BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0006.p (322 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4EH31.1 C4EH31_STRRS Monosaccharide ABC transporter membrane pr... 374 e-102 Q08PR1.1 Q08PR1_STIAU Putative sugar uptake ABC transporter perm... 370 e-101 C5CPI0.1 C5CPI0_VARPD Inner-membrane translocator 359 2e-97 A9GMN7.1 A9GMN7_SORC5 Put. Sugar transport system permease 354 6e-96 A1TPD9.1 A1TPD9_ACIAC Inner-membrane translocator 344 7e-93 >C4EH31.1 C4EH31_STRRS Monosaccharide ABC transporter membrane protein, CUT2 family Length = 327 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 191/315 (60%), Positives = 221/315 (70%) Query: 5 RKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGID 64 RKYIP++VT LF+ MF AG RY F + Q+++N+ +DNAFLL+ AVGM+FVIL+GGID Sbjct: 13 RKYIPVLVTACLFVAMFVAGGVRYDSFATGQIVLNVFIDNAFLLVVAVGMTFVILTGGID 72 Query: 65 LSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTLA 124 LSVG+V+ALSTM+SASLV QGWPPA VIPLVL +GA G MG IIHYF IQPFIVTLA Sbjct: 73 LSVGAVVALSTMISASLVTDQGWPPAAVIPLVLAIGAALGWAMGCIIHYFEIQPFIVTLA 132 Query: 125 GMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXHY 184 GMFLARGLCY I D+I+I + YTA+AQ R+ LPGG +S S HY Sbjct: 133 GMFLARGLCYTIGTDSISITDETYTALAQARVDLPGGMSVSPSVVIALVVVLVAAYVLHY 192 Query: 185 TRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAVG 244 TR GRNVYA GGSEQSALLMGLPVARTK+ VYT+SG CSAL GV+ + YMLSGYGLHAVG Sbjct: 193 TRLGRNVYATGGSEQSALLMGLPVARTKIAVYTISGFCSALGGVLLSLYMLSGYGLHAVG 252 Query: 245 FELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXXX 304 ELD I A + G+IQTIISFEGTLSSWWTKI IG Sbjct: 253 MELDAIAAVVIGGTLLTGGSGYLFGTVLGVLVLGLIQTIISFEGTLSSWWTKIFIGLLLL 312 Query: 305 XXXXXQRVLSSRRLT 319 QR++S RR T Sbjct: 313 VFILLQRLISVRRRT 327 >Q08PR1.1 Q08PR1_STIAU Putative sugar uptake ABC transporter permease protein Length = 347 Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust. Identities = 187/318 (58%), Positives = 231/318 (72%), Gaps = 3/318 (0%) Query: 3 LNRKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGG 62 L+ +Y+P+ VT+ LF+ MF AGSF + GFFSLQV +NL +DN+FL++TA+GM+FVI+SGG Sbjct: 24 LDPRYLPLTVTLGLFVAMFGAGSFAFDGFFSLQVFLNLFIDNSFLVVTAIGMTFVIISGG 83 Query: 63 IDLSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVT 122 IDLSVGSVIAL+TMV A+LV+ QGW PA+ +PLVL+MGAV G++ G +IHYF+IQPFIVT Sbjct: 84 IDLSVGSVIALTTMVLAALVENQGWSPALAVPLVLVMGAVIGSIQGFVIHYFAIQPFIVT 143 Query: 123 LAGMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXX 182 LAGMFLARGLCY+ISI++I I +TF+T ++ R PLP S +SI+ Sbjct: 144 LAGMFLARGLCYLISINSIAITHTFFTEVSALRFPLPFDSSISINVVIALAVLAGAIYLA 203 Query: 183 HYTRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHA 242 HYTRFGR +YA+GG+EQSALLMGLPVARTK+L YT SGLCSALAGV FTFYMLSGYGLHA Sbjct: 204 HYTRFGRTIYAMGGNEQSALLMGLPVARTKILTYTFSGLCSALAGVSFTFYMLSGYGLHA 263 Query: 243 VGFELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXX 302 G E+D I A I G IQT+I FEG+LSSWWTKIVIG Sbjct: 264 QGMEMDAIAAAVIGGTLLTGGSGYVAGTLVGVLIYGTIQTLIMFEGSLSSWWTKIVIGLL 323 Query: 303 XXXXXXXQRV---LSSRR 317 Q+V ++ RR Sbjct: 324 LLVFCLFQKVFEKITHRR 341 >C5CPI0.1 C5CPI0_VARPD Inner-membrane translocator Length = 342 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 188/313 (60%), Positives = 221/313 (70%) Query: 4 NRKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGGI 63 N KY+P+ TI LF+++ T GS Y GFFS QV +NLL+DNAFL++ AVGM+FVILSGGI Sbjct: 26 NPKYLPLAATISLFVLVATLGSVFYDGFFSAQVFLNLLIDNAFLIVVAVGMTFVILSGGI 85 Query: 64 DLSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVTL 123 DLSVGSVIAL+TMVSASLV++ GW PAVVIPLVL MG FG MG +I F +QPFIVTL Sbjct: 86 DLSVGSVIALTTMVSASLVEKHGWSPAVVIPLVLAMGTAFGAFMGLLIERFRLQPFIVTL 145 Query: 124 AGMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXXH 