BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0268.0001.p (218 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA01.1 B3KA01_9BACI Glycosyl transferase family 2 164 7e-39 B1DJP4.1 B1DJP4_9BACL Glycosyl transferase family 2 157 7e-37 A7GPQ1.1 A7GPQ1_BACCN Glycosyl transferase family 2 132 1e-29 C2VVD5.1 C2VVD5_BACCE Glycosyl transferase family 2 132 2e-29 Q6HH94.1 Q6HH94_BACHK Glycosyl transferase, group 2 family prote... 132 2e-29 >B3KA01.1 B3KA01_9BACI Glycosyl transferase family 2 Length = 356 Score = 164 bits (414), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 89/207 (42%), Positives = 119/207 (57%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 V+NG TD S+ ++RN +A +VH ++ GHDVGRA+GAKL+ DILLFLDGD+ I A L Sbjct: 146 VVNGSTDESFEMIRNQSRAIIVHYKQALGHDVGRAVGAKLADSDILLFLDGDVPILAEHL 205 Query: 61 AVFASAVDGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHALS 120 F A++ G VT K ++N +GR DL +S+TAVPHA+ Sbjct: 206 VPFIDAIEQGSDIALNNISPWIGMFSERDYVTTVKEFINRSMGRADLEANSLTAVPHAMR 265 Query: 121 RRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLRQGNTGAGNAMEQLIAG 180 + A + IGY L+VPPKAQ +++ L++ VDVI NRLR N G NA+ LI G Sbjct: 266 KEAAQIIGYANLSVPPKAQVIALEKGLKINAPASVDVITKNRLRARNVGQQNAVSDLIIG 325 Query: 181 DHAEALFRVLMHRNAGGIISAEIRQEQ 207 DH EAL V + +IRQ Q Sbjct: 326 DHIEALKTVFDLKGPRLSFMDQIRQRQ 352 >B1DJP4.1 B1DJP4_9BACL Glycosyl transferase family 2 Length = 380 Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 81/186 (43%), Positives = 113/186 (60%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 V+NG TD+S+ + R +A ++H E+ GHDVGRA+GAK++ D+++FLD D+ + A QL Sbjct: 161 VVNGSTDSSFMMARTSSRAIILHYNEALGHDVGRAIGAKITTSDVVIFLDADIPVAAEQL 220 Query: 61 AVFASAVDGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHALS 120 F D + V+ K +LN R+DL V+SMTAVPHALS Sbjct: 221 LSFVRVTDRDMDVALNDLSRYVGMFSDWDEVSIMKYFLNRSNRRDDLNVNSMTAVPHALS 280 Query: 121 RRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLRQGNTGAGNAMEQLIAG 180 RRA+E IG+ L VPPKAQA+++ LR+ G ++V K NR R+ N G N + +LI G Sbjct: 281 RRAIEVIGFANLAVPPKAQAIALQRGLRIGIGGCINVFKRNRHRKDNVGVNNPISKLIMG 340 Query: 181 DHAEAL 186 DH EAL Sbjct: 341 DHLEAL 346 >A7GPQ1.1 A7GPQ1_BACCN Glycosyl transferase family 2 Length = 513 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/203 (38%), Positives = 107/203 (52%), Gaps = 5/203 (2%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 V+NG TD + + + AT+V E G+D GRA+GA +RGDILLF+DGD VIP++ L Sbjct: 312 VVNGTTDKTAEIAKK-HGATIVMYEEELGNDTGRAIGAYFARGDILLFIDGDFVIPSNDL 370 Query: 61 AVFASAVDGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHALS 120 F AV+ GV VT CK +N R DLGV S+ AVPHA S Sbjct: 371 LPFVHAVENGVDLALNDLDHYLSYRFPLYIVTACKYAVNLACDRKDLGVGSIVAVPHAFS 430 Query: 121 RRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLRQ----GNTGAGNAMEQ 176 ++ +E IG+ LT P Q +I+ L+V+ +VDV K NR+R TG Sbjct: 431 KKCIETIGFDALTSPVYGQVKAILSGLQVKNVHRVDVDKMNRIRPDKHFSKTGGLAPSTT 490 Query: 177 LIAGDHAEALFRVLMHRNAGGII 199 