BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0269.0002.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7AFY0.1 B7AFY0_9BACE Putative uncharacterized protein 258 3e-67 C4CS24.1 C4CS24_9SPHI Beta-xylosidase 254 4e-66 C1RWK8.1 C1RWK8_9SPHI Beta-xylosidase 247 5e-64 Q11TG0.1 Q11TG0_CYTH3 CHU large protein; candidate polyfunctiona... 242 1e-62 B3C6N4.1 B3C6N4_9BACE Putative uncharacterized protein 241 2e-62 >B7AFY0.1 B7AFY0_9BACE Putative uncharacterized protein Length = 797 Score = 258 bits (658), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 116/202 (57%), Positives = 145/202 (71%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 + + ASD+F G L VWQWNHNPDN+ WSL+ R+G++RLTTG++ TS A+N Sbjct: 316 IPGIVASDDFNRKKGERALPLVWQWNHNPDNALWSLSARKGYLRLTTGRMETSFTQAKNI 375 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGST 120 LTQRT GP TG +++ GMK+GD AGL+ FQ KYG VGVK++ K IVMVN + + Sbjct: 376 LTQRTIGPVCTGSVSMDVSGMKEGDFAGLSLFQRKYGQVGVKVTDGKKYIVMVNGENETP 435 Query: 121 TEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRF 180 EV V L+Q VY K CDF N+ DK YF YSLDG+NW ++GN L+M YT+PHFMGYRF Sbjct: 436 AEVEKVPLNQQVVYFKAECDFRNKVDKGYFYYSLDGSNWKAIGNVLKMQYTMPHFMGYRF 495 Query: 181 ALFNYATKSAGGYADFDYLRLE 202 ALFNYATK GGYADFDY ++E Sbjct: 496 ALFNYATKEVGGYADFDYFKIE 517 >C4CS24.1 C4CS24_9SPHI Beta-xylosidase Length = 530 Score = 254 bits (648), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 116/201 (57%), Positives = 142/201 (70%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 + + SDEFT G L VWQWNHNPDN+ WS+++R+GF+RL TG+ TS + ARNT Sbjct: 323 IPGIVNSDEFTRKKGDPALPLVWQWNHNPDNALWSVSERKGFLRLKTGRTDTSFVMARNT 382 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGST 120 LTQRT GP+ TG T L+ MKDGD AGL+ Q YG VGVK+ S+SIVMV+ASSG Sbjct: 383 LTQRTIGPECTGSTLLDASNMKDGDFAGLSLLQKNYGLVGVKVENGSRSIVMVSASSGKP 442 Query: 121 TEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRF 180 E+ V LSQ VYLK CDF ++ D A+F YSLDG W+ +G L+M YT+PHFMGYRF Sbjct: 443 VEIQRVPLSQKMVYLKAECDFNDRKDTAHFFYSLDGKAWSPIGEPLKMPYTIPHFMGYRF 502 Query: 181 ALFNYATKSAGGYADFDYLRL 201 LFNYAT GG+ADFDY R+ Sbjct: 503 GLFNYATLQTGGFADFDYFRI 523 >C1RWK8.1 C1RWK8_9SPHI Beta-xylosidase Length = 518 Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 114/200 (57%), Positives = 138/200 (69%) Query: 3 KVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNTLT 62 ++ ASDEF G L WQWNH P N WSL QR G++RLTTG+V TSL ARN LT Sbjct: 319 EIVASDEFNRKKGDRVLPYAWQWNHQPANHLWSLQQRPGYLRLTTGRVDTSLFLARNMLT 378 Query: 63 QRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGSTTE 122 QRT+GP+ +G+TAL+ MKDGD AGL FQ +YG++GVK+ N + +VMV+ SG E Sbjct: 379 