BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0267.0015.p (300 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8W4.1 B3K8W4_9BACI Uroporphyrin-III C/tetrapyrrole (Corrin/Po... 424 e-117 B1DIJ6.1 B1DIJ6_9BACL Uroporphyrin-III C/tetrapyrrole (Corrin/Po... 344 7e-93 C0ZHB9.1 C0ZHB9_BREBN Putative uncharacterized protein yabC 322 3e-86 Q9KGL2.1 Y049_BACHD UPF0011 protein BH0049 308 3e-82 Q5L3W4.1 Q5L3W4_GEOKA Hypothetical conserved protein 303 1e-80 >B3K8W4.1 B3K8W4_9BACI Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Length = 297 Score = 424 bits (1089), Expect = e-117, Method: Compositional matrix adjust. Identities = 214/297 (72%), Positives = 237/297 (79%), Gaps = 3/297 (1%) Query: 1 MTILWQSSFQNRNENQPEATGSLYLVATPIGNLEDMTYRAVRTLRECDIIAAEDTRQTRK 60 M L Q S+ +R P GSLYLVATPIGNLED+TYRAVR L+ECDIIAAEDTRQ+RK Sbjct: 1 MRNLVQQSYADRGAGSP---GSLYLVATPIGNLEDITYRAVRILQECDIIAAEDTRQSRK 57 Query: 61 LLSHFEITSSMLFSYHEHNKAASGPELIRYIIEGKNLALVSDAGLPAISDPGADLVALAV 120 LL+HFEI + LFSYHEHNKAASGPE+IRYIIEGKN+ALVSDAGLPAISDPG+DLV+LA+ Sbjct: 58 LLTHFEIPAKPLFSYHEHNKAASGPEIIRYIIEGKNVALVSDAGLPAISDPGSDLVSLAI 117 Query: 121 SHGIPVIPIPGANAALSALIASGLPTTSFTFIGFLPRERKDIRSVLSGLRSAQGTLLFYE 180 GI VIPIPGANAALSALI SGLPT FTFIGFLPRERKDI L L+SAQGTLLFYE Sbjct: 118 EAGISVIPIPGANAALSALIVSGLPTERFTFIGFLPRERKDIVQQLQALQSAQGTLLFYE 177 Query: 181 SPHRVSKTLAHLQEAFGNRRIVLARELTKRYEEFLRGTIEECLDWLSEHPPLGEYVIVXX 240 SPHRV KTL LQE GNR++ LARELTKRYEEF+RG+I ECLDWL+EHPPLGEY +V Sbjct: 178 SPHRVKKTLEILQEVLGNRKVTLARELTKRYEEFVRGSISECLDWLTEHPPLGEYCLVVE 237 Query: 241 XXXXXXXXXXXXXXXXXLSIEEHVTHYETSGQTRKDAMKKAASDRGLAKRDIYNALL 297 LS+EEHV HYE G +RKDAMKK A DRG++KRDIYNALL Sbjct: 238 AGSAEEEQKEKNAWWQELSLEEHVGHYEREGLSRKDAMKKTAGDRGVSKRDIYNALL 294 >B1DIJ6.1 B1DIJ6_9BACL Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase Length = 295 Score = 344 bits (882), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 176/293 (60%), Positives = 213/293 (72%), Gaps = 6/293 (2%) Query: 6 QSSFQNRNENQPEATGSLYLVATPIGNLEDMTYRAVRTLRECDIIAAEDTRQTRKLLSHF 65 Q SF+++ N G LYLV TPIGNLEDMTYRA+RTL+E +IAAEDTRQTRKLL+HF Sbjct: 5 QKSFKDQANND---YGILYLVGTPIGNLEDMTYRAIRTLKEVQLIAAEDTRQTRKLLTHF 61 Query: 66 EITSSMLFSYHEHNKAASGPELIRYIIEGKNLALVSDAGLPAISDPGADLVALAVSHGIP 125 EI S+ L SYHEHNK ASG ELIR +IEG+++ALVSDAGLPA+SDPGADLV AV GI Sbjct: 62 