BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0007.p (209 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4EH32.1 C4EH32_STRRS Monosaccharide ABC transporter membrane pr... 184 6e-45 Q08PR2.1 Q08PR2_STIAU ABC transporter, membrane spanning protein... 182 2e-44 A9GMP0.1 A9GMP0_SORC5 Put.Ribose/xylose/arabinose/galactoside AB... 173 7e-42 A1TPE0.1 A1TPE0_ACIAC Inner-membrane translocator 173 1e-41 B5HW82.1 B5HW82_9ACTO Ribose transport system permease protein 172 2e-41 >C4EH32.1 C4EH32_STRRS Monosaccharide ABC transporter membrane protein, CUT2 family Length = 348 Score = 184 bits (466), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 120/205 (58%), Gaps = 2/205 (0%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRG+AQLIT GQIITV S Y IG G LPF I Sbjct: 138 MVAGRGLAQLITDGQIITVNSGPYKLIGGGYWLTLPFGILIVLAVLALTAALTRRLALGL 197 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 IESVG N AS+++GIR+ VI+AVY F SSNVSSADGNNAGLW ELD Sbjct: 198 LIESVGGNAEASRLAGIRSRGVIIAVYTFAALCAGIAGLMISSNVSSADGNNAGLWIELD 257 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVVIGGTSL GGRF L GTV+GALIIQTLTTTIY IGVPPE T + Sbjct: 258 AILAVVIGGTSLAGGRFSLGGTVLGALIIQTLTTTIYSIGVPPETTLLFKALVVTVVCLL 317 Query: 181 QSDTFRAAIATRWKS--RHYPAEKE 203 QS FR + R + PA +E Sbjct: 318 QSPAFREKVFHRRRRPVTAPPAAEE 342 >Q08PR2.1 Q08PR2_STIAU ABC transporter, membrane spanning protein (Ribose) Length = 359 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 98/197 (49%), Positives = 121/197 (61%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 +V GRG+AQLITGGQIIT+ + Y++IG+G LA +PFS+F Sbjct: 160 LVTGRGLAQLITGGQIITIYYSPYSFIGNGFLAGIPFSLFIVAAVLSVLLLLTRKTALGL 219 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FIE++G NP A++ SG+RA + VY F SSNV SADGNNAGL +ELD Sbjct: 220 FIEAIGINPVAARFSGVRARAITFWVYAFCGLCAGIAGLIVSSNVKSADGNNAGLLFELD 279 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVV+GGTSL GGRF LTG V+GALIIQTLTTTIY GV PE+T + Sbjct: 280 AILAVVLGGTSLGGGRFTLTGGVLGALIIQTLTTTIYAAGVAPEVTLVVKAGVVFLVSIL 339 Query: 181 QSDTFRAAIATRWKSRH 197 QSD R + + K+R Sbjct: 340 QSDKVRNRLTSLGKARE 356 >A9GMP0.1 A9GMP0_SORC5 Put.Ribose/xylose/arabinose/galactoside ABC-type transport system permease Length = 352 Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 96/196 (48%), Positives = 116/196 (59%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 +V GRGIAQLITGGQIIT+ + Y IG+G L +P S+F Sbjct: 153 LVTGRGIAQLITGGQIITIYYSPYHVIGNGFLLGIPVSLFIVAGVGAVVWLLTRKTALGM 212 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FIE++G NP AS+++GIRA + A Y SSNV SADGNNAGL +ELD Sbjct: 213 FIEAIGVNPVASRLAGIRARTITFACYAVCGLCAGIAGLIVSSNVKSADGNNAGLLFELD 272 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVV+GGTSL+GG+F L G+VIGALIIQTLTTTIY GVPPE+ + Sbjct: 273 AILAVVLGGTSLSGGKFTLAGSVIGALIIQTLTTTIYSAGVPPEVNLVVKALVVFLITVV 332 Query: 181 QSDTFRAAIATRWKSR 196 QS R IA + R Sbjct: 333 QSQKVRDLIAKQRTRR 348 >A1TPE0.1 A1TPE0_ACIAC Inner-membrane translocator Length = 351 Score = 173 bits (438), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/189 (50%), Positives = 116/189 (61%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRGIAQLIT GQIIT+ T Y +IG G LA LPFS+F Sbjct: 149 MVAGRGIAQLITDGQIITIYYTPYFFIGGGYLAGLPFSLFVAAAVFAVLHLAITRTALGL 208 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 FI++VG NP A++++G++A +I+A YVF SSNV SADGNNAG ELD Sbjct: 209 FIQAVGVNPTAARVAGVQAGRLIMAAYVFCGACAGIAGLLISSNVKSADGNNAGQLMELD 268 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAV +GGT+L GGRF L G+VIGALIIQTLT IY +GVPPE+ + Sbjct: 269 AILAVTLGGTALTGGRFSLAGSVIGALIIQTLTYAIYSLGVPPEVNLVVKAVVVFVVMLL 328 Query: 181 QSDTFRAAI 189 QS FRA + Sbjct: 329 QSPEFRAQV 337 >B5HW82.1 B5HW82_9ACTO Ribose transport system permease protein Length = 361 Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 98/189 (51%), Positives = 112/189 (59%) Query: 1 MVAGRGIAQLITGGQIITVTSTKYAYIGSGSLAALPFSIFXXXXXXXXXXXXXXXXXXXX 60 MVAGRG+AQLIT GQIIT+ S Y IG G LPFSIF Sbjct: 144 MVAGRGVAQLITDGQIITINSEPYKLIGGGYWLTLPFSIFVVAAVVAVTVLLTRRTALGL 203 Query: 61 FIESVGCNPAASKMSGIRAHLVILAVYVFXXXXXXXXXXXXSSNVSSADGNNAGLWYELD 120 +ESVG N AS++ GIR+ + + VYVF SSN S+ADGNNAGLW ELD Sbjct: 204 LVESVGGNAEASRLVGIRSMRIKIMVYVFCAVCAGIAGLMISSNTSAADGNNAGLWIELD 263 Query: 121 AILAVVIGGTSLNGGRFYLTGTVIGALIIQTLTTTIYMIGVPPEITXXXXXXXXXXXXXI 180 AILAVVIGGTSL GGRF + GTVIGAL+IQTLTTTIY IGVP + + Sbjct: 264 AILAVVIGGTSLLGGRFSIGGTVIGALVIQTLTTTIYTIGVPTQTNLVFKAAVVIVVCLL 323 Query: 181 QSDTFRAAI 189 QS FRA + Sbjct: 324 QSPKFRAKV 332 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 926,738,587 Number of extensions: 26938926 Number of successful extensions: 64889 Number of sequences better than 1.0e-05: 2132 Number of HSP's gapped: 63489 Number of HSP's successfully gapped: 2132 Length of query: 209 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 79 Effective length of database: 1,835,964,253 Effective search space: 145041175987 Effective search space used: 145041175987 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)