BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0010.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4EH34.1 C4EH34_STRRS Monosaccharide ABC transporter substrate-b... 479 e-133 C0T350.1 C0T350_9PSEU Monosaccharide ABC transporter substrate-b... 421 e-116 A1TPE5.1 A1TPE5_ACIAC Periplasmic binding protein/LacI transcrip... 417 e-115 C5CPH4.1 C5CPH4_VARPD Periplasmic binding protein/LacI transcrip... 414 e-114 C4REW8.1 C4REW8_9ACTO ABC transporter periplasmic-binding protei... 410 e-113 >C4EH34.1 C4EH34_STRRS Monosaccharide ABC transporter substrate-binding protein, CUT2 family Length = 325 Score = 479 bits (1232), Expect = e-133, Method: Compositional matrix adjust. Identities = 231/290 (79%), Positives = 255/290 (87%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVI 116 IT+GFSQVGAESGWR+ANTKS+Q +A+ AG TLKFSDAQQKQENQIKA+RS+IQQKVDVI Sbjct: 36 ITMGFSQVGAESGWRTANTKSVQTAAEAAGVTLKFSDAQQKQENQIKAIRSYIQQKVDVI 95 Query: 117 SFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTE 176 +FSPVVESGWDTVLKEAK A IPV+LTDRAVDSKDTSLY TFLGSDFVEEGRKAGKWLTE Sbjct: 96 AFSPVVESGWDTVLKEAKNAAIPVILTDRAVDSKDTSLYKTFLGSDFVEEGRKAGKWLTE 155 Query: 177 QYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQ 236 ++KD + VNIVELQGTTGSAPANDR AGFAE I +P KVIASQTGDFTRAKGKEVM+ Sbjct: 156 EFKDTKDPVNIVELQGTTGSAPANDRKAGFAEAIGTDPKFKVIASQTGDFTRAKGKEVME 215 Query: 237 AFLKANKDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKINF 296 AFLKAN DIDVLYAHNDDM LGAI+AIE AG PG+DIKII++DAVKDGMQA ++GKI++ Sbjct: 216 AFLKANPDIDVLYAHNDDMGLGAIEAIEGAGKVPGKDIKIITIDAVKDGMQALADGKISY 275 Query: 297 IVECNPLLGPQLMXXXXXXXXXXXXEARIVTEETTFTSEQAKEALPSRQY 346 IVEC+PLLGPQLM AR+VTEETTFT EQAKEALPSRQY Sbjct: 276 IVECSPLLGPQLMDLAAKAVKGESIPARVVTEETTFTQEQAKEALPSRQY 325 >C0T350.1 C0T350_9PSEU Monosaccharide ABC transporter substrate-binding protein, CUT2 family Length = 326 Score = 421 bits (1083), Expect = e-116, Method: Compositional matrix adjust. Identities = 205/290 (70%), Positives = 241/290 (83%), Gaps = 3/290 (1%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVI 116 +T+GF+QVGAESGWR+ANTKS+Q++A AG LKFSDAQQKQENQ+KA+RS+IQQKVDVI Sbjct: 40 LTMGFAQVGAESGWRTANTKSVQEAAAAAGVDLKFSDAQQKQENQLKAIRSYIQQKVDVI 99 Query: 117 SFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTE 176 +FSPVVE+GWDTVL EAK A IPV+LTDRAVDS+DTSLY TFLGSDFVEEGRKAG WL Sbjct: 100 AFSPVVETGWDTVLLEAKRANIPVILTDRAVDSEDTSLYKTFLGSDFVEEGRKAGDWLVA 159 Query: 177 QYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQ 236 + +VN+ ELQGTTG+APA DR AGF E I ++KV+ASQTGDFTR+ GK+VM+ Sbjct: 160 NVQG---EVNVAELQGTTGAAPAIDRKAGFEEKIAGKSNIKVVASQTGDFTRSGGKQVME 216 Query: 237 AFLKANKDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKINF 296 AFLK+N +I+V+YAHNDDM LGAI+AI+AAG KPG+DIKII+VDAVKDGM A + G+INF Sbjct: 217 AFLKSNPEINVVYAHNDDMGLGAIEAIKAAGKKPGEDIKIITVDAVKDGMTALAGGEINF 276 Query: 297 IVECNPLLGPQLMXXXXXXXXXXXXEARIVTEETTFTSEQAKEALPSRQY 346 IVECNPLLG QLM AR+VTEETTFTSEQAK ALP R+Y Sbjct: 277 IVECNPLLGEQLMDLAKKVVAGEEIPARVVTEETTFTSEQAKAALPDRKY 326 >A1TPE5.1 A1TPE5_ACIAC Periplasmic binding protein/LacI transcriptional regulator Length = 322 Score = 417 bits (1072), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/291 (70%), Positives = 234/291 (80%), Gaps = 1/291 (0%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVI 116 I LGFSQVGAES WR+ANT+SI+ +A++AG LKFSDAQQKQENQIKA+RSFI Q+VDVI Sbjct: 32 IVLGFSQVGAESEWRTANTESIKSAARDAGIELKFSDAQQKQENQIKAIRSFIAQRVDVI 91 Query: 117 SFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTE 176 +FSPVVESGW+ VL+EAKAA IPVVLTDRAV++KDTSLYVTF+GSDFVEEGRKAG+WL