BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0012.p (533 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8I0K9.1 B8I0K9_CLOCE Two component transcriptional regulator, A... 285 7e-75 A8RZE9.1 A8RZE9_9CLOT Putative uncharacterized protein 283 2e-74 B0NX83.1 B0NX83_9CLOT Putative uncharacterized protein 281 1e-73 C5EPF6.1 C5EPF6_9FIRM Two component transcriptional regulator 272 8e-71 B6FKZ8.1 B6FKZ8_9CLOT Putative uncharacterized protein 258 1e-66 >B8I0K9.1 B8I0K9_CLOCE Two component transcriptional regulator, AraC family Length = 532 Score = 285 bits (730), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 176/539 (32%), Positives = 275/539 (51%), Gaps = 30/539 (5%) Query: 2 MKKIMLVDDEILIRENIRECIDWEKEGFHYCGDAPDGELALPIIEAQLPDILITDIKMPF 61 M KI LVDDE+++R IR+CI+WE+ F + G+APDGE ALP+I PDILITDIKMPF Sbjct: 1 MYKIFLVDDEVVVRHGIRDCINWEQTDFVFSGEAPDGEFALPLILEIKPDILITDIKMPF 60 Query: 62 MNGLELTSVVRQKFPQIKIIILSGHDDFQYAQKALRLGVEDYCLKPFSAADLLQLLRSVS 121 M+GLEL+ ++R+ P +KIIILSGHD+F +A++A+R+GV +Y LKP +A DLL+ L V Sbjct: 61 MDGLELSQIIRKNMPWVKIIILSGHDEFGFAREAMRIGVTEYLLKPVTADDLLKSLEKVK 120 Query: 122 ARIDEELRIRHKYAYTPENL-----------FADLCGGLISTAAAYESAAQLELQLTAPY 170 A I +E + R + L ++L GL+ ++ +L + + + + Sbjct: 121 ALIIDEKKERENAEKIKKQLADNAPLFKDKFLSELLLGLVPPVEVIDNCEKLNINIISKF 180 Query: 171 YAAAIFTLHPLNIXXXXXXXXXXXXXXXXXXXXXXXXXDSFIYKRSRTETVLIYKGTDPV 230 Y I L + ++R E +LI KG + Sbjct: 181 YIVEIIELERTKKDVPDGEYTEVLQAETLIDNIVVKNSEIIKFRRILGEIILIIKGDNAK 240 Query: 231 QMNQALDELCAAAKQRLREVCGLELSVSRGKVCERLQGIHLSYLEAENDRMFKQM-SRMH 289 M + L + K + L ++ G V ER+QGI SY EAE + ++ + + Sbjct: 241 SMEETAYSLAQSLKYEVERKTSCILGINIGGVRERIQGIMQSYKEAEEIKNYRYLYGKRK 300 Query: 290 SAAMLEVYYDPSA--NGVLLDRSRLVQFLKSGDHRQMSDFLLELSTELERMNWNSG-YAC 346 + ++ D + + + + + FLK G + F+ + L + S Y Sbjct: 301 ILGINDIKSDMGSKKDFIKIYMNSPYDFLKCGLKSDVRYFVNDYIDNLNDIEMKSPIYIH 360 Query: 347 YLMNDITLELVQTAKNGFRAAAGHAGILQELQTQLKQISSSDDGLQYLKRLYE------- 399 YL D+ + N R G +++L + + S G+ +++ E Sbjct: 361 YLFMDVVI-------NAVRFIDELGGEIEKLIPWVANLESFVAGIDSIEKFGELTELTLN 413 Query: 400 RLWEWRSEGAD-KHRELIDRVKQYIREQYDKEQLSLNDISKVVRVSPSHLSKTFSQATGQ 458 ++ E+R + K+ +I++ K+YI+ + +SLN +S V VSPSH S