BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0268.0002.p (243 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA02.1 B3KA02_9BACI Glycosyl transferase family 2 290 8e-77 B1DJP3.1 B1DJP3_9BACL Glycosyl transferase family 2 246 2e-63 A8FI37.1 A8FI37_BACP2 Possible glycosyltransferase 215 3e-54 Q97GL9.1 Q97GL9_CLOAB Glycosyltransferase 214 4e-54 B1D797.1 B1D797_9BACL Glycosyl transferase family 2 212 3e-53 >B3KA02.1 B3KA02_9BACI Glycosyl transferase family 2 Length = 242 Score = 290 bits (742), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 135/242 (55%), Positives = 176/242 (72%), Gaps = 3/242 (1%) Query: 2 TSIIIPTYNKLSLLSSCVEAVRAYTELPYEIIVIDNASTDGTDAFCRENKLTFISLPQNR 61 TSIIIPT+N LL C+ +++ +T PYEIIV+DN S+DGT CR+ +TFISL N Sbjct: 4 TSIIIPTFNGRDLLKDCIYSIKRHTNEPYEIIVVDNGSSDGTVDICRQEGITFISLANNI 63 Query: 62 GFPAACNLGMQLASGDELLLLNNDVIVSQGWLTHLKNALYSAPDIGIVGPVTNYASGRQQ 121 GFPAACN G+++A+GD LLLLNNDVIV++ WL ++ N L S +IGIVGP+TNYASG+QQ Sbjct: 64 GFPAACNKGLKIATGDTLLLLNNDVIVTRNWLQNMLNCLNSETNIGIVGPLTNYASGKQQ 123 Query: 122 ISVPYTDISGFHAEAERLGLRGPSEWIGTQRLVGLCFLFKRELLDTIGFLDERYSPGHYE 181 I +PYT + + +L S+W+ R+VGLCFLFKREL+D IG LDERYSPGH+E Sbjct: 124 IDMPYTSLEEM---SNQLNEPDASKWLQVDRIVGLCFLFKRELMDRIGLLDERYSPGHFE 180 Query: 182 DDDYCYRARLRGYRLLIAGNCLVHHEGSASFKEVYSSRLQELVERNRRIFMDKWHADPAE 241 DDDYCYRAR GY IAG+ V H GSASF + S+++ L++ N++ FMDKW DP Sbjct: 181 DDDYCYRARNAGYTFRIAGDVFVFHHGSASFAKQDMSQVKHLIDTNKQKFMDKWGVDPTI 240 Query: 242 FI 243 ++ Sbjct: 241 YV 242 >B1DJP3.1 B1DJP3_9BACL Glycosyl transferase family 2 Length = 258 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/243 (54%), Positives = 169/243 (69%), Gaps = 6/243 (2%) Query: 1 MTSIIIPTYNKLSLLSSCVEAVRAYTELPYEIIVIDNASTDGTDAFCRENKLTFISLPQN 60 +TSIIIPT N +SLL + +R +T+ PYE+IVIDN STDGT + ++ ++ ISLP N Sbjct: 2 LTSIIIPTCNAVSLLRETIGTIRNHTKDPYELIVIDNGSTDGTLDYLKQQRIIAISLPAN 61 Query: 61 RGFPAACNLGMQLASGDELLLLNNDVIVSQGWLTHLKNALYSAPDIGIVGPVTNYASGRQ 120 GFPAACN GM+LA GD LLLLNNDV+V+ WL + NAL S P IG+VGP+TNYASGRQ Sbjct: 62 TGFPAACNWGMRLARGDRLLLLNNDVLVTSEWLRRMHNALDSDPSIGLVGPMTNYASGRQ 121 Query: 121 QISVPYTDISGFHAE-AERLGLRGPSEWIGTQRLVGLCFLFKRELLDTIGFLDERYSPGH 179 QI+ ++G + E A RL + + R++G C LF R L+ IG LDER+SPGH Sbjct: 122 QIT-----MTGRYDEFAARLKIDENGQREFVNRIIGFCMLFSRSLMQKIGQLDERFSPGH 176 Query: 180 YEDDDYCYRARLRGYRLLIAGNCLVHHEGSASFKEVYSSRLQELVERNRRIFMDKWHADP 239 YEDDDYCYRA GYR+ +A + V+H GSASF L+ELV+RNRR+FM+KW DP Sbjct: 177 YEDDDYCYRAYRAGYRVAVAKDAFVYHHGSASFGGYAGEALEELVDRNRRLFMEKWGIDP 236 Query: 240 AEF 242 E Sbjct: 237 LEL 239 >A8FI37.1 A8FI37_BACP2 Possible glycosyltransferase Length = 512 Score = 215 bits (547), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 103/239 (43%), Positives = 148/239 (61%), Gaps = 2/239 (0%) Query: 2 TSIIIPTYNKLSLLSSCVEAVRAYTELP-YEIIVIDNASTDGTDAFCRE-NKLTFISLPQ 59 TSI++ TYN+L L C+++++ +T YE+I++DNASTDGT + RE N + FI + Sbjct: 52 TSIVMLTYNELHLTKKCIDSIKQHTRSEQYELIIVDNASTDGTKEYVRELNDVIFIENEE 111 Query: 60 NRGFPAACNLGMQLASGDELLLLNNDVIVSQGWLTHLKNALYSAPDIGIVGPVTNYASGR 119 NRGF CN G + A+GD +L LNND