BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0005.p (346 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1TPE5.1 A1TPE5_ACIAC Periplasmic binding protein/LacI transcrip... 338 6e-91 C5CPH4.1 C5CPH4_VARPD Periplasmic binding protein/LacI transcrip... 337 9e-91 A9GMP5.1 A9GMP5_SORC5 Put.Periplasmic protein 333 2e-89 Q08PR4.1 Q08PR4_STIAU Putative sugar uptake ABC transporter peri... 330 8e-89 B2UHZ7.1 B2UHZ7_RALPJ Periplasmic binding protein/LacI transcrip... 320 1e-85 >A1TPE5.1 A1TPE5_ACIAC Periplasmic binding protein/LacI transcriptional regulator Length = 322 Score = 338 bits (866), Expect = 6e-91, Method: Compositional matrix adjust. Identities = 165/297 (55%), Positives = 216/297 (72%), Gaps = 4/297 (1%) Query: 50 KPVVLGFSQLGSESTWREANTASIREAAGEAGITLLLKNAEQDQQKQFEXXXXIRSFIRS 109 KP+VLGFSQ+G+ES WR ANT SI+ AA +AGI L +A+Q Q+ Q + IRSFI Sbjct: 30 KPIVLGFSQVGAESEWRTANTESIKSAARDAGIELKFSDAQQKQENQIKA---IRSFIAQ 86 Query: 110 GVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGVKAA 169 VDVIA +PVV++GWEP+L E K A IPV++ DR+VN D+SLYVTF+GSDF EEG KA Sbjct: 87 RVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDRAVNTKDTSLYVTFMGSDFVEEGRKAG 146 Query: 170 KYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSATADFTRSGG 229 +++ +KM+ + I ELQGTVGS P+IDR +GF +++ P +I S T DFTR+ G Sbjct: 147 RWLVEKMKDAKGDVNIVELQGTVGSAPAIDRKKGFEEVVKADPKFKIIRSQTGDFTRAKG 206 Query: 230 HEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFEQM 289 EVM+ FL+ + VLY+HNDDMAIGA++AI+EAGL PG+DI I+S+D + AFE M Sbjct: 207 KEVMEAFLKAEGRKI-NVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDAVKGAFEAM 265 Query: 290 VAGSINAVVECNPLLGPLLMQAVKEVMAGRTLPKRMVTPEDIYTRELAAIEINNRKY 346 +AG +N VEC+PLLGP LM AVK++ AG+T+PKR+VT E I+ E AA E RKY Sbjct: 266 MAGKLNVTVECSPLLGPQLMAAVKDIKAGKTVPKRIVTEEGIFPMETAAQEFPKRKY 322 >C5CPH4.1 C5CPH4_VARPD Periplasmic binding protein/LacI transcriptional regulator Length = 321 Score = 337 bits (864), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 165/299 (55%), Positives = 215/299 (71%), Gaps = 4/299 (1%) Query: 48 ADKPVVLGFSQLGSESTWREANTASIREAAGEAGITLLLKNAEQDQQKQFEXXXXIRSFI 107 A K +VLGFSQ+G+ES WR ANT SI+ +A EAGI L +A+Q Q+ Q + IRSFI Sbjct: 27 AQKKIVLGFSQVGAESEWRTANTESIKASAKEAGIELKFSDAQQKQENQIKA---IRSFI 83 Query: 108 RSGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGVK 167 VDVIA +PVV++GWE +L E K A IPV++ DRSVN D SLYVTF+GSDF EEG K Sbjct: 84 AQKVDVIAFSPVVESGWETVLREAKAAKIPVVLTDRSVNTKDDSLYVTFMGSDFVEEGRK 143 Query: 