BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0267.0019.p (256 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8W7.1 B3K8W7_9BACI Hydrolase, TatD family 457 e-127 B1DIJ3.1 B1DIJ3_9BACL Hydrolase, TatD family 419 e-115 C0ZHC3.1 C0ZHC3_BREBN Putative deoxyribonuclease EC=3.1.21.- 355 2e-96 Q65PI2.1 Q65PI2_BACLD YabD 351 4e-95 C2YKJ3.1 C2YKJ3_BACCE Uncharacterized deoxyribonuclease yabD 348 3e-94 >B3K8W7.1 B3K8W7_9BACI Hydrolase, TatD family Length = 254 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 210/253 (83%), Positives = 235/253 (92%) Query: 3 LFDTHTHLDAPQFDEDRAGVIARALEAGVSKMINIGFNRETIPTTMKLAETYDYIYAAVG 62 LFDTHTH+DAPQFDEDR I RALEAGV++MINIGFNRETIPTTMKLAETYD+IYAAVG Sbjct: 2 LFDTHTHMDAPQFDEDREAAIHRALEAGVTRMINIGFNRETIPTTMKLAETYDFIYAAVG 61 Query: 63 WHPVDAIDMKEGDMDWIASLCSHKKVVAIGEIGLDYYWDTSPKEVQHEVFRKQIGLAREL 122 WHPVDAI M++ D+DWIASLCSH KVVAIGEIGLDY+WDTSP+EVQH V R+QIGLAREL Sbjct: 62 WHPVDAITMEDQDLDWIASLCSHDKVVAIGEIGLDYHWDTSPREVQHRVLRRQIGLAREL 121 Query: 123 KMPICIHNRDAHEDVVRILREEKANEIGGVMHSFSGSWETAKMCLDLGFHLSFGGPVTFK 182 MPI IHNRDAHED+V ILREEKA+E+GGVMHSFSGSWETAKMCLD+GFH+SFGGP+TFK Sbjct: 122 NMPIVIHNRDAHEDIVNILREEKASEVGGVMHSFSGSWETAKMCLDMGFHISFGGPITFK 181 Query: 183 NARVPKEVLAQTPMDRLLIETDSPYLTPHPFRGKRNESAYVKLVAEAAAEIKGIDLQELA 242 NA+ PKEVLA+ P+DRLLIETD+PYLTPHPFRGKRNE+AYVKLVAEAAAEI+G+ +ELA Sbjct: 182 NAKQPKEVLAKVPLDRLLIETDAPYLTPHPFRGKRNETAYVKLVAEAAAEIRGLSYEELA 241 Query: 243 EITYANALERFGI 255 +IT NALERFGI Sbjct: 242 QITTKNALERFGI 254 >B1DIJ3.1 B1DIJ3_9BACL Hydrolase, TatD family Length = 257 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 197/256 (76%), Positives = 223/256 (87%) Query: 1 MRLFDTHTHLDAPQFDEDRAGVIARALEAGVSKMINIGFNRETIPTTMKLAETYDYIYAA 60 + LFDTHTHLD+PQFD DRA VI RA AGV MINIGFNRETIPTTM+LAE YD+IYAA Sbjct: 2 ISLFDTHTHLDSPQFDNDRAEVIERARAAGVDLMINIGFNRETIPTTMELAEKYDFIYAA 61 Query: 61 VGWHPVDAIDMKEGDMDWIASLCSHKKVVAIGEIGLDYYWDTSPKEVQHEVFRKQIGLAR 120 VGWHPVD++ M+ GD++WI LCSH KVVAIGEIGLDY+WD SPK+VQH VFR+QI LAR Sbjct: 62 VGWHPVDSVFMEPGDLEWIEQLCSHPKVVAIGEIGLDYHWDNSPKDVQHRVFREQIRLAR 121 Query: 121 ELKMPICIHNRDAHEDVVRILREEKANEIGGVMHSFSGSWETAKMCLDLGFHLSFGGPVT 