BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0004.p (641 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P45796.1 XYND_PAEPO Arabinoxylan arabinofuranohydrolase EC=3.2.1.55 949 0.0 B1A0K7.1 B1A0K7_PAEPO Endo-(1,4)-beta-xylanase 935 0.0 Q45071.2 XYND_BACSU Arabinoxylan arabinofuranohydrolase EC=3.2.1.55 726 0.0 A7Z5A2.1 A7Z5A2_BACA2 XynD EC=3.2.1.8 720 0.0 Q70K01.1 Q70K01_BACAM XynD protein 720 0.0 >P45796.1 XYND_PAEPO Arabinoxylan arabinofuranohydrolase EC=3.2.1.55 Length = 635 Score = 949 bits (2454), Expect = 0.0, Method: Compositional matrix adjust. Identities = 457/639 (71%), Positives = 542/639 (84%), Gaps = 6/639 (0%) Query: 3 MFKKLSVLAMTFVLLLGCLPMLSAQAAGNATAKQPGNSNPLMDHKLGADPFALTYNGRVY 62 M +K VL ++F LLL PML+ AA AK PGNSNPLMDHKLGADP++L Y+GRVY Sbjct: 1 MIRKCLVLFLSFALLLSVFPMLNVDAANRPLAKIPGNSNPLMDHKLGADPYSLVYDGRVY 60 Query: 63 IYMSSDAYVYNSNGTVKDNDFSALNKINVISSADMVNWTDHGAIPVAGANNVNGSAGIAK 122 I+MSSD YVYN +G++K+NDFSAL++I VISS DMVNWTDHG IPVAGANN N GIAK Sbjct: 61 IFMSSDTYVYNKDGSIKENDFSALDRIQVISSTDMVNWTDHGTIPVAGANNKNSGRGIAK 120 Query: 123 WASLSWAPSAAVKKINGQDKFFLYFANGASGIGVLTANSPIGPWSDPLGKALVTGSTPGM 182 WAS SWAP+ A KKING+DKFFLYFANG +GIGVLTA++PIGPW+DPLGKALVT STPGM Sbjct: 121 WASNSWAPAVAHKKINGRDKFFLYFANGGAGIGVLTADTPIGPWTDPLGKALVTHSTPGM 180 Query: 183 SGVTWLFDPAVLVDDDGSGYLYAGGGIPNTSDPASIASPKTARVLRLGADMTSIVGSAST 242 +GVTWLFDPAVLVDDDG+GYLY+GGGIPN SDPASIA+PKTARV++LGADMTS++GSA+T Sbjct: 181 AGVTWLFDPAVLVDDDGTGYLYSGGGIPNESDPASIANPKTARVIKLGADMTSVIGSATT 240 Query: 243 IDAPYMFEDSGIHKYGGKYYYSYCFNFSGTHPAAYPAGEIGYMVSNSPMGPYTYTGHFLK 302 IDAPY+FEDSGIHKY GKYYYSYC NF+GTHP YPAGEIGYMVS++PMGP+TY GHFLK Sbjct: 241 IDAPYLFEDSGIHKYNGKYYYSYCINFAGTHPQQYPAGEIGYMVSDNPMGPFTYKGHFLK 300 Query: 303 NPYTFFGVGGNNHHAVFNFNNQWYVVYHAQTVAKAVLGDGKGYRSPHINKLVHNANGTIQ 362 NPYTFFGVGGNNHHAVFNF N+WYVVYHAQTV+KA +G GKGYRSPHINKLVH +G+I Sbjct: 301 NPYTFFGVGGNNHHAVFNFKNEWYVVYHAQTVSKAQIGAGKGYRSPHINKLVHKEDGSIS 360 Query: 363 EVQGDMAGIAQIANLNPYTRVEAETIGWNAGITTERTQAAGGPVXXXXXXXXXXGDWVAV 422 EVQG+M GIAQ++N+NPYTRVEAETI W AG+TTE TQA+GGP+ GDW+AV Sbjct: 361 EVQGNMTGIAQLSNMNPYTRVEAETIAWQAGVTTEPTQASGGPISNLNVTNIHNGDWIAV 420 Query: 423 GNADFGS-GASSFKANVASATGGGKIEIRLDSATGPLVGTLNVPNTGGAQSWQEVQTTVS 481 G ADFGS GA +FKANVA+ GG IE+RLDS TGPLVG+L VP+TGG Q+W+EV+TT++ Sbjct: 421 GKADFGSAGAKTFKANVATNV-GGNIEVRLDSETGPLVGSLKVPSTGGMQTWREVETTIN 479 Query: 482 NATGVHRLYLVFTGSGSGNLFNFDYWQFSXXXXXXXXXXXVSKVEAEDMTLSGTYAGKIT 