EI-STRLVSYHEHNKQASGSELIRLLIEGQSIALVSDAGLPAVSDPGADLVKDAVEAGIK 120 Query: 126 VIPIPGANAALSALIASGLPTTSFTFIGFLPRERKDIRSVLSGLRSAQGTLLFYESPHRV 185 V+PIPGANAALSALI SGLPT F F GF PR++K + L+ L +GTL+ YESPHR+ Sbjct: 121 VVPIPGANAALSALIISGLPTDRFVFTGFPPRDKKPLAEWLTRLVRQEGTLMMYESPHRL 180 Query: 186 SKTLAHLQEAFGNRRIVLARELTKRYEEFLRGTIEECLDWLSEHPPLGEYVIVXXXXXXX 245 KTL + E +G+RRI + RELTKR+EE RG+I ECL +L E+PPLGEY ++ Sbjct: 181 KKTLDAMLEHWGDRRIAMVRELTKRHEEAARGSISECLAFLEENPPLGEYCLIIEGAAAG 240 Query: 246 XXXXXXXXXX--XXLSIEEHVTHYETSGQTRKDAMKKAASDRGLAKRDIYNAL 296 L +EEHV HYE G RK+A+KKAA DRGL KR++YNA+ Sbjct: 241 AGDSGDNGETWWASLELEEHVAHYENEGIDRKEAIKKAAQDRGLPKREVYNAV 293 >C0ZHB9.1 C0ZHB9_BREBN Putative uncharacterized protein yabC Length = 290 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 161/277 (58%), Positives = 198/277 (71%), Gaps = 1/277 (0%) Query: 18 EATGSLYLVATPIGNLEDMTYRAVRTLRECDIIAAEDTRQTRKLLSHFEITSSMLFSYHE 77 E G LYLVATPIGNL+D+T R + TLRE D+IA EDTRQTRKLL+HF+I + SYHE Sbjct: 10 EEAGVLYLVATPIGNLDDITVRCLNTLREVDVIACEDTRQTRKLLNHFQIEKRTV-SYHE 68 Query: 78 HNKAASGPELIRYIIEGKNLALVSDAGLPAISDPGADLVALAVSHGIPVIPIPGANAALS 137 HNK ASG L++++ EGK +ALVSDAGLPAISDPGA+LV A + G VIP+PGANAAL+ Sbjct: 69 HNKEASGNGLLQWLAEGKKIALVSDAGLPAISDPGAELVRDATAAGFSVIPVPGANAALT 128 Query: 138 ALIASGLPTTSFTFIGFLPRERKDIRSVLSGLRSAQGTLLFYESPHRVSKTLAHLQEAFG 197 ALIASGLPT F F GF+ RE K+ R L L+ TL+FYE+PHRV KTLA ++EA+G Sbjct: 129 ALIASGLPTDRFVFCGFMGRENKERREELERLKRYPETLIFYEAPHRVEKTLAAMREAWG 188 Query: 198 NRRIVLARELTKRYEEFLRGTIEECLDWLSEHPPLGEYVIVXXXXXXXXXXXXXXXXXXX 257 NRR VLARELTKRYEEF RGT++E L+WL GE+ ++ Sbjct: 189 NRRAVLARELTKRYEEFARGTLDELLEWLRSGEVRGEFCVIVEGNTGPLEAEVDDAWWQS 248 Query: 258 LSIEEHVTHYETSGQTRKDAMKKAASDRGLAKRDIYN 294 LSI EHV HY G +K+A+K+AA DR ++KRD+YN Sbjct: 249 LSIVEHVDHYCAQGMGKKEAIKQAADDRNVSKRDVYN 285 >Q9KGL2.1 Y049_BACHD UPF0011 protein BH0049 Length = 289 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 158/289 (54%), Positives = 199/289 (68%), Gaps = 8/289 (2%) Query: 6 QSSFQNRNENQPEATGSLYLVATPIGNLEDMTYRAVRTLRECDIIAAEDTRQTRKLLSHF 65 Q S+Q R++ G+LYLVATPIGNLED+T+RA+RTL+E D IAAEDTRQT+KLL+HF Sbjct: 4 QQSYQQRDDK-----GTLYLVATPIGNLEDVTFRAIRTLKEADQIAAEDTRQTKKLLNHF 58 Query: 66 EITSSMLFSYHEHNKAASGPELIRYIIEGKNLALVSDAGLPAISDPGADLVALAVSHGIP 125 +I ++ L SYHEHNK G LI +IEG+ +ALVSDAG+PAISDPG +LV A+ GI Sbjct: 59 DI-ATKLVSYHEHNKETMGKRLIDDLIEGRTIALVSDAGMPAISDPGYELVVSAIKEGIA 