180 +L PI IHNRDAHED+VRILREEKA+E+GGVMH +SGSWETAKMCLD+ F++SFGGPVT Sbjct: 122 KLGKPIVIHNRDAHEDIVRILREEKASEVGGVMHCYSGSWETAKMCLDMNFYISFGGPVT 181 Query: 181 FKNARVPKEVLAQTPMDRLLIETDSPYLTPHPFRGKRNESAYVKLVAEAAAEIKGIDLQE 240 FKNARVPKEVLA+ P+DRLLIETDSPYL+PHPFRGKRNESAYV LVAEAAAEI G +E Sbjct: 182 FKNARVPKEVLAKVPLDRLLIETDSPYLSPHPFRGKRNESAYVSLVAEAAAEITGKSKEE 241 Query: 241 LAEITYANALERFGIV 256 +A IT AN + FGIV Sbjct: 242 IAVITSANGKKCFGIV 257 >C0ZHC3.1 C0ZHC3_BREBN Putative deoxyribonuclease EC=3.1.21.- Length = 256 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 164/251 (65%), Positives = 199/251 (79%) Query: 3 LFDTHTHLDAPQFDEDRAGVIARALEAGVSKMINIGFNRETIPTTMKLAETYDYIYAAVG 62 LF+TH HL+A +FDEDRA VIARA E GVS ++NIGFN ETIP+ M LA YD+IYA +G Sbjct: 2 LFETHAHLNANEFDEDRAEVIARAQENGVSTIVNIGFNAETIPSCMDLAHAYDFIYAVIG 61 Query: 63 WHPVDAIDMKEGDMDWIASLCSHKKVVAIGEIGLDYYWDTSPKEVQHEVFRKQIGLAREL 122 WHP DA DM + ++WI L KVV +GE+GLDYYWDTSP++VQ EVFRKQI LAR+L Sbjct: 62 WHPQDAKDMTDEHLEWIEELSRDPKVVGLGEMGLDYYWDTSPRDVQAEVFRKQIRLARKL 121 Query: 123 KMPICIHNRDAHEDVVRILREEKANEIGGVMHSFSGSWETAKMCLDLGFHLSFGGPVTFK 182 MPI IHNRDAH+DV+ IL+EEKA ++GG+MH FSGSWETAK LD+ F++SFGGP+TFK Sbjct: 122 DMPIIIHNRDAHQDVLTILKEEKAADVGGIMHCFSGSWETAKQALDMNFYISFGGPLTFK 181 Query: 183 NARVPKEVLAQTPMDRLLIETDSPYLTPHPFRGKRNESAYVKLVAEAAAEIKGIDLQELA 242 NA+ PKEV A+ P+D+LLIETD PYLTPHPFRGKRNES YV+ V E A I G+ +E+A Sbjct: 182 NAKQPKEVAAKVPLDKLLIETDCPYLTPHPFRGKRNESGYVRYVCEEMANIHGLSYEEMA 241 Query: 243 EITYANALERF 253 +IT NA F Sbjct: 242 QITADNARRLF 252 >Q65PI2.1 Q65PI2_BACLD YabD Length = 255 Score = 351 bits (900), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 164/253 (64%), Positives = 201/253 (79%) Query: 3 LFDTHTHLDAPQFDEDRAGVIARALEAGVSKMINIGFNRETIPTTMKLAETYDYIYAAVG 62 LFDTH HL+A QF+ED VIARA E V ++ +GF+R TI M+L E YD+IYAA+G Sbjct: 2 LFDTHAHLNAEQFNEDLEEVIARAKEEKVEHIVVVGFDRPTIKRAMELIEEYDFIYAAIG 61 Query: 63 WHPVDAIDMKEGDMDWIASLCSHKKVVAIGEIGLDYYWDTSPKEVQHEVFRKQIGLAREL 122 WHPVDAIDM + D+ WI L +H+KVVAIGE+GLDY+WD SPK+VQ EVFRKQI LA+E+ Sbjct: 62 WHPVDAIDMTDEDLAWIKDLSAHEKVVAIGEMGLDYHWDKSPKDVQKEVFRKQIALAKEV 121 Query: 