541 NATGVH +YLVFTGSGSGNL N D WQF+ ++KVEAE+M + GTYAGKI+ Sbjct: 480 NATGVHNIYLVFTGSGSGNLLNLDAWQFT----PNTGGNTITKVEAENMKIGGTYAGKIS 535 Query: 542 SPFSGVALYGNDDAAAFNQYYAFGTHNFSVRGASNNSATARVDLLIGGVNVGSFYFSGTT 601 +PF GVALY N D +++QY+A THN SVRGAS+N+ TA+VDL+IGGV VGSF F+G T Sbjct: 536 APFDGVALYANADYVSYSQYFANSTHNISVRGASSNAGTAKVDLVIGGVTVGSFNFTGKT 595 Query: 602 PSVQTLTNVAHATGNQEVKLVVTTDNGSWDAYVDYIEWS 640 P+VQTL+N+ HATG+QE+KL +T+D+G+WDAYVD+IE+S Sbjct: 596 PTVQTLSNITHATGDQEIKLALTSDDGTWDAYVDFIEFS 634 >B1A0K7.1 B1A0K7_PAEPO Endo-(1,4)-beta-xylanase Length = 635 Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/639 (70%), Positives = 537/639 (84%), Gaps = 6/639 (0%) Query: 3 MFKKLSVLAMTFVLLLGCLPMLSAQAAGNATAKQPGNSNPLMDHKLGADPFALTYNGRVY 62 M +K VL ++F LLL PML+ AA AK PGNSNPLMDHKLGADP++L Y+GRVY Sbjct: 1 MIRKCLVLFLSFALLLSVFPMLNVDAANRPLAKLPGNSNPLMDHKLGADPYSLVYDGRVY 60 Query: 63 IYMSSDAYVYNSNGTVKDNDFSALNKINVISSADMVNWTDHGAIPVAGANNVNGSAGIAK 122 IYMSSD YVYN +G++K+NDFS L++I VI S DMVNWTDHG IPVAGANN NG GIAK Sbjct: 61 IYMSSDTYVYNKDGSIKENDFSRLDRIQVIPSTDMVNWTDHGTIPVAGANNKNGGRGIAK 120 Query: 123 WASLSWAPSAAVKKINGQDKFFLYFANGASGIGVLTANSPIGPWSDPLGKALVTGSTPGM 182 WAS SWAP+ A KKING+DKFFLYFANG +GIGVLTA++PIGPW+DPLGKALVT STPGM Sbjct: 121 WASNSWAPAVAHKKINGRDKFFLYFANGGAGIGVLTADTPIGPWTDPLGKALVTHSTPGM 180 Query: 183 SGVTWLFDPAVLVDDDGSGYLYAGGGIPNTSDPASIASPKTARVLRLGADMTSIVGSAST 242 +GVTWLFDPAVLVD+DG+GYLY+GGGIPN DPASIA+PKTARV++LGADMTS++GSA+T Sbjct: 181 AGVTWLFDPAVLVDNDGTGYLYSGGGIPNEPDPASIANPKTARVIKLGADMTSVIGSATT 240 Query: 243 IDAPYMFEDSGIHKYGGKYYYSYCFNFSGTHPAAYPAGEIGYMVSNSPMGPYTYTGHFLK 302 IDAPY+FEDSGIHKY GKYYYSYC NF+GTHP YPAGEIGYMVS++PMGP+TY GHFLK Sbjct: 241 IDAPYLFEDSGIHKYNGKYYYSYCINFAGTHPPQYPAGEIGYMVSDNPMGPFTYKGHFLK 300 Query: 303 NPYTFFGVGGNNHHAVFNFNNQWYVVYHAQTVAKAVLGDGKGYRSPHINKLVHNANGTIQ 362 NPYTFFGVGGNNHHAVFNF N+WYVVYHAQTV+KA +GDGKGYRSPHINKLVH +G+I Sbjct: 301 NPYTFFGVGGNNHHAVFNFKNEWYVVYHAQTVSKAQIGDGKGYRSPHINKLVHKEDGSIS 360 Query: 363 EVQGDMAGIAQIANLNPYTRVEAETIGWNAGITTERTQAAGGPVXXXXXXXXXXGDWVAV 422 EVQG+M GIAQ++N+NPYTRVEAETI W AGI TE TQA+GGP+ GDW+AV Sbjct: 361 EVQGNMTGIAQLSNMNPYTRVEAETIAWQAGIATEPTQASGGPIGNLNVTNIHNGDWIAV 420 Query: 423 GNADFGS-GASSFKANVASATGGGKIEIRLDSATGPLVGTLNVPNTGGAQSWQEVQTTVS 481 G A+FGS GA +FKANVA+ GG IE+RLDS TGPLVG+L VP+TGG Q+W+EV+TT++ Sbjct: 421 GKANFGSTGAKTFKANVATNV-GGNIEVRLDSETGPLVGSLKVPSTGGMQTWREVETTIN 