BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0270.0001.p (237 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4BIJ1.1 B4BIJ1_9BACI Putative uncharacterized protein 156 1e-36 A4IL42.1 A4IL42_GEOTN Putative uncharacterized protein 156 2e-36 Q4MXL6.1 Q4MXL6_BACCE Putative uncharacterized protein 152 2e-35 B7JFC3.1 B7JFC3_BACC0 Putative membrane protein 152 2e-35 C3GLC9.1 C3GLC9_BACTU Putative uncharacterized protein 152 2e-35 >B4BIJ1.1 B4BIJ1_9BACI Putative uncharacterized protein Length = 242 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 130/240 (54%), Gaps = 9/240 (3%) Query: 2 KRFIPNQHGAWSMLVLPFLLGMAASQAKLLHIPLFLCWLLIYLFIFPLLQGVKTRRFDRY 61 K +P QHGAW+ML++PF LG A +H+PLF+ WL +YL +PLL VKT+R + Y Sbjct: 6 KWVMPKQHGAWAMLIIPFWLGAYAGGVSWIHVPLFIAWLALYLATYPLLMAVKTKRKEPY 65 Query: 62 GPPLKMYGLLLLPFAAYLIVTEPKXXXXXXXXXXXXXVNLYYARTKNERALLNDIAGILL 121 P YG + P A + P VN YY+R KNERA ND+A I Sbjct: 66 VPAAIRYGAIAAPALAVSLWQRPSLVFFGLAMIPFFLVNTYYSRKKNERAFWNDVAAIGA 125 Query: 122 FCLMVFPVFYIGGGTDWGIAGELFILALLYFVGTALYVKTIIREKNNPRYYYASVIYHGL 181 FC+ FY+G G A EL + + L+F+G+ YVKT+IREK N RY + S YH L Sbjct: 126 FCIGGLGAFYVGRGELTLEAFELAVFSFLFFIGSTFYVKTMIREKKNERYKWLSWGYHAL 185 Query: 182 FLLAGVV----LFPSLT-VPLIILLARAASLPKTKITAKRTGILEIGFSVMLYISVCVLY 236 L+AG++ F L P ++ RA L + + GILEI + +I++ VLY Sbjct: 186 -LVAGLIATGETFAVLAYAPSVV---RAVYLYGKALPIMKLGILEIANAAYFFIAMIVLY 241 >A4IL42.1 A4IL42_GEOTN Putative uncharacterized protein Length = 242 Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 95/240 (39%), Positives = 130/240 (54%), Gaps = 9/240 (3%) Query: 2 KRFIPNQHGAWSMLVLPFLLGMAASQAKLLHIPLFLCWLLIYLFIFPLLQGVKTRRFDRY 61 K +P QHGAW+ML++PF LG A +H+PLF+ WL +YL +PLL VKT+R + Y Sbjct: 6 KWVMPKQHGAWAMLIIPFWLGAYAGGVSWIHVPLFIAWLALYLATYPLLMAVKTKRKEPY 65 Query: 62 GPPLKMYGLLLLPFAAYLIVTEPKXXXXXXXXXXXXXVNLYYARTKNERALLNDIAGILL 121 P YG + P A + P VN YY+R KNERA ND+A I Sbjct: 66 VPAAIRYGAIAAPALAVSLWQRPSLVFFGLAMIPFFLVNTYYSRKKNERAFWNDVAAIGA 125 Query: 122 FCLMVFPVFYIGGGTDWGIAGELFILALLYFVGTALYVKTIIREKNNPRYYYASVIYHGL 181 FC+ FY+G G A EL + + L+F+G+ YVKT+IREK N RY + S YH L Sbjct: 126 FCIGGLGAFYVGCGELTLEAFELAVFSFLFFIGSTFYVKTMIREKKNERYKWLSWGYHAL 185 Query: 182 FLLAGVV----LFPSLT-VPLIILLARAASLPKTKITAKRTGILEIGFSVMLYISVCVLY 236 L+AG++ F L P ++ RA L + + GILEI + +I++ VLY Sbjct: 186 -LVAGLIATGETFAVLAYAPSVV---RAVYLYGKALPIMKLGILEIANAAYFFIAMIVLY 241 >Q4MXL6.1 Q4MXL6_BACCE Putative uncharacterized protein Length = 240 Score = 152 bits (385), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 90/226 (39%), Positives = 125/226 (55%) Query: 1 MKRFIPNQHGAWSMLVLPFLLGMAASQAKLLHIPLFLCWLLIYLFIFPLLQGVKTRRFDR 60 MK IP QHGAW+MLV+PFLL + + + HIPLFL W IYL +P L +K RR Sbjct: 1 MKLVIPKQHGAWAMLVIPFLLSVILGKPTMYHIPLFLAWFFIYLATYPFLTYIKQRRKRE 60 Query: 61 YGPPLKMYGLLLLPFAAYLIVTEPKXXXXXXXXXXXXXVNLYYARTKNERALLNDIAGIL 120 Y +Y L+ F ++ E + VN+YYAR