BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0003.p (276 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q11TG0.1 Q11TG0_CYTH3 CHU large protein; candidate polyfunctiona... 319 2e-85 C4CS24.1 C4CS24_9SPHI Beta-xylosidase 307 6e-82 B7AFY0.1 B7AFY0_9BACE Putative uncharacterized protein 305 3e-81 A5FD31.1 A5FD31_FLAJ1 Candidate beta-xylosidase/alpha-L-arabinof... 300 1e-79 B3C6N4.1 B3C6N4_9BACE Putative uncharacterized protein 299 2e-79 >Q11TG0.1 Q11TG0_CYTH3 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/a-L-arabinofuranosidase, CBM9 module, Glycoside Hydrolase Family 43 protein and Carbohydrate Esterase Family 6 protein EC=3.2.1.- Length = 1585 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 158/271 (58%), Positives = 199/271 (73%), Gaps = 7/271 (2%) Query: 7 NPSTAAAATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNY 66 N TAA TNP I AD PD ++RVGN YYM+STTMHM PGVP+MKS DLVNW+IVNY Sbjct: 283 NAQTAA----TNPIINADVPDIAIVRVGNNYYMSSTTMHMNPGVPIMKSTDLVNWDIVNY 338 Query: 67 VYDTYANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIENGP 126 Y T + D+ +L NG+NEYG GSWASS+RY G+YYV+ +N TGRTYIY+T NIE GP Sbjct: 339 CYTTLSTSDSYSLANGKNEYGHGSWASSIRYFKGMYYVTTFAN-TGRTYIYKTANIETGP 397 Query: 127 WTSSVLGSYYHDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSSNI 185 WT S L + YHD +L F D+ RV+L+YG +I +IELTADA AIKSGG ++ +I N+ + Sbjct: 398 WTVSTLNASYHDCNLFFDDDDRVYLIYGQGDIKIIELTADASAIKSGGTNKTLITNAGAV 457 Query: 186 AGSSFIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDSGIA 245 AG + AEG+ + K NGYYY+ ICWPSG RTQ+ +RS++LTG Y +V L D G+A Sbjct: 458 AG-PIGLNAEGSQVLKHNGYYYINNICWPSGGMRTQIIHRSSTLTGTYESKVILKDQGVA 516 Query: 246 QGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 QG ++TP+G WYA LF+D GA GR+ YLVP Sbjct: 517 QGSFIETPAGKWYAYLFKDGGARGRVPYLVP 547 >C4CS24.1 C4CS24_9SPHI Beta-xylosidase Length = 530 Score = 307 bits (787), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 144/277 (51%), Positives = 194/277 (70%), Gaps = 1/277 (0%) Query: 1 MLGILFNPSTAAAATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVN 60 M+ +L + A T TNP I+AD PD +IRVGN YYM+STTMH++PG+P+MKS DL+N Sbjct: 18 MVVLLQTQNRVVAQTATNPVIFADVPDMAMIRVGNTYYMSSTTMHLSPGLPIMKSNDLIN 77 Query: 61 WEIVNYVYDTYANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTT 120 W++V Y YDT DA +L NG++ YGRGSWASSLRY NG+YYV+ + ++GRT+IY T Sbjct: 78 WKMVGYAYDTLTTADAMSLTNGKSTYGRGSWASSLRYLNGLYYVTTFAQTSGRTHIYTTK 137 Query: 121 NIENGPWTSSVLGSYYHDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVII 179 +IE GPW + YHD SL F D+GR +L+YGA + L+EL DA +K G QVII Sbjct: 138 DIEKGPWKAVSFKPSYHDHSLFFDDDGRTYLIYGAGKLRLVELNTDASGVKPGTTEQVII 197 Query: 180 PNSSNIAGSSFIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSL 239 N+S +G+ + AEG+ + K+ G YY+F I WP G RT + +R+ +TG + G+V+L Sbjct: 198 ENASTPSGTGGGLPAEGSQLFKVKGKYYLFNISWPRGGMRTVIIHRADKITGPWEGRVAL 257 Query: 240 NDSGIAQGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 D G+AQGG++DTP G W+A LFRD G VGR+ YLVP Sbjct: 258 QDLGVAQGGLIDTPDGRWFAYLFRDFGGVGRIPYLVP 294 >B7AFY0.1 B7AFY0_9BACE Putative uncharacterized protein Length = 797 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 142/267 (53%), Positives = 186/267 (69%), Gaps = 2/267 (0%) Query: 11 AAAATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNYVYDT 70 +A TNP IYADAPD ++RVG+ YYM+STTMHM+PGVP+MKS DLVNW++VNY YDT Sbjct: 22 SAQKPATNPVIYADAPDMSMLRVGDTYYMSSTTMHMSPGVPIMKSNDLVNWKLVNYAYDT 81 Query: 71 YANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIENGPWTSS 130 AN NL++G+N YGRGSWAS LRYH G+YY+S + +TG+TY Y T N+E GPW + Sbjct: 82 LANIPTMNLDDGKNTYGRGSWASCLRYHEGVYYLSTFAQTTGKTYFYTTKNLEKGPWKCT 141 Query: 131 VLGSYYHDASLLFD-NGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSSNIAGSS 189 YHD S FD +G ++++YG + L EL D +K G +V+I N+S AG + Sbjct: 142 EFSPAYHDHSFFFDEDGHIYMIYGNGKLFLAELKPDLSGVKP-GTERVLIENASAPAGDN 200 Query: 190 FIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDSGIAQGGI 249 ++ AEG+ + K+NG YY+F I WP G RT + +R+ +TG Y G+V D GIAQGG+ Sbjct: 201 IMLGAEGSQLFKVNGKYYLFNITWPRGGVRTVIVHRADKITGPYEGRVVFQDRGIAQGGL 260 Query: 250 VDTPSGSWYAMLFRDSGAVGRMSYLVP 276 VDTP G W+A LF D GAVGR+ YLVP Sbjct: 261 VDTPDGRWFAYLFEDCGAVGRIPYLVP 287 >A5FD31.1 A5FD31_FLAJ1 Candidate beta-xylosidase/alpha-L-arabinofuranosidase; Glycoside hydrolase family 43 Length = 518 Score = 300 bits (767), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 136/274 (49%), Positives = 189/274 (68%), Gaps = 1/274 (0%) Query: 4 ILFNPSTAAAATFTNPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEI 63 ++ S A NP I+AD PD +IR+G+ YYM+STTMHM PGVP+MKS DL+NW+I Sbjct: 12 LILTGSNAQDKKAQNPVIFADVPDLSIIRIGSNYYMSSTTMHMNPGVPIMKSKDLINWKI 71 Query: 64 VNYVYDTYANGDAQNLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIE 123 +NY YDT + D NL+NG+N YGRGSWAS++R+HN ++YV+ S +TG+TY+Y T +IE Sbjct: 72 INYAYDTLGSSDELNLDNGKNTYGRGSWASNIRFHNNMFYVTTFSQTTGKTYVYTTKDIE 131 Query: 124 NGPWTSSVLGSYYHDASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNS 182 GPW YHD S+LF DN RV++VYG + + EL +D IK G+ QV+I N+ Sbjct: 132 KGPWKEISFSPAYHDHSILFDDNDRVYMVYGNGKLFIKELQSDLSGIKENGLDQVLIENA 191 Query: 183 SNIAGSSFIVKAEGAHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDS 242 S+ AG++ ++ AEG+ + KING YY+F I WP RT L +R+ + G + G++ L D Sbjct: 192 SSPAGNNIMLGAEGSQLYKINGKYYLFNIVWPKDGMRTVLIHRADKIAGPWEGKIGLQDL 251 Query: 243 GIAQGGIVDTPSGSWYAMLFRDSGAVGRMSYLVP 276 G+AQGG++DTP G W++ FRD G VGR+ Y VP Sbjct: 252 GVAQGGLIDTPDGKWFSYFFRDYGGVGRIPYFVP 285 >B3C6N4.1 B3C6N4_9BACE Putative uncharacterized protein Length = 543 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 137/260 (52%), Positives = 187/260 (71%), Gaps = 2/260 (0%) Query: 18 NPFIYADAPDNDVIRVGNVYYMTSTTMHMTPGVPVMKSYDLVNWEIVNYVYDTYANGDAQ 77 NP +YAD PD +IRVG+ YYM+STTMHM PGVP+MKS DLVNWE+VNY YD A+ DA Sbjct: 52 NPVMYADVPDMSMIRVGDTYYMSSTTMHMAPGVPIMKSKDLVNWELVNYCYDILADVDAL 111 Query: 78 NLNNGQNEYGRGSWASSLRYHNGIYYVSFGSNSTGRTYIYQTTNIENGPWTSSVLGSYYH 137 NLNNG+N YG G+WAS +RYHN +YYVS S++TG+TYIY T +IE GPW + YH Sbjct: 112 NLNNGKNAYGSGTWASCIRYHNNMYYVSTFSSTTGKTYIYATEDIEKGPWKTVTFTPSYH 171 Query: 138 DASLLF-DNGRVFLVYGADNISLIELTADAKAIKSGGISQVIIPNSSNIAGSSFIVKAEG 196 D ++ F D+GR+++++G + + EL D IK G ++ I N+S +G + + AEG Sbjct: 172 DHTVFFDDDGRIYIIWGGGKLHIAELKPDLSGIKE-GTERIFIENASAPSGDNVGLPAEG 230 Query: 197 AHIQKINGYYYVFLICWPSGSGRTQLTYRSTSLTGGYSGQVSLNDSGIAQGGIVDTPSGS 256 + + K+NG YY+F I WP G RT + +R+ ++ G + G+V+L D G+AQGG++DTP G Sbjct: 231 SQLFKVNGKYYLFNITWPRGGMRTVVIHRADNMNGPWEGRVALQDKGVAQGGLIDTPDGR 290 Query: 257 WYAMLFRDSGAVGRMSYLVP 276 W+A LFRD+GAVGR+ YLVP Sbjct: 291 WFAYLFRDNGAVGRIPYLVP 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,790,418,198 Number of extensions: 79982408 Number of successful extensions: 196117 Number of sequences better than 1.0e-05: 468 Number of HSP's gapped: 195185 Number of HSP's successfully gapped: 468 Length of query: 276 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 142 Effective length of database: 1,798,280,193 Effective search space: 255355787406 Effective search space used: 255355787406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)