123 KMPICIHNRDAHEDVVRILREEKANEIGGVMHSFSGSWETAKMCLDLGFHLSFGGPVTFK 182 +PI IHNRDA EDVV ILREE A E+GG+MH ++GS E A+ C+D+ F+LSFGGPVTFK Sbjct: 122 GLPIVIHNRDATEDVVSILREEGAEEVGGIMHCYTGSAEIAQECIDMNFYLSFGGPVTFK 181 Query: 183 NARVPKEVLAQTPMDRLLIETDSPYLTPHPFRGKRNESAYVKLVAEAAAEIKGIDLQELA 242 NA+ PKEV+ Q P DRLLIETD PYLTPHP+RGKRNE +YVKLVAE AE+KG+ +E+A Sbjct: 182 NAKKPKEVVKQIPNDRLLIETDCPYLTPHPYRGKRNEPSYVKLVAEQIAELKGMTYEEIA 241 Query: 243 EITYANALERFGI 255 +T NA + FGI Sbjct: 242 AVTTENAKKLFGI 254 >C2YKJ3.1 C2YKJ3_BACCE Uncharacterized deoxyribonuclease yabD Length = 256 Score = 348 bits (892), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 161/255 (63%), Positives = 200/255 (78%) Query: 1 MRLFDTHTHLDAPQFDEDRAGVIARALEAGVSKMINIGFNRETIPTTMKLAETYDYIYAA 60 M LFDTH+HL+A QF+ED VIAR EAGV+ + +GF+ TI ++LAE YD+IYAA Sbjct: 1 MMLFDTHSHLNAEQFEEDLQEVIARMKEAGVTYTVVVGFDEVTIKKALELAEAYDFIYAA 60 Query: 61 VGWHPVDAIDMKEGDMDWIASLCSHKKVVAIGEIGLDYYWDTSPKEVQHEVFRKQIGLAR 120 VGWHPVDAIDM E + W+ L SH KVVA+GE+GLDY+WD SPKE+Q EVFRKQI LA+ Sbjct: 61 VGWHPVDAIDMTEEHLAWLEELASHPKVVALGEMGLDYHWDKSPKEIQKEVFRKQIALAK 120 Query: 121 ELKMPICIHNRDAHEDVVRILREEKANEIGGVMHSFSGSWETAKMCLDLGFHLSFGGPVT 180 ++K+PI IHNRDA +D+V IL EE A E+GG+MH FSGS E A+ C+D+ F +S GGPVT Sbjct: 121 KVKLPIIIHNRDATQDIVDILEEENAAEVGGIMHCFSGSVEVAERCVDMNFLISLGGPVT 180 Query: 181 FKNARVPKEVLAQTPMDRLLIETDSPYLTPHPFRGKRNESAYVKLVAEAAAEIKGIDLQE 240 FKNA+ PKEV A+ P+++LLIETD PYLTPHPFRGKRNE +YVKLVAE A +KGI +E Sbjct: 181 FKNAKKPKEVAAEIPLEKLLIETDCPYLTPHPFRGKRNEPSYVKLVAEEIANLKGISYEE 240 Query: 241 LAEITYANALERFGI 255 +AE+T NA FG+ Sbjct: 241 VAEVTTKNAKALFGV 255 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,545,441,074 Number of extensions: 64093366 Number of successful extensions: 149323 Number of sequences better than 1.0e-05: 2630 Number of HSP's gapped: 144756 Number of HSP's successfully gapped: 2630 Length of query: 256 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 123 Effective length of database: 1,807,701,208 Effective search space: 222347248584 Effective search space used: 222347248584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)