117 Query: 126 VIPIPGANAALSALIASGLPTTSFTFIGFLPRERKDIRSVLSGLRSAQGTLLFYESPHRV 185 VIPIPGANAA++ALIASGLPT SF FIGFLPR++K R L + + TL+FYESPHR+ Sbjct: 118 VIPIPGANAAVTALIASGLPTESFQFIGFLPRQKKQRRQALEETKPTKATLIFYESPHRL 177 Query: 186 SKTLAHLQEAFGNRRIVLARELTKRYEEFLRGTIEECLDWLSEHPPLGEYVIVXXXXXXX 245 TL + GNR + + RELTK YEEFLRGT+EE + W E GE+ ++ Sbjct: 178 KDTLDDMLLILGNRHVSICRELTKTYEEFLRGTLEEAVHWAREATIKGEFCLI--VEGNG 235 Query: 246 XXXXXXXXXXXXLSIEEHVTHYETSGQTRKDAMKKAASDRGLAKRDIYN 294 LS +HV HY G K+A+K+ A+DRG+ KRDIYN Sbjct: 236 EKVEPEEVWWESLSPVQHVEHYIALGFRSKEAIKQVATDRGVPKRDIYN 284 >Q5L3W4.1 Q5L3W4_GEOKA Hypothetical conserved protein Length = 303 Score = 303 bits (776), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 155/294 (52%), Positives = 207/294 (70%), Gaps = 9/294 (3%) Query: 3 ILWQS-SFQNRNENQPEATGSLYLVATPIGNLEDMTYRAVRTLRECDIIAAEDTRQTRKL 61 +LWQ SF + E G+LY+V TPIGNLEDMT+RAVRTL+E D+IAAEDTRQT+KL Sbjct: 1 MLWQQKSFTEQTEQ-----GTLYIVPTPIGNLEDMTFRAVRTLQEADVIAAEDTRQTKKL 55 Query: 62 LSHFEITSSMLFSYHEHNKAASGPELIRYIIEGKNLALVSDAGLPAISDPGADLVALAVS 121 L+HF I + L SYHEHNK ASG +L+ ++ EGK +ALVSDAG+P ISDPG +L+A A++ Sbjct: 56 LAHFGIHTP-LVSYHEHNKYASGRQLVEWLKEGKTVALVSDAGMPGISDPGYELIAAALA 114 Query: 122 HGIPVIPIPGANAALSALIASGLPTTSFTFIGFLPRERKDIRSVLSGLRSAQGTLLFYES 181 V+P+PGANAAL+AL+ASGLPT F F+GFL R +K+ + L L++A TL+FYE+ Sbjct: 115 ERCRVVPLPGANAALTALVASGLPTDRFLFVGFLKRAKKEKKEQLLSLKTAAETLIFYEA 174 Query: 182 PHRVSKTLAHLQEAFGNRRIVLARELTKRYEEFLRGTIEECLDWLSEHPPLGEY-VIVXX 240 PHR+ +TLA + + FGNRRI L RELTKR+EEF+RG + + + W EH GE+ +IV Sbjct: 175 PHRLKETLALMYDIFGNRRIALGRELTKRFEEFIRGDLSDAVAWAEEHDIRGEFCLIVEG 234 Query: 241 XXXXXXXXXXXXXXXXXLSIEEHVTHY-ETSGQTRKDAMKKAASDRGLAKRDIY 293 LS+ EHV +Y + K+A+K+AASDR ++KRD+Y Sbjct: 235 ARDGKKQEQEGEEWWQPLSLVEHVDYYIREHSLSVKEAVKQAASDRNMSKRDVY 288 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,596,217,124 Number of extensions: 58739565 Number of successful extensions: 208472 Number of sequences better than 1.0e-05: 1685 Number of HSP's gapped: 205670 Number of HSP's successfully gapped: 1688 Length of query: 300 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 165 Effective length of database: 1,788,859,178 Effective search space: 295161764370 Effective search space used: 295161764370 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)