FSQ G+ Sbjct: 414 KILEFRDTRVEKKYDSIINKAKEYIQSNFSNSAISLNSVSSYVNVSPSHFSTIFSQEAGE 473 Query: 459 TITEFLTATRMDRAKELLKSTGHKTFEIAYLVGYNDQHYFSNLFKKVTGMTPMEFRKQG 517 E+LT R+ +A ELLK+T K+ EIAY VGYND HYF +FKK G+TP E+R + Sbjct: 474 NFIEYLTKVRVKKAMELLKTTSLKSSEIAYSVGYNDPHYFCYIFKKAIGVTPKEYRSEA 532 >A8RZE9.1 A8RZE9_9CLOT Putative uncharacterized protein Length = 567 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 186/540 (34%), Positives = 279/540 (51%), Gaps = 30/540 (5%) Query: 1 VMKKIMLVDDEILIRENIRECIDWEKEGFHYCGDAPDGELALPIIEAQLPDILITDIKMP 60 +M K+ LV+DEI++R I+ I WEKEG + G+A DGELA P+I PDILITDI+MP Sbjct: 25 IMIKVFLVEDEIVMRNGIKNNIPWEKEGLEFAGEASDGELAYPLIRKVQPDILITDIRMP 84 Query: 61 FMNGLELTSVVRQKFPQIKIIILSGHDDFQYAQKALRLGVEDYCLKPFSAADLLQLLRSV 120 FM+GLEL+ +V+++FP+IKIIILSG+++F YA++A+ +GV DY LKP +AA LL+ ++ V Sbjct: 85 FMDGLELSELVKKEFPRIKIIILSGYNEFDYAKQAIHIGVTDYLLKPITAAKLLEAVKKV 144 Query: 121 SARID---EELRIRHKY--------AYTPENLFADLCGGLISTAAAYESAAQLELQLTAP 169 + I+ E+ R+ KY + L DL G ++ A E Q+ + L+A Sbjct: 145 ADVIEKEREDARLMDKYRLEMAENTVLERQRLLRDLVTGRVNFKEALERGEQVGMDLSAS 204 Query: 170 YYAAAIFTLHPLNIXXXXXXXXXXXXXXXXXXXXXXXXXDSFIYKRSRTETVLIYKGTDP 229 +Y +F L P+ ++ R + G Sbjct: 205 FYQLMLFKLMPMG--SAVAYSDRVVSCQEAIEERMEGRQHILVFDRGDEGWAFVLTGESE 262 Query: 230 VQMNQALDELCAAAKQRLREVC-GLELSVSRGKVCERLQGIHLSYLEAEN---DRMFKQM 285 ++ + + E CAA+ ++ C ++ G RL + SYL+A R F +M Sbjct: 263 QEVERRMSE-CAASLGKMAGACKDIQYFGGIGSCVNRLGDLQTSYLQAGRAFAARFFTEM 321 Query: 286 SRMHSAAML--------EVYYDPSANGVLLDRSRLVQFLKSGDHRQMSDFLLELSTELER 337 +R+ S + + E S + ++R L FLK G + S F+ E + Sbjct: 322 NRIISYSQMDGMVHGTGETIDINSVDASKVNRKTLENFLKQGTVGEASGFVEEYFQNVGE 381 Query: 338 MNWNS-GYACYLMNDITLELVQTAKNGFRAAAGH-AGILQELQTQLKQISSSDDGLQYLK 395 N S + Y++ D L V T G L +++ LK + D + L Sbjct: 382 KNCQSFMFRQYIVMDCYL-CVSTFLEQLGLDMGRLPRELSDMEKVLKDGCALDMLKEKLV 440 Query: 396 RLYERLWEWR-SEGADKHRELIDRVKQYIREQYDKEQLSLNDISKVVRVSPSHLSKTFSQ 454 RL+E + R S+ A K+ +++D K +I + Y KE++SLN ++ V +SPS+ S FSQ Sbjct: 441 RLFEEVMTLRDSQTASKYSQVLDEAKAFIYDNYAKEEISLNTVAARVNISPSYFSSIFSQ 500 Query: 455 ATGQTITEFLTATRMDRAKELLKSTGHKTFEIAYLVGYNDQHYFSNLFKKVTGMTPMEFR 514 G T EFLT RM++AKELL + KT EI Y VGY D HYF LFKK G TP E+R