479 Query: 482 NATGVHRLYLVFTGSGSGNLFNFDYWQFSXXXXXXXXXXXVSKVEAEDMTLSGTYAGKIT 541 NATGVH +YLVFTGS +GNL N D WQF+ V+KVEAE+M + GT+AGKI+ Sbjct: 480 NATGVHNVYLVFTGSSNGNLLNLDAWQFT----PNTGENTVTKVEAENMNIGGTHAGKIS 535 Query: 542 SPFSGVALYGNDDAAAFNQYYAFGTHNFSVRGASNNSATARVDLLIGGVNVGSFYFSGTT 601 +PF GVALY N D +++QY+A THN SVRGAS+N+ TA+VDL+IGG VGSF F+G T Sbjct: 536 APFDGVALYANADYTSYSQYFANPTHNISVRGASSNAGTAKVDLVIGGTTVGSFNFTGKT 595 Query: 602 PSVQTLTNVAHATGNQEVKLVVTTDNGSWDAYVDYIEWS 640 P+V+TL+N+ HA G+QEVKL +T+D+G+WDAYVD+IE+S Sbjct: 596 PTVKTLSNITHAIGDQEVKLTLTSDDGTWDAYVDFIEFS 634 >Q45071.2 XYND_BACSU Arabinoxylan arabinofuranohydrolase EC=3.2.1.55 Length = 513 Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/512 (73%), Positives = 419/512 (81%), Gaps = 5/512 (0%) Query: 3 MFKKLSVLAMTFVLLLGCLPMLSAQAAGNAT-AKQPGNSNPLMDHKLGADPFALTYNGRV 61 M KK SV VLLL CL SA AA + T AK GNSNPL+DH LGADP ALTYNGRV Sbjct: 1 MRKKCSVCLWILVLLLSCLSGKSAYAATSTTIAKHIGNSNPLIDHHLGADPVALTYNGRV 60 Query: 62 YIYMSSDAYVYNSNGTVKDNDFSALNKINVISSADMVNWTDHGAIPVAGANNVNGSAGIA 121 YIYMSSD Y YNSNGT+KDN F+ LN++ VISSADMVNWTDHGAIPVAGAN NG GIA Sbjct: 61 YIYMSSDDYEYNSNGTIKDNSFANLNRVFVISSADMVNWTDHGAIPVAGANGANGGRGIA 120 Query: 122 KWASLSWAPSAAVKKINGQDKFFLYFANGASGIGVLTANSPIGPWSDPLGKALVTGSTPG 181 KWA SWAPS AVKKING+DKFFLYFAN GIGVLTA+SPIGPW+DP+GK LVT STPG Sbjct: 121 KWAGASWAPSIAVKKINGKDKFFLYFANSGGGIGVLTADSPIGPWTDPIGKPLVTPSTPG 180 Query: 182 MSGVTWLFDPAVLVDDDGSGYLYAGGGIPNTSDPAS--IASPKTARVLRLGADMTSIVGS 239 MSGV WLFDPAV VDDDG+GYLYAGGG+P S+P A+PKTARV++LG DMTS+VGS Sbjct: 181 MSGVVWLFDPAVFVDDDGTGYLYAGGGVPGVSNPTQGQWANPKTARVIKLGPDMTSVVGS 240 Query: 240 ASTIDAPYMFEDSGIHKYGGKYYYSYCFNFSGTHPAAYPAGEIGYMVSNSPMGPYTYTGH 299 ASTIDAP+MFEDSG+HKY G YYYSYC NF GTHPA P GEIGYM S+SPMGP+TY GH Sbjct: 241 ASTIDAPFMFEDSGLHKYNGTYYYSYCINFGGTHPADKPPGEIGYMTSSSPMGPFTYRGH 300 Query: 300 FLKNPYTFFGVGGNNHHAVFNFNNQWYVVYHAQTVAKAVLGDGKGYRSPHINKLVHNANG 359 FLKNP FFG GGNNHHAVFNF N+WYVVYHAQTV+ A+ G GKGYRSPHINKLVHNA+G Sbjct: 301 FLKNPGAFFGGGGNNHHAVFNFKNEWYVVYHAQTVSSALFGAGKGYRSPHINKLVHNADG 360 Query: 360 TIQEVQGDMAGIAQIANLNPYTRVEAETIGWNAGITTERTQAAGGPVXXXXXXXXXXGDW 419 +IQEV + AG+ QI+NLNPY RVEAET WN I TE++ A GGPV GDW Sbjct: 361 SIQEVAANYAGVTQISNLNPYNRVEAETFAWNGRILTEKSTAPGGPVNNQHVTSIQNGDW 420 Query: 420 VAVGNADFGSG-ASSFKANVASATGGGKIEIRLDSATGPLVGTLNVPNTGGAQSWQEVQT 478 +AVGNADFG+G A SFKANVAS T GGKIE+RLDSA G LVGTLNVP+TGGAQ+W+E++T Sbjct: 421 