QRTYGPQCSGITALDVTHMKDGDCAGLTLFQQEYGWIGVKVEKNVRYLVMVSYVSGRPVE 438 Query: 123 VANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRFAL 182 + L Q VYLK CDF N TDK YF YSLDG +W G LQM YTLPHF+GYR+ L Sbjct: 439 QGRIPLQQKTVYLKADCDFRNLTDKGYFYYSLDGQSWVQFGTVLQMKYTLPHFIGYRYGL 498 Query: 183 FNYATKSAGGYADFDYLRLE 202 FNYAT +AGGYADFD+ R + Sbjct: 499 FNYATTTAGGYADFDFFRWQ 518 >Q11TG0.1 Q11TG0_CYTH3 CHU large protein; candidate polyfunctional acetylxylan esterase/b-xylosidase/a-L-arabinofuranosidase, CBM9 module, Glycoside Hydrolase Family 43 protein and Carbohydrate Esterase Family 6 protein EC=3.2.1.- Length = 1585 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 113/203 (55%), Positives = 150/203 (73%), Gaps = 5/203 (2%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 + + +SDEF S L WQWNHNP N+ WSLTQ+ G++RLT + ++L NT Sbjct: 573 MHNIVSSDEF---SQAAPLKLAWQWNHNPQNNYWSLTQKSGYLRLTNERTDPNVLMTTNT 629 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNAS--SG 118 LTQRTFGP+ +G T ++ GMKDGD AGL A Q +YG+VGVKM+G +KSIVMVN + +G Sbjct: 630 LTQRTFGPQCSGYTVIDVSGMKDGDYAGLVALQKQYGYVGVKMTGTTKSIVMVNGNDVTG 689 Query: 119 STTEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGY 178 + +VA+V L+QN +YL++ D+ NQTDKAYF YSL+G W S+G+TLQMSYT+P F+GY Sbjct: 690 TPAQVASVPLNQNIIYLRIDMDYRNQTDKAYFYYSLNGTTWQSIGSTLQMSYTIPQFIGY 749 Query: 179 RFALFNYATKSAGGYADFDYLRL 201 R+ LF YA+ SAGGYADFD+ R+ Sbjct: 750 RYGLFTYASVSAGGYADFDFFRI 772 >B3C6N4.1 B3C6N4_9BACE Putative uncharacterized protein Length = 543 Score = 241 bits (616), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 110/201 (54%), Positives = 140/201 (69%) Query: 1 VKKVYASDEFTAPSGGTGLAKVWQWNHNPDNSKWSLTQRQGFMRLTTGKVSTSLLDARNT 60 + + ASDEF L VWQWNHNPDNS WS+ +R+G++RL TG+V L ARNT Sbjct: 339 IPGIVASDEFIRKKKDAALPLVWQWNHNPDNSLWSVGERKGYLRLKTGRVDADFLSARNT 398 Query: 61 LTQRTFGPKSTGVTALETGGMKDGDVAGLAAFQAKYGFVGVKMSGNSKSIVMVNASSGST 120 LTQRT GP +G T+++ MK+GD AGLA Q KYGFVGV K IVMV+A + Sbjct: 399 LTQRTVGPVCSGTTSMDVSNMKEGDFAGLALLQKKYGFVGVMYENGVKKIVMVSAQTDKP 458 Query: 121 TEVANVLLSQNRVYLKVVCDFTNQTDKAYFSYSLDGNNWTSLGNTLQMSYTLPHFMGYRF 180 EV ++ L+Q+ V+LK C+FT++ D A F YSLDG W +G+ L+M+YTLPHFMGYRF Sbjct: 459 EEVESLPLNQDTVFLKAECNFTDRKDMADFYYSLDGKKWIKIGSQLKMAYTLPHFMGYRF 518 Query: 181 ALFNYATKSAGGYADFDYLRL 201 LFNYATK++GGY DFDY R+ Sbjct: 519 GLFNYATKTSGGYVDFDYFRI 539 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.130 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,260,712,164 Number of extensions: 49300231 Number of successful extensions: 115564 Number of sequences better than 1.0e-05: 125 Number of HSP's gapped: 115376 Number of HSP's successfully gapped: 129 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)