Sbjct: 501 EMGVTFVEFLTGVRMEKAKELLMCSNLKTSEIGYEVGYKDSHYFGYLFKKTVGCTPKEYR 560 >B0NX83.1 B0NX83_9CLOT Putative uncharacterized protein Length = 539 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 172/539 (31%), Positives = 279/539 (51%), Gaps = 30/539 (5%) Query: 2 MKKIMLVDDEILIRENIRECIDWEKEGFHYCGDAPDGELALPIIEAQLPDILITDIKMPF 61 M K+ LV+DE +IR++I+ + WE+ GF + G+APDGE+ALP+IE PDI+ITDIKMPF Sbjct: 1 MIKVFLVEDEKIIRKSIKNNVKWEENGFEFAGEAPDGEMALPMIEKLHPDIVITDIKMPF 60 Query: 62 MNGLELTSVVRQKFPQIKIIILSGHDDFQYAQKALRLGVEDYCLKPFSAADLLQLLR--- 118 M+GLEL+ ++++K P+I+IIILSG+ +F YA++A+++GV DY KP + LL+ L Sbjct: 61 MDGLELSDILKKKMPKIQIIILSGYGEFDYAKEAIKIGVTDYLTKPVTGEQLLEALNKVK 120 Query: 119 ---SVSARIDEELR-----IRHKYAYTPENLFADLCGGLISTAAAYESAAQLELQLTAPY 170 R +E+++ I+ + F +L G IS + E +L + L AP Sbjct: 121 QKLDKKKRQEEDIKKLQKNIKTQMKNMRYQFFGNLIRGKISVSKLMEQGNELGIDLMAPA 180 Query: 171 YAAAIFTLHPLNIXXXXXXXXXXXXXXXXXXXXXXXXXDSFIYKRSRTETVLIYKGTDPV 230 Y +F + N + ++ R VL+ K + Sbjct: 181 YNFMLFKIFSKNENDTEAVYDLRTKEDAIVEEVSSQFENMIVFHRVTEGYVLMIKAQNTE 240 Query: 231 QMNQALDELCAAAKQRLREVCGLELSVSRGKVCERLQGIHLSYLEAENDRMFKQMSRMHS 290 + Q + AA +R+++ L+ G ERL + SY A ++ S + Sbjct: 241 ETIQVAKDYVAALTKRMKKEKELQWFAGIGHAVERLHNLSESYDSASKAFAYQYQSSGNE 300 Query: 291 AAMLEVYYDPSANGVL-------------LDRSRLVQFLKSGDHRQMSDFLLELSTELER 337 A V++D N + ++ L +FLK+G + F+ + + L + Sbjct: 301 A----VFFDKLDNEKIERAEDLQQVDFTKVNSESLEEFLKNGKEEAVHLFVEDYTKTLGK 356 Query: 338 MNWNSGYAC-YLMNDITLELVQTAKNGFRAAAGHAGILQELQTQLKQISSSDDGLQYLKR 396 N +S C Y++ +I + +++ + A ++ + Q+ +S+ + +Y++ Sbjct: 357 SNMDSFMFCQYMLINIQVGVMKFVEKMGVEKANIDRTFKDYKQQIAAVSTGEKAAEYIEE 416 Query: 397 LYERLWEWRSEG-ADKHRELIDRVKQYIREQYDKEQLSLNDISKVVRVSPSHLSKTFSQA 455 L + R+E KH LI K++I + Y +E LSL+D++ V +S SH S TF Q Sbjct: 417 LIIQAIRMRNERLGKKHSSLITEAKEFIVKNYQEETLSLSDVADQVGLSSSHFSTTFKQE 476 Query: 456 TGQTITEFLTATRMDRAKELLKSTGHKTFEIAYLVGYNDQHYFSNLFKKVTGMTPMEFR 514 TG++ EFLT+ RMD+AKE+L T K +I+Y VGY D HYFS LFKK G TP E+R Sbjct: 477 TGESFVEFLTSVRMDKAKEMLCFTDMKASQISYEVGYKDPHYFSYLFKKTQGCTPSEYR 535 >C5EPF6.1 C5EPF6_9FIRM Two component transcriptional regulator Length = 550 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 180/544 (33%), Positives = 274/544 (50%), Gaps = 38/544 (6%) Query: 1 VMKKIMLVDDEILIRENIRECIDWEKEGFHYCGDAPDGELALPIIEAQLPDILITDIKMP 60 VM K+ LV+DE+++R I+ I WEKEG + G+A DGELA P+I+ PDILITDI+MP Sbjct: 8 VMIKVFLVEDEVVMRNGIKNNIPWEKEGLMFAGEASDGELAYPMIKKAQPDILITDIRMP 67 Query: 61 FMNGLELTSVVRQKFPQIKIIILSGHDDFQYAQKALRLGVEDYCLKPFSAADLLQLLRSV 120 FM+GLEL+ +V+++FP+IKIIILSG+++F YA++A+ +GV DY LKP +A+ LL+ ++ V Sbjct: 68 FMDGLELSELVKKEFPKIKIIILSGYNEFDYAKQAIHIGVTDYLLKPITASKLLEAVKKV 127 Query: 121 SARIDEE-----------LRIRHKYAYTPENLFADLCGGLISTAAAYESAAQLELQLTAP 169 + I++E L + + LF DL I+ A+E +L L+L+A Sbjct: 128 ADVIEKEREEEGMLERYRLEMAENTVLERQRLFKDLVTSRINFKEAFERGEELGLELSAS 187 Query: 170 YYAAAIFTLHPLNIXXXXXXXXXXXXXXXXXXXXXXXXXDSFIYKRSRTETVLIYKGTDP 229 +Y +F L P ++ R I G Sbjct: 188 FYQLMLFKLIPSG--PSSIWSDMVVSCQEAIEEHMEGRSHILVFDRGDEGWAFILTGESE 245 Query: 230 VQMNQALDELCAAAKQRLREVCGLELSVSRGKVCERLQGIHLSYLEAEND---RMFKQMS 286 ++ + + E + + ++ S G RL + SY +A R F +M+ Sbjct: 246 QEVGRRMKECAVRLGELVHTYRDIQYFGSIGSCVNRLGDLQQSYQQASQAFACRFFSEMN 305 Query: 287 RMHSAAMLEVYYDP--------SANGVLLDRSRLVQFLKSGDHRQMSDFLLELSTELERM 338 ++ + +E + S +G ++R L FLK G + F+ E + Sbjct: 306 QVVDYSQMEQMFSATGEPIDIHSVDGSKVNRKTLENFLKQGTSEEARGFVEEYFQNVGEK 365 Query: 339 NWNSGYA-------CYLMNDITLELVQTAKNGFRAAAGHAGILQELQTQLKQISSSDDGL 391 N+ S CYL LE + + + G A ++ LK+ S Sbjct: 366 NYQSFMFRQYIIMDCYLCVRTFLE--ELGMDMLKLPEGVA----DMDMVLKESHSITALK 419 Query: 392 QYLKRLYERLWEWR-SEGADKHRELIDRVKQYIREQYDKEQLSLNDISKVVRVSPSHLSK 450 + L RL+E R S+ A K+ ++++ + +IRE Y KE++SLN ++ V +SPS+ S Sbjct: 420 ESLIRLFEGTMLLRDSQTASKYSQVLEEARAFIRENYAKEEISLNTVAARVNISPSYFSS 479 Query: 451 TFSQATGQTITEFLTATRMDRAKELLKSTGHKTFEIAYLVGYNDQHYFSNLFKKVTGMTP 510 FSQ G T E+LT RM+RAKELL + KT EI Y VGY D HYF LFKK G TP Sbjct: 480 IFSQEMGVTFVEYLTGVRMERAKELLMCSNMKTTEIGYEVGYKDSHYFGYLFKKTVGCTP 539 Query: 511 MEFR 514 E+R Sbjct: 540 KEYR 543 >B6FKZ8.1 B6FKZ8_9CLOT Putative uncharacterized protein Length = 540 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 174/543 (32%), Positives = 272/543 (50%), Gaps = 37/543 (6%) Query: 4 KIMLVDDEILIRENIRECIDWEKEGFHYCGDAPDGELALPIIEAQLPDILITDIKMPFMN 63 K+ LV+DE++IR +++ I+WE+EG+ + G+A DGELA P+I + PDILITDI+MPFM+ Sbjct: 6 