BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0267.0014.p (266 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DIJ7.1 B1DIJ7_9BACL Methyltransferase small 318 2e-85 C0ZHB7.1 C0ZHB7_BREBN Putative uncharacterized protein yabB 302 2e-80 A4IJB0.1 A4IJB0_GEOTN Methyltransferase 275 2e-72 B4BS04.1 B4BS04_9BACI Methyltransferase small 275 2e-72 C1PDV0.1 C1PDV0_BACCO Methyltransferase small 273 9e-72 >B1DIJ7.1 B1DIJ7_9BACL Methyltransferase small Length = 251 Score = 318 bits (816), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 151/229 (65%), Positives = 184/229 (80%), Gaps = 1/229 (0%) Query: 17 EPVPLHPAERVDDLLTHD-LRIIQSDEVFSFSMDAVLLARFASVPPRGRVLDLCTGNGVI 75 + V L P ER+DDL+T L IIQS EVFSFS+DAVLL++FA++P RGR+LDLCTGNGVI Sbjct: 22 QEVKLEPNERIDDLMTETGLHIIQSREVFSFSLDAVLLSKFATIPKRGRILDLCTGNGVI 81 Query: 76 PMLLTTRTKASIEGIEIQPRLADMARRSVVMNNLGERVTIHEGDLRELHLTAGYGVYDAI 135 PMLLTTRT A I+ +EIQPRLADMARRSV MNNL E+V+I EGDL+ AG G+YDA+ Sbjct: 82 PMLLTTRTDARIDAVEIQPRLADMARRSVAMNNLSEQVSIIEGDLKIFMKEAGNGIYDAV 141 Query: 136 TVNPPYMPLNGSDLKLNSHQAMARHELGCTLEEVIQACVRLVRTGGKVSMVHKPQRLVDI 195 TVNPPYM + D N H A+ARHE+ CTL++V+ AC RLVR+GGKV+MVH+P R +DI Sbjct: 142 TVNPPYMAVKAGDSNENDHYAIARHEIHCTLDDVVHACARLVRSGGKVAMVHRPSRFIDI 201 Query: 196 ISLMRQYRLEPKLIRFVHPRAHLEANMVLIEAARDGKPEVRLQPPLIVY 244 + MR+YRLEPK ++F+HP A EANMVLIEA RDGKPE+RL PP+ VY Sbjct: 202 METMRKYRLEPKRVQFIHPNAQGEANMVLIEAIRDGKPELRLLPPVFVY 250 >C0ZHB7.1 C0ZHB7_BREBN Putative uncharacterized protein yabB Length = 255 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 142/246 (57%), Positives = 189/246 (76%), Gaps = 1/246 (0%) Query: 19 VPLHPAERVDDLLTHDLRIIQSDEVFSFSMDAVLLARFASVPPRGRVLDLCTGNGVIPML 78 VPL+ ER+DDLLTH+++IIQS EVF FSMDAVLLARFASVP RG+VLD+CTGNG IP++ Sbjct: 7 VPLYETERIDDLLTHEMKIIQSHEVFCFSMDAVLLARFASVPKRGKVLDMCTGNGAIPLI 66 Query: 79 LTTRT-KASIEGIEIQPRLADMARRSVVMNNLGERVTIHEGDLRELHLTAGYGVYDAITV 137 +TTRT +AS +GIEIQ RL MA R+V +N L ER+T+H GD+++ G+G +D IT Sbjct: 67 MTTRTPEASFDGIEIQERLFSMASRNVTLNGLNERITMHHGDVKDAVSLFGHGNFDLITC 126 Query: 138 NPPYMPLNGSDLKLNSHQAMARHELGCTLEEVIQACVRLVRTGGKVSMVHKPQRLVDIIS 197 NPPYMP + ++ H A+ARHE+ +LE+VI+ +L++ GGK+++VH+ RL+DI+S Sbjct: 127 NPPYMPATSGEKNISEHFAIARHEIMLSLEDVIRVGSQLLKNGGKLALVHRSTRLIDIVS 186 Query: 198 LMRQYRLEPKLIRFVHPRAHLEANMVLIEAARDGKPEVRLQPPLIVYNEDNQYCPEILDI 257 LMRQY +EPK +R V+PR E NMVLIE R GKPE+R+QPPLIVY QYC E+ +I Sbjct: 187 LMRQYGIEPKRMRLVYPRREAEPNMVLIEGIRGGKPELRIQPPLIVYENGEQYCEELQEI 246 Query: 258 YYGAKE 263 YYG ++ Sbjct: 247 YYGRRD 252 >A4IJB0.1 A4IJB0_GEOTN Methyltransferase Length = 249 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/244 (54%), Positives = 178/244 (72%), Gaps = 2/244 (0%) Query: 19 VPLHPAERVDDLLTHDLRIIQSDEVFSFSMDAVLLARFASVP-PRGRVLDLCTGNGVIPM 77 V L+ ER+D L +LRIIQS VFSFS+DAVLLA FA +P +G+++DLCTGNGVIP+ Sbjct: 2 VELYGDERLDYLFNEELRIIQSPSVFSFSLDAVLLAHFAYLPIQKGQIVDLCTGNGVIPL 61 Query: 78 LLTTRTKASIEGIEIQPRLADMARRSVVMNNLGERVTIHEGDLRELHLTAGYGVYDAITV 137 LL+ RTK +I GIEIQ RL DMARRS+ N L E++ I GD++E GY YD +T Sbjct: 62 LLSQRTKGTIIGIEIQERLCDMARRSIQYNGLEEQIEIIHGDIKEAPQQIGYSRYDVVTC 121 Query: 