IAVGNADFGAGGARSFKANVAS-TLGGKIEVRLDSADGKLVGTLNVPSTGGAQTWREIET 479 Query: 479 TVSNATGVHRLYLVFTGSGSGNLFNFDYWQFS 510 VS ATGVH+++ VFTG+G+GNLFNFDYWQF+ Sbjct: 480 AVSGATGVHKVFFVFTGTGTGNLFNFDYWQFT 511 >A7Z5A2.1 A7Z5A2_BACA2 XynD EC=3.2.1.8 Length = 512 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/511 (70%), Positives = 410/511 (80%), Gaps = 4/511 (0%) Query: 3 MFKKLSVLAMTFVLLLGCLPMLSAQAAGNATAKQPGNSNPLMDHKLGADPFALTYNGRVY 62 M KK V LLL C SA AA AK GNSNPL+DH LGADPFALTYNGRVY Sbjct: 1 MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVY 60 Query: 63 IYMSSDAYVYNSNGTVKDNDFSALNKINVISSADMVNWTDHGAIPVAGANNVNGSAGIAK 122 IYMSSD Y YNS+GT+KDN F+ LNKI+VISSA+MVNWTDHG IP AGAN +NG GIAK Sbjct: 61 IYMSSDDYEYNSDGTIKDNSFANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAK 120 Query: 123 WASLSWAPSAAVKKINGQDKFFLYFANGASGIGVLTANSPIGPWSDPLGKALVTGSTPGM 182 WA SWAPSAAVKKING+DKFFLYFANG GIGVLTA+SP GPW+DP+GKALVT +TPGM Sbjct: 121 WAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSPTGPWTDPIGKALVTPNTPGM 180 Query: 183 SGVTWLFDPAVLVDDDGSGYLYAGGGIPNTSDPAS--IASPKTARVLRLGADMTSIVGSA 240 SGV WLFDPAV VDDDG+GYLYAGGG+P S+PA A+PKTARV++LG DMTS+ G+A Sbjct: 181 SGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA 240 Query: 241 STIDAPYMFEDSGIHKYGGKYYYSYCFNFSGTHPAAYPAGEIGYMVSNSPMGPYTYTGHF 300 STIDAP+MFEDSG+HKY GKYYYSYC NF G HPA P GEIGYM S+SPM ++Y GHF Sbjct: 241 STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHF 300 Query: 301 LKNPYTFFGVGGNNHHAVFNFNNQWYVVYHAQTVAKAVLGDGKGYRSPHINKLVHNANGT 360 LKNP FFG GGNNHHAVFNF N+WYVVYH QTV+ A+ G GKGYRSPHINKLVHN +G+ Sbjct: 301 LKNPGAFFGGGGNNHHAVFNFKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGS 360 Query: 361 IQEVQGDMAGIAQIANLNPYTRVEAETIGWNAGITTERTQAAGGPVXXXXXXXXXXGDWV 420 +QEV + AG+ Q++NLNPY RVEAET WN I TE + A GGPV GDW+ Sbjct: 361 LQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASSAPGGPVNNQHVTNIHNGDWI 420 Query: 421 AVGNADFGSG-ASSFKANVASATGGGKIEIRLDSATGPLVGTLNVPNTGGAQSWQEVQTT 479 AVGNADFGSG A +FKANVASA GG KIE+RLDSA G LVGTLNVP+TGG QSW+E++T Sbjct: 421 AVGNADFGSGGARTFKANVASALGG-KIEVRLDSANGKLVGTLNVPSTGGTQSWREIETA 479 Query: 480 VSNATGVHRLYLVFTGSGSGNLFNFDYWQFS 510 VS A+GVH ++ VFTG+G+GNLFNFDYWQF+ Sbjct: 480 VSGASGVHNVFFVFTGTGTGNLFNFDYWQFT 510 >Q70K01.1 Q70K01_BACAM XynD protein Length = 512 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/511 (70%), Positives = 410/511 (80%), Gaps = 4/511 (0%) Query: 