168 AAKYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSATADFTRS 227 A +++ +KM+ + I ELQGTVGS P+IDR +GF +++ P +I S T DFTR+ Sbjct: 144 AGRWLVEKMKDQKGEVNIVELQGTVGSAPAIDRKKGFEEIIKADPKFKILRSQTGDFTRA 203 Query: 228 GGHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFE 287 G EVM+ FL+ ++ VLY+HNDDMAIGA++AI+EAGL P +DI I+S+D + AFE Sbjct: 204 KGKEVMEAFLKAEGKKI-NVLYAHNDDMAIGAIQAIEEAGLKPAKDITIISIDAVKGAFE 262 Query: 288 QMVAGSINAVVECNPLLGPLLMQAVKEVMAGRTLPKRMVTPEDIYTRELAAIEINNRKY 346 M+AG +N VEC+PLLGP LM AVK++ AG+ LPKR+VT E I+ E+AA E NRKY Sbjct: 263 AMIAGKLNVSVECSPLLGPQLMSAVKDIKAGKQLPKRIVTEETIFPMEVAAKEFPNRKY 321 >A9GMP5.1 A9GMP5_SORC5 Put.Periplasmic protein Length = 323 Score = 333 bits (853), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 162/298 (54%), Positives = 217/298 (72%), Gaps = 4/298 (1%) Query: 49 DKPVVLGFSQLGSESTWREANTASIREAAGEAGITLLLKNAEQDQQKQFEXXXXIRSFIR 108 +K + LGFSQ+G+ES WR ANT SI E+A AGI L L +A+Q Q+ Q + IRSFI Sbjct: 30 NKQITLGFSQIGAESEWRTANTKSIEESAKAAGIDLKLSDAQQKQENQIKA---IRSFIA 86 Query: 109 SGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGVKA 168 VDVIA +PVV+TGWEP+L E K+A IPVI+ DR+V+ D SL+V+F+GSDF EEG +A Sbjct: 87 QKVDVIAFSPVVETGWEPVLREAKEAKIPVILTDRAVDTKDDSLWVSFMGSDFVEEGRRA 146 Query: 169 AKYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSATADFTRSG 228 A ++ +K + + + I ELQGTVGS P+IDR +GF +++ +P +I S T DFTR+ Sbjct: 147 ANWLVEKTKDQKDPVNIVELQGTVGSAPAIDRKKGFEEVIKDKPQFKIIRSQTGDFTRAK 206 Query: 229 GHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAFEQ 288 G EVM+ FL+ + VLY+HNDDMAIGA++AI+EAGL PG+DI+I+S+D + AFE Sbjct: 207 GKEVMEAFLKAEGKN-INVLYAHNDDMAIGAIQAIEEAGLRPGKDILIISIDAVKGAFEA 265 Query: 289 MVAGSINAVVECNPLLGPLLMQAVKEVMAGRTLPKRMVTPEDIYTRELAAIEINNRKY 346 M+AG +N VEC+PLLGP LM AVK++MAG+ LPKR+VT E ++ E AA E RKY Sbjct: 266 MMAGKLNVTVECSPLLGPQLMTAVKDLMAGKQLPKRIVTEEGVFPMETAAQEFPKRKY 323 >Q08PR4.1 Q08PR4_STIAU Putative sugar uptake ABC transporter periplasmic solute-binding protein Length = 324 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 167/305 (54%), Positives = 222/305 (72%), Gaps = 8/305 (2%) Query: 46 MAADKPVVLGFSQLGSESTWREANTASIREAAGEAGITLLLKNAEQDQQKQFEXXXXIRS 105 +A DK +VLGFSQ+G+ES WR ANT SI++AA GITL +A+Q Q+ Q + IRS Sbjct: 24 LAKDKKIVLGFSQVGAESEWRTANTQSIKDAAATEGITLKFSDAQQRQENQIKA---IRS 80 Query: 106 FIRSGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYEEG 165 FI VDVIA +PVV+TGWEP+L E K A IPVI+ DR+V+V D SL+V+F+GSDF EEG Sbjct: 81 FIAQRVDVIAFSPVVETGWEPVLREAKAARIPVILSDRAVDVKDDSLWVSFMGSDFVEEG 