E Sbjct: 92 AFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLYVTFMGSDFVEEGRKAGRWLVE 151 Query: 177 QYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQ 236 + KDA DVNIVELQGT GSAPA DR GF EV+K +P K+I SQTGDFTRAKGKEVM+ Sbjct: 152 KMKDAKGDVNIVELQGTVGSAPAIDRKKGFEEVVKADPKFKIIRSQTGDFTRAKGKEVME 211 Query: 237 AFLKAN-KDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKIN 295 AFLKA + I+VLYAHNDDMA+GAIQAIE AGLKPG+DI IIS+DAVK +A GK+N Sbjct: 212 AFLKAEGRKINVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMAGKLN 271 Query: 296 FIVECNPLLGPQLMXXXXXXXXXXXXEARIVTEETTFTSEQAKEALPSRQY 346 VEC+PLLGPQLM RIVTEE F E A + P R+Y Sbjct: 272 VTVECSPLLGPQLMAAVKDIKAGKTVPKRIVTEEGIFPMETAAQEFPKRKY 322 >C5CPH4.1 C5CPH4_VARPD Periplasmic binding protein/LacI transcriptional regulator Length = 321 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 205/291 (70%), Positives = 234/291 (80%), Gaps = 1/291 (0%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVI 116 I LGFSQVGAES WR+ANT+SI+ SAKEAG LKFSDAQQKQENQIKA+RSFI QKVDVI Sbjct: 31 IVLGFSQVGAESEWRTANTESIKASAKEAGIELKFSDAQQKQENQIKAIRSFIAQKVDVI 90 Query: 117 SFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTE 176 +FSPVVESGW+TVL+EAKAA IPVVLTDR+V++KD SLYVTF+GSDFVEEGRKAG+WL E Sbjct: 91 AFSPVVESGWETVLREAKAAKIPVVLTDRSVNTKDDSLYVTFMGSDFVEEGRKAGRWLVE 150 Query: 177 QYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQ 236 + KD +VNIVELQGT GSAPA DR GF E+IK +P K++ SQTGDFTRAKGKEVM+ Sbjct: 151 KMKDQKGEVNIVELQGTVGSAPAIDRKKGFEEIIKADPKFKILRSQTGDFTRAKGKEVME 210 Query: 237 AFLKAN-KDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKIN 295 AFLKA K I+VLYAHNDDMA+GAIQAIE AGLKP +DI IIS+DAVK +A GK+N Sbjct: 211 AFLKAEGKKINVLYAHNDDMAIGAIQAIEEAGLKPAKDITIISIDAVKGAFEAMIAGKLN 270 Query: 296 FIVECNPLLGPQLMXXXXXXXXXXXXEARIVTEETTFTSEQAKEALPSRQY 346 VEC+PLLGPQLM RIVTEET F E A + P+R+Y Sbjct: 271 VSVECSPLLGPQLMSAVKDIKAGKQLPKRIVTEETIFPMEVAAKEFPNRKY 321 >C4REW8.1 C4REW8_9ACTO ABC transporter periplasmic-binding protein ytfQ Length = 332 Score = 410 bits (1055), Expect = e-113, Method: Compositional matrix adjust. Identities = 201/290 (69%), Positives = 233/290 (80%) Query: 57 ITLGFSQVGAESGWRSANTKSIQDSAKEAGYTLKFSDAQQKQENQIKALRSFIQQKVDVI 116 I LGFSQ+GAESGWR+ANT SI++SA AG LKF DAQ KQENQIKA+R+FIQQKVDVI Sbjct: 43 IVLGFSQIGAESGWRTANTNSIKESAAAAGIELKFDDAQGKQENQIKAIRNFIQQKVDVI 102 Query: 117 SFSPVVESGWDTVLKEAKAAGIPVVLTDRAVDSKDTSLYVTFLGSDFVEEGRKAGKWLTE 176 +FSP+ ESGWDTVLKEAK A IPV+LTDRAVDS D SLY +FLGSDFV+EGR AG+WL E Sbjct: 103 AFSPIKESGWDTVLKEAKDAKIPVILTDRAVDSADKSLYKSFLGSDFVKEGRLAGEWLVE 162 Query: 177 QYKDASEDVNIVELQGTTGSAPANDRMAGFAEVIKDNPHLKVIASQTGDFTRAKGKEVMQ 236 Q K A+ VNIVELQGTTGSAPA DR GFA I NP+LK++ASQ+GDFTRA GK+VM+ Sbjct: 163 QKKTATGPVNIVELQGTTGSAPAIDRKEGFATAIAANPNLKIVASQSGDFTRAGGKQVME 222 Query: 237 AFLKANKDIDVLYAHNDDMALGAIQAIEAAGLKPGQDIKIISVDAVKDGMQAASEGKINF 296 FLKAN IDVL+AHNDDM LGA++AI AAG PG+DI II++DAVKDGMQA ++GK NF Sbjct: 223 QFLKANPKIDVLFAHNDDMGLGALEAITAAGKVPGKDITIITIDAVKDGMQALADGKFNF 282 Query: 297 IVECNPLLGPQLMXXXXXXXXXXXXEARIVTEETTFTSEQAKEALPSRQY 346 I EC+PLLG QLM AR+ T+E TFT EQAK ALP+R+Y Sbjct: 283 IAECSPLLGDQLMDLVKKVKAGEEVPARVETQEGTFTQEQAKAALPTRKY 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.129 0.354 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,566,682,589 Number of extensions: 57464312 Number of successful extensions: 166365 Number of sequences better than 1.0e-05: 2857 Number of HSP's gapped: 164269 Number of HSP's successfully gapped: 2858 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 131 (55.1 bits)