3 MFKKLSVLAMTFVLLLGCLPMLSAQAAGNATAKQPGNSNPLMDHKLGADPFALTYNGRVY 62 M KK V LLL C SA AA AK GNSNPL+DH LGADPFALTYNGRVY Sbjct: 1 MCKKCWVCLWVLALLLSCFTGKSAYAASTPIAKHVGNSNPLIDHHLGADPFALTYNGRVY 60 Query: 63 IYMSSDAYVYNSNGTVKDNDFSALNKINVISSADMVNWTDHGAIPVAGANNVNGSAGIAK 122 IYMSSD Y YNS+GT+KDN F+ LNKI+VISSA+MVNWTDHG IP AGAN +NG GIAK Sbjct: 61 IYMSSDDYEYNSDGTIKDNSFANLNKISVISSANMVNWTDHGTIPAAGANGLNGGRGIAK 120 Query: 123 WASLSWAPSAAVKKINGQDKFFLYFANGASGIGVLTANSPIGPWSDPLGKALVTGSTPGM 182 WA SWAPSAAVKKING+DKFFLYFANG GIGVLTA+SP GPW+DP+GKALVT +TPGM Sbjct: 121 WAGASWAPSAAVKKINGKDKFFLYFANGGGGIGVLTADSPTGPWTDPIGKALVTPNTPGM 180 Query: 183 SGVTWLFDPAVLVDDDGSGYLYAGGGIPNTSDPAS--IASPKTARVLRLGADMTSIVGSA 240 SGV WLFDPAV VDDDG+GYLYAGGG+P S+PA A+PKTARV++LG DMTS+ G+A Sbjct: 181 SGVVWLFDPAVFVDDDGTGYLYAGGGVPGGSNPAQGQWANPKTARVMKLGPDMTSVAGNA 240 Query: 241 STIDAPYMFEDSGIHKYGGKYYYSYCFNFSGTHPAAYPAGEIGYMVSNSPMGPYTYTGHF 300 STIDAP+MFEDSG+HKY GKYYYSYC NF G HPA P GEIGYM S+SPM ++Y GHF Sbjct: 241 STIDAPFMFEDSGMHKYNGKYYYSYCINFGGAHPADKPPGEIGYMTSSSPMDSFSYRGHF 300 Query: 301 LKNPYTFFGVGGNNHHAVFNFNNQWYVVYHAQTVAKAVLGDGKGYRSPHINKLVHNANGT 360 LKNP FFG GGNNHHAVFNF N+WYVVYH QTV+ A+ G GKGYRSPHINKLVHN +G+ Sbjct: 301 LKNPGAFFGGGGNNHHAVFNFKNEWYVVYHTQTVSSALYGAGKGYRSPHINKLVHNPDGS 360 Query: 361 IQEVQGDMAGIAQIANLNPYTRVEAETIGWNAGITTERTQAAGGPVXXXXXXXXXXGDWV 420 +QEV + AG+ Q++NLNPY RVEAET WN I TE + A GGPV GDW+ Sbjct: 361 LQEVAANFAGVKQLSNLNPYHRVEAETFAWNGRILTEASSAPGGPVNNQHVTNIHNGDWI 420 Query: 421 AVGNADFGSG-ASSFKANVASATGGGKIEIRLDSATGPLVGTLNVPNTGGAQSWQEVQTT 479 AVGNADFGSG A +FKANVASA GG KIE+RLDSA G LVGTLNVP+TGG QSW+E++T Sbjct: 421 AVGNADFGSGGARTFKANVASALGG-KIEVRLDSANGKLVGTLNVPSTGGTQSWREIETA 479 Query: 480 VSNATGVHRLYLVFTGSGSGNLFNFDYWQFS 510 VS A+GVH ++ VFTG+G+GNLFNFDYWQF+ Sbjct: 480 VSGASGVHNVFFVFTGTGTGNLFNFDYWQFT 510 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.132 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,121,779,280 Number of extensions: 185528502 Number of successful extensions: 450086 Number of sequences better than 1.0e-05: 447 Number of HSP's gapped: 448592 Number of HSP's successfully gapped: 474 Length of query: 641 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 499 Effective length of database: 1,722,912,073 Effective search space: 859733124427 Effective search space used: 859733124427 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 135 (56.6 bits)