140 Query: 166 VKAAKYVRD----KMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSAT 221 +AAK++ D K + I ELQGTVGS P+IDR +GF ++L P +I S T Sbjct: 141 RRAAKWLIDYPPVKELAAKGDVNIVELQGTVGSAPAIDRKQGFEEVLKNAPKFKIIRSQT 200 Query: 222 ADFTRSGGHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDG 281 DFTR+ G EVM+ FL+ ++ VLY+HNDDMAIGA++AI+EAGL PG+D++IVS+D Sbjct: 201 GDFTRAKGKEVMEAFLKAEGKKI-NVLYAHNDDMAIGAIQAIEEAGLRPGKDVVIVSIDA 259 Query: 282 TRRAFEQMVAGSINAVVECNPLLGPLLMQAVKEVMAGRTLPKRMVTPEDIYTRELAAIEI 341 + AFE M+AG +N VEC+PLLGP LM AVK+V+AG+ +PKR+VT E ++ +E+AA E Sbjct: 260 VKGAFEAMIAGKLNCTVECSPLLGPQLMSAVKDVVAGKPVPKRIVTEEGVFPQEVAAKEF 319 Query: 342 NNRKY 346 +RKY Sbjct: 320 PHRKY 324 >B2UHZ7.1 B2UHZ7_RALPJ Periplasmic binding protein/LacI transcriptional regulator Length = 328 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 156/300 (52%), Positives = 213/300 (71%), Gaps = 5/300 (1%) Query: 47 AADKPVVLGFSQLGSESTWREANTASIREAAGEAGITLLLKNAEQDQQKQFEXXXXIRSF 106 AADK +GF+Q+G+ES WR AN+ SI+ A G+ L +A+Q Q+ Q + IRS+ Sbjct: 34 AADKSFTMGFAQVGAESEWRTANSESIKSTAKAQGVNLKFSDAQQKQENQIKA---IRSY 90 Query: 107 IRSGVDVIAIAPVVQTGWEPILLEIKQAGIPVIILDRSVNVPDSSLYVTFIGSDFYEEGV 166 I VDVIA +PVV++GW+ +L E K A IPVI+ DR ++ D+SLY TFIGSDF EEG Sbjct: 91 IAQKVDVIAFSPVVESGWDTVLQEAKAAKIPVILTDRGIDSKDTSLYTTFIGSDFVEEGR 150 Query: 167 KAAKYVRDKMRHHSEVIRIAELQGTVGSTPSIDRGRGFRKMLAGQPNLRITLSATADFTR 226 KA +++ + ++ +V I ELQGTVGS P+IDR RGF +++ P+ +I S T DFTR Sbjct: 151 KAGRWLLENVKPKGDV-NIVELQGTVGSAPAIDRKRGFEEIIKADPHYKIIRSQTGDFTR 209 Query: 227 SGGHEVMKIFLQQPKEQWPQVLYSHNDDMAIGAVEAIKEAGLVPGEDIIIVSVDGTRRAF 286 + G EVM+ FL+ ++ VLY+HNDDMAIGA++AI+EAGL PG+DI I+S+DG + AF Sbjct: 210 AKGKEVMEAFLKAEGKKI-NVLYAHNDDMAIGAIQAIEEAGLKPGKDITIISIDGVKGAF 268 Query: 287 EQMVAGSINAVVECNPLLGPLLMQAVKEVMAGRTLPKRMVTPEDIYTRELAAIEINNRKY 346 E M+AG +N VEC+PLLGP LM + V+AG+T+PKR+VT E I+ E+AA E NRKY Sbjct: 269 EAMMAGKLNVTVECSPLLGPQLMDTARAVLAGKTVPKRIVTKEGIFPMEVAAKEFPNRKY 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,713,053,431 Number of extensions: 65140848 Number of successful extensions: 189404 Number of sequences better than 1.0e-05: 1625 Number of HSP's gapped: 188175 Number of HSP's successfully gapped: 1626 Length of query: 346 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 210 Effective length of database: 1,779,438,163 Effective search space: 373682014230 Effective search space used: 373682014230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)