BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0013.p (310 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1LA37.1 B1LA37_THESQ Periplasmic binding protein/LacI transcrip... 114 1e-23 A5IKV6.1 A5IKV6_THEP1 Periplasmic binding protein/LacI transcrip... 114 1e-23 B7RDW0.1 B7RDW0_9THEM Sugar ABC transporter, periplasmic sugar-b... 114 1e-23 B9K719.1 B9K719_THENN Sugar ABC transporter, periplasmic sugar-b... 112 4e-23 Q9WXW9.1 Q9WXW9_THEMA Sugar ABC transporter, periplasmic sugar-b... 110 1e-22 >B1LA37.1 B1LA37_THESQ Periplasmic binding protein/LacI transcriptional regulator Length = 323 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GVDGI Sbjct: 20 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVDGI 79 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPVV ++DSP S R YIG DN G G ++ LL Sbjct: 80 AIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 139 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + + ++I++++I +++ RA E ++ H Sbjct: 140 GKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAH 198 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + S LV K G K + TP + Q V+ G I + Q Sbjct: 199 PDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 258 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 259 MGYLSVTVLYLMNK 272 >A5IKV6.1 A5IKV6_THEP1 Periplasmic binding protein/LacI transcriptional regulator Length = 323 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GVDGI Sbjct: 20 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVDGI 79 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPVV ++DSP S R YIG DN G G ++ LL Sbjct: 80 AIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 139 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + + ++I++++I +++ RA E ++ H Sbjct: 140 GKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAH 198 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + S LV K G K + TP + Q V+ G I + Q Sbjct: 199 PDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 258 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 259 MGYLSVTVLYLMNK 272 >B7RDW0.1 B7RDW0_9THEM Sugar ABC transporter, periplasmic sugar-binding protein Length = 323 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 123/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GVDGI Sbjct: 20 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVDGI 79 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPVV ++DSP S R YIG DN G G ++ LL Sbjct: 80 AIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 139 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + + ++I++++I +++ RA E ++ H Sbjct: 140 GKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAH 198 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + S LV K G K + TP + Q V+ G I + Q Sbjct: 199 PDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 258 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 259 MGYLSVTVLYLMNK 272 >B9K719.1 B9K719_THENN Sugar ABC transporter, periplasmic sugar-binding protein Length = 323 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 74/254 (29%), Positives = 122/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GVDGI Sbjct: 20 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVDGI 79 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPV+ ++DSP S R YIG DN G G ++ LL Sbjct: 80 AIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 139 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + ++I++++I +++ RA E ++ H Sbjct: 140 GKGKVVIGTGSLTAMNSLQRIQGFKDAIAD-SEIEIVDILNDEEDGARAVSLAEAALNAH 198 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + S LV K G K + TP + Q V+ G I + Q Sbjct: 199 PDLDAFFGVYAYNGPSQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 258 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 259 MGYLSVTVLYLMNK 272 >Q9WXW9.1 Q9WXW9_THEMA Sugar ABC transporter, periplasmic sugar-binding protein Length = 335 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 73/254 (28%), Positives = 123/254 (48%), Gaps = 3/254 (1%) Query: 42 LTFGIIYPMVNATYEMITGKAEAVARKHNVELLVQAPDEANLEQQIRIMEMMIKRGVDGI 101 LT G+I V+ + + +A + V+ P + ++ Q++++E I GV+GI Sbjct: 32 LTIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGI 91 Query: 102 AIAPVDSQALTAMINKAAAQGIPVVCFESDSPASRRAAYIGADNRATGAVMGQTVERLLS 161 AIAP D A+ I KA GIPVV ++DSP S R YIG DN G G ++ LL Sbjct: 92 AIAPSDPTAVIPTIKKALEMGIPVVTLDTDSPDSGRYVYIGTDNYQAGYTAGLIMKELLG 151 Query: 162 GKGMILVESGMSRMQSTRERLLGLEAYLTQHTDIDVLEIRHNDGSEERAAGQLEQMISDH 221 GKG +++ +G ++ +R+ G + + + ++I++++I +++ RA E ++ H Sbjct: 152 GKGKVVIGTGSLTAMNSLQRIQGFKDAI-KDSEIEIVDILNDEEDGARAVSLAEAALNAH 210 Query: 222 PHFSALVNLDFVSSTSSVLVWKAKGL--KRYNLALGLTPALQQAVENGQITRVISQNEQN 279 P A + + + LV K G K + TP + Q V+ G I + Q Sbjct: 211 PDLDAFFGVYAYNGPAQALVVKNAGKVGKVKIVCFDTTPDILQYVKEGVIQATMGQRPYM 270 Query: 280 WGEDIINTLLLQAK 293 G + L L K Sbjct: 271 MGYLSVTVLYLMNK 284 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.130 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,610,201,127 Number of extensions: 61193244 Number of successful extensions: 186074 Number of sequences better than 1.0e-05: 1089 Number of HSP's gapped: 186765 Number of HSP's successfully gapped: 1090 Length of query: 310 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 175 Effective length of database: 1,788,859,178 Effective search space: 313050356150 Effective search space used: 313050356150 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)