138 NPPYMPLNGSD-LKLNSHQAMARHELGCTLEEVIQACVRLVRTGGKVSMVHKPQRLVDII 196 NPPY P G D L N H A+ARHE+ CTLE+ ++ +L++ GGK + VH+P RL+DI+ Sbjct: 122 NPPYFPTAGQDELSKNEHLAIARHEIYCTLEDAVRVSSQLLKQGGKAAFVHRPGRLLDIV 181 Query: 197 SLMRQYRLEPKLIRFVHPRAHLEANMVLIEAARDGKPEVRLQPPLIVYNEDNQYCPEILD 256 LMRQYRLEPK +RFV+P+A EANM+LIE +D P++++ PPL+VY+E+N+Y E+ Sbjct: 182 MLMRQYRLEPKRLRFVYPKAGKEANMILIEGMKDASPDLKVLPPLVVYDENNEYTEEMKR 241 Query: 257 IYYG 260 I YG Sbjct: 242 ILYG 245 >B4BS04.1 B4BS04_9BACI Methyltransferase small Length = 249 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/244 (54%), Positives = 178/244 (72%), Gaps = 2/244 (0%) Query: 19 VPLHPAERVDDLLTHDLRIIQSDEVFSFSMDAVLLARFASVP-PRGRVLDLCTGNGVIPM 77 V L+ ER+D L +LRIIQS VFSFS+DAVLLA FA +P +G+++DLCTGNGVIP+ Sbjct: 2 VELYGDERLDYLFNEELRIIQSPSVFSFSLDAVLLAHFAYLPIQKGQIVDLCTGNGVIPL 61 Query: 78 LLTTRTKASIEGIEIQPRLADMARRSVVMNNLGERVTIHEGDLRELHLTAGYGVYDAITV 137 LL+ RTK +I GIEIQ RL DMARRS+ N L E++ I GD++E GY YD +T Sbjct: 62 LLSQRTKGTIIGIEIQERLCDMARRSIQYNGLEEQIEIIHGDIKEAPQQIGYSRYDVVTC 121 Query: 138 NPPYMPLNGSD-LKLNSHQAMARHELGCTLEEVIQACVRLVRTGGKVSMVHKPQRLVDII 196 NPPY P G D L N H A+ARHE+ CTLE+ ++ +L++ GGK + VH+P RL+DI+ Sbjct: 122 NPPYFPTAGQDELSKNEHLAIARHEIYCTLEDAVRVSSQLLKQGGKAAFVHRPGRLLDIV 181 Query: 197 SLMRQYRLEPKLIRFVHPRAHLEANMVLIEAARDGKPEVRLQPPLIVYNEDNQYCPEILD 256 LMRQYRLEPK +RFV+P+A EANM+LIE +D P++++ PPL+VY+E+N+Y E+ Sbjct: 182 MLMRQYRLEPKRLRFVYPKAGKEANMILIEGMKDASPDLKVLPPLVVYDENNEYTEEMKR 241 Query: 257 IYYG 260 I YG Sbjct: 242 ILYG 245 >C1PDV0.1 C1PDV0_BACCO Methyltransferase small Length = 248 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 129/246 (52%), Positives = 182/246 (73%), Gaps = 2/246 (0%) Query: 19 VPLHPAERVDDLLTHDLRIIQSDEVFSFSMDAVLLARFASVP-PRGRVLDLCTGNGVIPM 77 V L ER+D LL +LRI+QS VF+FS+DAVLLA+FA +P +G+VLDLCTGNGVIP+ Sbjct: 2 VTLSGDERLDYLLAENLRIVQSPSVFAFSLDAVLLAKFAWLPIQKGKVLDLCTGNGVIPL 61 Query: 78 LLTTRTKASIEGIEIQPRLADMARRSVVMNNLGERVTIHEGDLRELHLTAGYGVYDAITV 137 LL+ RTKA I G+EIQ RL+DMA+RSV N L +R+ I GDL+E+ G +D +T Sbjct: 62 LLSNRTKAEITGVEIQERLSDMAKRSVAYNGLEDRIRIIHGDLKEMPDVLGCSKFDVVTC 121 Query: 138 NPPYMPLNGSDLK-LNSHQAMARHELGCTLEEVIQACVRLVRTGGKVSMVHKPQRLVDII 196 NPPY P +++ N H A+ARHE+ CTLE+V++ R+++ GGK + VH+P RLVD+I Sbjct: 122 NPPYFPSQTKNIQNENEHFAIARHEIFCTLEDVVKVSSRMLKQGGKAAFVHRPGRLVDLI 181 Query: 197 SLMRQYRLEPKLIRFVHPRAHLEANMVLIEAARDGKPEVRLQPPLIVYNEDNQYCPEILD 256 +LM+++RLEPK +RFV+P+A EAN +L+E +DGKP++++ PPL VY +D +Y E+ + Sbjct: 182 TLMKKHRLEPKRLRFVYPKAGKEANTILVEGIKDGKPDLKIFPPLFVYGQDGEYTEEVKE 241 Query: 257 IYYGAK 262 + YG K Sbjct: 242 LLYGNK 247 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,619,076,410 Number of extensions: 65310327 Number of successful extensions: 149882 Number of sequences better than 1.0e-05: 703 Number of HSP's gapped: 149339 Number of HSP's successfully gapped: 704 Length of query: 266 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 133 Effective length of database: 1,807,701,208 Effective search space: 240424260664 Effective search space used: 240424260664 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)