I GDH EA+ ++ + G+ Sbjct: 491 RIVGDHIEAISYLIQQKGERGLF 513 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 6/191 (3%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 V NGCTD S + +K V++ + GH++GRA+GA+ ++GDILLF+D D + ++ L Sbjct: 37 VANGCTDRSVEIAHKYK-CHVLNFEAALGHNIGRAIGAQQAKGDILLFMDADFPLDSNIL 95 Query: 61 AVFASAV-DGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHAL 119 F + + T + N R DL + S +VPHA+ Sbjct: 96 REFLQPLMNHTADVVLNNLDYIFYKKQRPHSTTIWRQVTNQFFHRPDLKIDSPISVPHAM 155 Query: 120 SRRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLR-QGNTGAGNAM---E 175 ++ + IG L P A I R+ + ++DVI NR+ Q + N + E Sbjct: 156 TKEVVHTIGAESLGNPTLAHLKIIQHNFRISRHKQIDVISINRVNPQQHFAKHNELSTSE 215 Query: 176 QLIAGDHAEAL 186 + I G+H A+ Sbjct: 216 KRIIGNHIAAM 226 >C2VVD5.1 C2VVD5_BACCE Glycosyl transferase family 2 Length = 496 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 103/193 (53%), Gaps = 5/193 (2%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 ++NG TD + L +N ATV+ E G D GRA+GA ++GDILLF+DGD +IP+S L Sbjct: 297 IVNGSTDKTEELAKNCG-ATVITYKEVLGIDTGRAVGAYFAKGDILLFIDGDFLIPSSDL 355 Query: 61 AVFASAVDGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHALS 120 F +V G VT CK +N V R DLG+ S TAVPHA S Sbjct: 356 LPFVQSVQNGTDLALNKLEHYYMYRLPYTIVTACKYAVNLVCNRKDLGMGSTTAVPHAFS 415 Query: 121 RRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLRQ----GNTGAGNAMEQ 176 R+ ++ IG+ L P +Q +I+ L V+K VDV K NR+R G + Q Sbjct: 416 RKCIDTIGFHSLLSPTLSQVKTILAGLHVQKVHSVDVDKINRVRPEKHFSKEGYLSLATQ 475 Query: 177 LIAGDHAEALFRV 189 I GDH EA++ + Sbjct: 476 QIIGDHIEAIYYI 488 >Q6HH94.1 Q6HH94_BACHK Glycosyl transferase, group 2 family protein EC=2.4.-.- Length = 496 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/193 (39%), Positives = 103/193 (53%), Gaps = 5/193 (2%) Query: 1 VLNGCTDNSYGLVRNFKQATVVHCPESAGHDVGRALGAKLSRGDILLFLDGDMVIPASQL 60 ++NG TD + L +N ATV+ E G D GRA+GA ++GDILLF+DGD +IP+S L Sbjct: 297 IVNGSTDKTEELAKNCG-ATVITYKEVLGIDTGRAVGAYFAKGDILLFIDGDFLIPSSDL 355 Query: 61 AVFASAVDGGVXXXXXXXXXXXXXXXXXXXVTRCKLYLNSVLGRNDLGVSSMTAVPHALS 120 F +V G VT CK +N V R DLG+ S TAVPHA S Sbjct: 356 LPFVQSVQNGTDLALNKLEHYYMYRLPYTIVTACKYAVNLVCNRKDLGMGSTTAVPHAFS 415 Query: 121 RRALERIGYRELTVPPKAQALSIIGQLRVEKAGKVDVIKHNRLRQ----GNTGAGNAMEQ 176 R+ ++ IG+ L P +Q +I+ L V+K VDV K NR+R G + Q Sbjct: 416 RKCIDTIGFHSLLSPTLSQVKTILAGLHVQKVHSVDVDKINRVRPEKHFSKEGYLSLATQ 475 Query: 177 LIAGDHAEALFRV 189 I GDH EA++ + Sbjct: 476 QIIGDHIEAIYYI 488 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,128,374,457 Number of extensions: 39094807 Number of successful extensions: 93285 Number of sequences better than 1.0e-05: 276 Number of HSP's gapped: 92869 Number of HSP's successfully gapped: 402 Length of query: 218 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 88 Effective length of database: 1,835,964,253 Effective search space: 161564854264 Effective search space used: 161564854264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)