183 AGMFLARGLCY+ISID+I+I N FY ++Q RIP+ G + LSIS H Sbjct: 146 AGMFLARGLCYLISIDSISITNAFYAEVSQIRIPVWGEASLSISAVIAIGVLLAAVFIAH 205 Query: 184 YTRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHAV 243 T FGR VYA+GGSEQSALLMGLPV T + VYTLSG CSALAGV+FTFYMLSGYGLHA+ Sbjct: 206 CTPFGRAVYAIGGSEQSALLMGLPVRSTIIGVYTLSGFCSALAGVIFTFYMLSGYGLHAL 265 Query: 244 GFELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXXX 303 G ELD I A + G+IQT+ISF+GTLSSWWT+IV+G Sbjct: 266 GLELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIVVGALL 325 Query: 304 XXXXXXQRVLSSR 316 QR +SR Sbjct: 326 FVFCLLQRFFTSR 338 >A9GMN7.1 A9GMN7_SORC5 Put. Sugar transport system permease Length = 343 Score = 354 bits (909), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 186/317 (58%), Positives = 220/317 (69%) Query: 3 LNRKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGG 62 ++ +++P+ VT LF++MF AGS+ + GFFSLQV +N +DNAFLLITA+GM+FVILSGG Sbjct: 26 IDPRHLPLAVTSGLFVLMFAAGSYLFNGFFSLQVFLNFFIDNAFLLITAIGMTFVILSGG 85 Query: 63 IDLSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVT 122 IDLSVGSVIAL+TMVSASLV++ G PAVVIPLVL MG+ G VMG +I YF +QPFIVT Sbjct: 86 IDLSVGSVIALTTMVSASLVEKHGVSPAVVIPLVLAMGSGIGLVMGVVIQYFKVQPFIVT 145 Query: 123 LAGMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXX 182 LAGMFLARGLCY+ISID+ITI N FY ++ RIP + ++ + Sbjct: 146 LAGMFLARGLCYLISIDSITIRNGFYVDVSSHRIPFLFDTSITWNVVIALALFAAAIYVA 205 Query: 183 HYTRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHA 242 HYT FGR VYA+GGSEQSALLMGLPV RTKVL+YTLSG CSALAGV FTFYM+SGY LHA Sbjct: 206 HYTSFGRTVYAIGGSEQSALLMGLPVPRTKVLIYTLSGFCSALAGVAFTFYMVSGYALHA 265 Query: 243 VGFELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXX 302 G E+D I A I G IQT+I FEGTLSSWWTKIVIG Sbjct: 266 GGMEMDAIAAVVIGGTLLTGGHGTVVGTLFGVLIYGTIQTLIMFEGTLSSWWTKIVIGLL 325 Query: 303 XXXXXXXQRVLSSRRLT 319 QR+ R T Sbjct: 326 LLVACLLQRLFERRART 342 >A1TPD9.1 A1TPD9_ACIAC Inner-membrane translocator Length = 338 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 180/314 (57%), Positives = 216/314 (68%) Query: 3 LNRKYIPIIVTILLFIVMFTAGSFRYTGFFSLQVLMNLLVDNAFLLITAVGMSFVILSGG 62 LN +Y+P+ TI LF+ M T GS RYTGFFS QV +NLL+DNAFL+I AVGM+FVILSGG Sbjct: 20 LNARYLPLAATIALFVAMATLGSVRYTGFFSAQVFLNLLIDNAFLIIVAVGMTFVILSGG 79 Query: 63 IDLSVGSVIALSTMVSASLVQQQGWPPAVVIPLVLLMGAVFGTVMGAIIHYFSIQPFIVT 122 IDLSVG+V+AL+TMV ASLV++ GW PA +P+VLLMG FG MG +I F +QPFIVT Sbjct: 80 IDLSVGAVVALTTMVFASLVERHGWSPAAAVPVVLLMGTCFGAFMGFLIERFRLQPFIVT 139 Query: 123 LAGMFLARGLCYVISIDTITIDNTFYTAMAQTRIPLPGGSFLSISXXXXXXXXXXXXXXX 182 LAGMFLARGLCY+ISID+I+I + Y+ +AQ R+ L + +S Sbjct: 140 LAGMFLARGLCYLISIDSISITHEGYSELAQWRLQLSETASISPGALIAIAVVLAGVFIA 199 Query: 183 HYTRFGRNVYALGGSEQSALLMGLPVARTKVLVYTLSGLCSALAGVVFTFYMLSGYGLHA 242 H T FGR VYA+GGSE SA+LMGLPV T V VYTLSG CSALAGVVFTFYMLSGYGLHA Sbjct: 200 HCTPFGRAVYAVGGSEHSAVLMGLPVRSTLVGVYTLSGFCSALAGVVFTFYMLSGYGLHA 259 Query: 243 VGFELDTIVAXXXXXXXXXXXXXXXXXXXXXXXIQGVIQTIISFEGTLSSWWTKIVIGXX 302 VG ELD I A + G+IQT+ISF+GTLSSWWT+I +G Sbjct: 260 VGMELDAIAAVVIGGTLLTGGVGYVAGTLFGVLMLGIIQTLISFDGTLSSWWTRIAVGVL 319 Query: 303 XXXXXXXQRVLSSR 316 QR+L+ R Sbjct: 320 LFVFCLLQRLLTRR 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.142 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,448,291,772 Number of extensions: 49684396 Number of successful extensions: 244822 Number of sequences better than 1.0e-05: 3894 Number of HSP's gapped: 240128 Number of HSP's successfully gapped: 4249 Length of query: 322 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 186 Effective length of database: 1,779,438,163 Effective search space: 330975498318 Effective search space used: 330975498318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)