KVFLVEDEVIIRSGVKKSINWEQEGYEFVGEASDGELAYPMILKEKPDILITDIRMPFMD 65 Query: 64 GLELTSVVRQKFPQIKIIILSGHDDFQYAQKALRLGVEDYCLKPFSAADLLQLLRSVSAR 123 GLEL+ +V+++ P IKI+ILSG+D+F+YA+KA+++GV +Y LKP SAA L ++L +V+ Sbjct: 66 GLELSRLVKKELPDIKILILSGYDEFEYAKKAIKIGVTEYLLKPISAAKLTEVLNAVAET 125 Query: 124 I---DEELRIRHKY-AYTPEN-------LFADLCGGLISTAAAYESAAQLELQLTAPYYA 172 I +EE + Y A EN LF L G +S E+ + + L A Y Sbjct: 126 IRQENEEKNLLETYFAEMRENTERDKMRLFEKLLMGDLSMGEILEAGERFGMNLGASCYK 185 Query: 173 AAIFTLHPLNIXXXXXXXXXXXXXXXXXXXXXXXXXDSFIYKRSRTETVLIYKGTDPVQM 232 +F + L ++++R + D M Sbjct: 186 IVLFKI--LANLENHVYAEQMVDACSSVEQAASMMEGVYVFQRGVEGWAFLLTAQDEKSM 243 Query: 233 NQALDELCAAAKQRLREVCGLELSVSRGKVCERLQGIHLSYLEAENDRMFK--------- 283 ++ L KQ ++ LE G R++ + S+ EA DR F Sbjct: 244 EESAKILYQNLKQAMKNYTQLEYFGGIGSTVPRIRSLKQSFREA--DRAFAARFVEEANQ 301 Query: 284 --QMSRMHSAAMLEVYYDPSANGVLLDRSRLVQFLKSGDHRQMSDFLLELSTELERMNWN 341 + M E + R L +FL +G ++ F + +E N Sbjct: 302 IISQKEFEKSQMEEGLKMQGVVQIGKPREMLQKFLSNGTREEVKAFSDAYISRIEEENIR 361 Query: 342 SGYA-CYLMNDITLELVQTAKNGFRAAAGHAGILQ----ELQTQLKQISSSDDGLQYLKR 396 S Y++ D+ + ++ F A LQ ELQ +++I S + +Y+ R Sbjct: 362 STMVRQYVVIDVCIVIL-----SFCERISSANRLQEEAEELQKMMQKIHSLSEIKKYVVR 416 Query: 397 LYERLWEWR-SEGADKHRELIDRVKQYIREQYDKEQLSLNDISKVVRVSPSHLSKTFSQA 455 L E R +E ++ +LI K+ I Y E++SLN ++ V +SPS+ S FS+ Sbjct: 417 LLNEAIELRDAESGRRYSDLIAAAKKEIENHYMTEEISLNTVAISVGMSPSYFSSIFSKE 476 Query: 456 TGQTITEFLTATRMDRAKELLKSTGHKTFEIAYLVGYNDQHYFSNLFKKVTGMTPMEFRK 515 G+T E+LT R+++AKE L + KT EI Y VGY D HYFS +FKKV G +P E+R Sbjct: 477 AGKTFVEYLTEVRIEKAKEFLMCSSMKTSEIGYEVGYKDPHYFSYIFKKVQGCSPKEYRA 536 Query: 516 QGQ 518 +G+ Sbjct: 537 RGK 539 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,842,874,856 Number of extensions: 108107492 Number of successful extensions: 400030 Number of sequences better than 1.0e-05: 16832 Number of HSP's gapped: 411873 Number of HSP's successfully gapped: 17598 Length of query: 533 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 392 Effective length of database: 1,732,333,088 Effective search space: 679074570496 Effective search space used: 679074570496 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)