IV++ WL+ L+ AL+++ IG+VGPV+NY SG Sbjct: 112 NRGFAKGCNQGAKKATGDSILFLNNDTIVTENWLSPLREALFASERIGMVGPVSNYVSGP 171 Query: 120 QQISVPYTDISGFHAEAERLGLRGPSEWIGTQRLVGLCFLFKRELLDTIGFLDERYSPGH 179 Q + YTD+ A A+ + RLVG C L K+EL++ +G DER+ G Sbjct: 172 QMVESTYTDVKELPAFAKNYTAAKKGQRTYVHRLVGFCLLVKKELIEKVGLFDERFVYGS 231 Query: 180 YEDDDYCYRARLRGYRLLIAGNCLVHHEGSASFKEVYSSRLQELVERNRRIFMDKWHAD 238 +EDDD C R+ L GY+L I + VHH G A+F+ + + L NR F+DKW D Sbjct: 232 FEDDDLCLRSLLNGYQLQIVHDSFVHHHGHATFRANQDTNITTLFTENRLRFLDKWGID 290 >Q97GL9.1 Q97GL9_CLOAB Glycosyltransferase Length = 243 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 102/236 (43%), Positives = 150/236 (63%), Gaps = 5/236 (2%) Query: 2 TSIIIPTYNKLSLLSSCVEAVRAYTEL-PYEIIVIDNASTDGT-DAFCRENKLTFISLPQ 59 TSIII T N L C+E+++ YTE YEIIV+DN S DGT + ++ + I Sbjct: 3 TSIIILTCNNLRYSRRCIESIKKYTEKEAYEIIVVDNNSNDGTRNWLSKQKAIKKIYNNV 62 Query: 60 NRGFPAACNLGMQLASGDELLLLNNDVIVSQGWLTHLKNALYSAPDIGIVGPVTNYASGR 119 N GFP CN+G+++A G E+LLLNNDV+V+ WL +L+N LYS+ +IG VGP++N S Sbjct: 63 NVGFPRGCNMGIKVACGSEVLLLNNDVVVTHNWLNNLRNCLYSSYEIGAVGPISNNCSNG 122 Query: 120 QQISVPYTDISGFHAEAERLGLRGPSEWIGTQRLVGLCFLFKRELLDTIGFLDERYSPGH 179 Q+I+V Y I H +++ + +W +RL+G CFL KR ++ +G DER++PG+ Sbjct: 123 QKINVRYDSIEDMHRFSKKYNISNKKKWTEVKRLIGFCFLIKRNVIRKVGLFDERFTPGN 182 Query: 180 YEDDDYCYRARLRGYRLLIAGNCLVHHEGSASFKEVYSSRLQELVERNRRIFMDKW 235 +EDDDYC R R G+RL++ + VHH GS SFK +++ +L+E N+ KW Sbjct: 183 FEDDDYCIRMRKIGFRLMLCKDTFVHHYGSVSFK---NTQYLKLLEVNKSKLEKKW 235 >B1D797.1 B1D797_9BACL Glycosyl transferase family 2 Length = 448 Score = 212 bits (539), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 153/244 (62%), Gaps = 4/244 (1%) Query: 2 TSIIIPTYNKLSLLSSCVEAVRAYTELPYEIIVIDNASTDGTDAFCRE--NKLTFISLPQ 59 TSIIIP+YN+++ L C++++ TE P+EIIV+DNASTDGT + + ++ + L Q Sbjct: 49 TSIIIPSYNQVNYLRGCIDSIVDNTEQPHEIIVVDNASTDGTAEYLEQLDGQVRYRVLDQ 108 Query: 60 NRGFPAACNLGMQLASGDELLLLNNDVIVSQGWLTHLKNALYSAPDIGIVGPVTNYASGR 119 N GF A N G+ +A G +L+LNND +V+ WL +L L+S P IG+VGPVTNY SG Sbjct: 109 NYGFAGAVNTGLMMAKGTTMLVLNNDTLVTDNWLGNLLICLHSDPTIGMVGPVTNYISGD 168 Query: 120 QQISVPYTDISGFHAEAERLGLRGPSEWIGTQRLVGLCFLFKRELLDTIGFLDERYSPGH 179 QQI V Y I A + P W T RL G C LF+REL + +GFLDE + G+ Sbjct: 169 QQIPVLYERIEDMPEFARLNNISDPKRWERTDRLPGFCLLFRRELWEQVGFLDEGFEFGN 228 Query: 180 YEDDDYCYRARLRGYRLLIAGNCLVHHEGSASFKEVYSSRLQELVERNRRIFMDKWHADP 239 YEDDDY R RL GY L+IA + +HH GS S K + +L+++ RN +M KW+ +P Sbjct: 229 YEDDDYNIRTRLLGYSLVIARDSFIHHFGSVSIKAL-GDQLEQVNTRNMVYYMTKWN-NP 286 Query: 240 AEFI 243 +I Sbjct: 287 YAWI 290 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,514,097,748 Number of extensions: 63157419 Number of successful extensions: 140479 Number of sequences better than 1.0e-05: 1571 Number of HSP's gapped: 142047 Number of HSP's successfully gapped: 1583 Length of query: 243 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 111 Effective length of database: 1,817,122,223 Effective search space: 201700566753 Effective search space used: 201700566753 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)