R+L + ++T++T+ Sbjct: 72 SRSQTCAEEKAAIGKLAASLVKDGETVLLDNGTTTIEVMRYLKDRPDVTVITH-----SL 126 Query: 136 XXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGITD 195 E F G++I +GG++ +Q+ +G L LL+QF ++KAF+SVGGIS GITD Sbjct: 127 PILNLAMEMFQGRIIFIGGDMDRTKQASTGPLTEMLLEQFKVNKAFISVGGISLTDGITD 186 Query: 196 YDMNESLVSRLAAGQASEVILLADHSKIG 224 YD++E+ +SR +A E I+LADH+K+G Sbjct: 187 YDLDEAYISRKMLARAEEGIVLADHTKLG 215 >C0ZH62.1 C0ZH62_BREBN Putative transcriptional regulator Length = 266 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 98/210 (46%), Positives = 130/210 (61%), Gaps = 1/210 (0%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 +IL +L GK++V+ LA+ L V+ ETIRRDLD LE+QR LKRVYGGA+ EP + Sbjct: 11 VILAELNRHGKIQVMSLAKTLAVTPETIRRDLDQLEQQRLLKRVYGGAIPYHLAKREPHF 70 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 ++ + Q K IG+ AA LL DGDT+ +D GTT LE+ R + G +TIVTN Sbjct: 71 EKKQAIQQTAKTKIGQIAAELLSDGDTIALDVGTTTLELARAIKGLNQLTIVTNSLPAAS 130 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 QF G+VI+LGG Q+SV+G ELL +F DKAF+S GGI+ A G T Sbjct: 131 LLNELLEANQFNGQVIMLGGLTHPAQKSVAGAFTCELLSRFHFDKAFISCGGIT-ADGFT 189 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIG 224 DYDM E+L S + ++ +V +L D SKIG Sbjct: 190 DYDMEETLCSTMMVQRSEQVYVLGDTSKIG 219 >A3IC88.1 A3IC88_9BACI Lactose phosphotransferase system repressor Length = 260 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 129/210 (61%), Gaps = 1/210 (0%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 IL+QLE GK+ V +A L+V+ ETIRRD D LE+QR L RV+GGA+K T+ EP++ Sbjct: 11 FILKQLEWEGKIIVANIADALQVAPETIRRDFDELEQQRLLTRVHGGAIKYTNVRNEPAF 70 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 + ++ +E K+ I R AA+ + DGDT+ +DTGTT + + +L +IT+VTN Sbjct: 71 LRKLQMQKEAKRQIARMAAKRISDGDTIAIDTGTTTVHIADFLLAVDDITVVTNSIAAAV 130 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 + TGKVILLGG + +Q SV+G + E+L DKAF+S GGIS + Sbjct: 131 QFNLAIEERRMTGKVILLGGTANPRQSSVAGAMTLEMLDNMNFDKAFISCGGISDGV-VY 189 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIG 224 DYD++ESL+S+ + LLAD SKI Sbjct: 190 DYDLDESLISKKMQKHSKVNYLLADASKIN 219 >B1HR56.1 B1HR56_LYSSC Putative HTH-type transcriptional regulator Length = 260 Score = 169 bits (427), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 129/210 (61%), Gaps = 1/210 (0%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 IL+QLE GK+ V +A L+V+ ETIRRD D LE+QR L RV+GGA+K T+ EP++ Sbjct: 11 FILKQLEREGKIIVANIADALQVAPETIRRDFDELEQQRLLTRVHGGAIKYTNVRNEPAF 70 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 + ++ +E K+ I R AA+ + DGDT+ +DTGTT + + +L +IT+VTN Sbjct: 71 LRKLQMQKEAKRQIARMAAKRIGDGDTIAIDTGTTTVHIADFLLAVDDITVVTNSIAAAV 130 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 + TGKVILLGG + +Q SV+G + E+L DKAF+S GGIS + Sbjct: 131 QFNLAIEERRMTGKVILLGGTANPRQSSVAGAMTLEMLDNMNFDKAFISCGGISEGV-VY 189 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIG 224 DYD++ESL+S+ + LLAD SKI Sbjct: 190 DYDLDESLISKKMQKHSKVNYLLADASKIN 219 >C0ZJ97.1 C0ZJ97_BREBN Putative transcriptional regulator Length = 262 Score = 168 bits (426), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 91/210 (43%), Positives = 132/210 (62%) Query: 15 LILQQLEETGKVKVIPLAQQLEVSNETIRRDLDALEEQRKLKRVYGGAVKLTHFDGEPSY 74 +ILQ + GKV+ L ++L+VS+E+IRR L+ LE ++KLKRVYGGAVKLT EPS+ Sbjct: 11 IILQLINSNGKVRTNELVKKLQVSSESIRRYLEELEAEKKLKRVYGGAVKLTVERFEPSH 70 Query: 75 TMRRKLNQEGKQAIGREAARLLQDGDTVFMDTGTTVLEMTRWLAGKKNITIVTNXXXXXX 134 R L E K+ IGR AA L+QD DT+ +D GTT L+M +L KK++TI+T+ Sbjct: 71 IAREVLRAEEKKRIGRLAADLVQDSDTIVIDEGTTTLKMINFLVTKKDLTILTSSITALN 130 Query: 135 XXXXXXXXEQFTGKVILLGGEISVQQQSVSGILAHELLKQFTLDKAFLSVGGISPAQGIT 194 + LGG++S + VSG A +++KQF +DKAF++ GI +G+T Sbjct: 131 RLIEYQNNGMLAADIYFLGGKVSAKHHRVSGTYAEKMMKQFYVDKAFIAADGILLHKGLT 190 Query: 195 DYDMNESLVSRLAAGQASEVILLADHSKIG 224 Y+ + + ++R A+E I+LADHSKIG Sbjct: 191 CYEPDRTELARCFIENANESIVLADHSKIG 220 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,447,512,109 Number of extensions: 52616085 Number of successful extensions: 148718 Number of sequences better than 1.0e-05: 3782 Number of HSP's gapped: 143127 Number of HSP's successfully gapped: 3782 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)