KNERALLND++ I+ Sbjct: 61 YLHAAIVYFLIAFVFGMISLLYEWRILLFVIVMIPFFIVNMYYARQKNERALLNDVSAII 120 Query: 121 LFCLMVFPVFYIGGGTDWGIAGELFILALLYFVGTALYVKTIIREKNNPRYYYASVIYHG 180 +FC+ +Y A + +++ LYF+G+ YVKT+IREKNNP+Y Y S YH Sbjct: 121 VFCIGGLVSYYFSMKLIDKTALFIALISFLYFLGSTFYVKTMIREKNNPKYRYISWGYHI 180 Query: 181 LFLLAGVVLFPSLTVPLIILLARAASLPKTKITAKRTGILEIGFSV 226 + + + P ++ I + RA L KI+ + GILEI SV Sbjct: 181 MLTVIVFAINPWCSLIFIPSVIRAIILYGKKISIIKVGILEIVNSV 226 >B7JFC3.1 B7JFC3_BACC0 Putative membrane protein Length = 240 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 127/226 (56%) Query: 1 MKRFIPNQHGAWSMLVLPFLLGMAASQAKLLHIPLFLCWLLIYLFIFPLLQGVKTRRFDR 60 MK IP QHGAW+MLV+PFLL + + + HIPLF+ W IYL +P L +K +R Sbjct: 1 MKLVIPKQHGAWAMLVIPFLLSVILGKPTIYHIPLFIAWFFIYLATYPFLMYIKQKRKKE 60 Query: 61 YGPPLKMYGLLLLPFAAYLIVTEPKXXXXXXXXXXXXXVNLYYARTKNERALLNDIAGIL 120 Y +Y ++ F +++E + VN+YYAR KNERALLNDI+ I+ Sbjct: 61 YLHAAIVYFIIAFVFGMISLLSEWRILLFVAVMIPFFIVNMYYARQKNERALLNDISAII 120 Query: 121 LFCLMVFPVFYIGGGTDWGIAGELFILALLYFVGTALYVKTIIREKNNPRYYYASVIYHG 180 +FC+ +Y A + +++ LYF+G+ YVKT+IREKNNP+Y + S YH Sbjct: 121 VFCIGGLVSYYFSMKLIDKTALFIALISFLYFLGSTFYVKTMIREKNNPKYRFISWGYHI 180 Query: 181 LFLLAGVVLFPSLTVPLIILLARAASLPKTKITAKRTGILEIGFSV 226 L ++ + P ++ I + RA L KI+ + GILEI SV Sbjct: 181 LLMIIVFAINPWCSLIFIPSVIRAIILYGKKISIIKVGILEIVNSV 226 >C3GLC9.1 C3GLC9_BACTU Putative uncharacterized protein Length = 240 Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 88/226 (38%), Positives = 127/226 (56%) Query: 1 MKRFIPNQHGAWSMLVLPFLLGMAASQAKLLHIPLFLCWLLIYLFIFPLLQGVKTRRFDR 60 MK IP QHGAW+MLV+PFLL + + + HIPLF+ W IYL +P L +K +R Sbjct: 1 MKLVIPKQHGAWAMLVIPFLLSVILGKPTIYHIPLFIAWFFIYLATYPFLMYIKQKRKKE 60 Query: 61 YGPPLKMYGLLLLPFAAYLIVTEPKXXXXXXXXXXXXXVNLYYARTKNERALLNDIAGIL 120 Y +Y ++ F +++E + VN+YYAR KNERALLNDI+ I+ Sbjct: 61 YLHAAIVYFIIAFVFGMISLLSEWRILLFVAVMIPFFIVNMYYARQKNERALLNDISAII 120 Query: 121 LFCLMVFPVFYIGGGTDWGIAGELFILALLYFVGTALYVKTIIREKNNPRYYYASVIYHG 180 +FC+ +Y A + +++ LYF+G+ YVKT+IREKNNP+Y + S YH Sbjct: 121 VFCIGGLVSYYFSMKLIDKTALFIALISFLYFLGSTFYVKTMIREKNNPKYRFISWGYHI 180 Query: 181 LFLLAGVVLFPSLTVPLIILLARAASLPKTKITAKRTGILEIGFSV 226 L ++ + P ++ I + RA L KI+ + GILEI SV Sbjct: 181 LLMIIVFAINPWCSLIFIPSVIRAIILYGKKISIIKVGILEIVNSV 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.333 0.149 0.467 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,307,697,298 Number of extensions: 49946960 Number of successful extensions: 159503 Number of sequences better than 1.0e-05: 141 Number of HSP's gapped: 159255 Number of HSP's successfully gapped: 141 Length of query: 237 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 105 Effective length of database: 1,817,122,223 Effective search space: 190797833415 Effective search space used: 190797833415 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 129 (54.3 bits)