BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0013.p
         (121 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8W0.1 B3K8W0_9BACI Putative uncharacterized protein                150   4e-35
C2PPQ6.1 C2PPQ6_BACCE Initiation-control protein yabA                 110   3e-23
C2W2Q3.1 C2W2Q3_BACCE Initiation-control protein yabA                 110   4e-23
C3BEF6.1 C3BEF6_9BACI Initiation-control protein yabA                 110   5e-23
C3AG31.1 C3AG31_BACMY Initiation-control protein yabA                 110   5e-23

>B3K8W0.1 B3K8W0_9BACI Putative uncharacterized protein
          Length = 122

 Score =  150 bits (378), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 77/122 (63%), Positives = 87/122 (71%), Gaps = 1/122 (0%)

Query: 1   LEKMNIFAHMQEMEAQMESMRASLGEWKLTVKELMEANQRLSLENEQLRKILKREA-PLD 59
           +EK NIF  +QE+E QM  + + LG  KL +KEL+E N RLSLENEQLRKILKRE  P +
Sbjct: 1   MEKKNIFVLIQELETQMGHIHSELGGLKLVIKELLEENHRLSLENEQLRKILKREVNPAE 60

Query: 60  PVAHXXXXXXXXXXXXXXXXVVGEGYDNLARLYHEGFHICNVYFGHLRTEGDCLFCLSFL 119
             +                 VVGEGYDNLARLYHEGFHICNVY+GHLRTEGDCLFCLSFL
Sbjct: 61  LESPVALQPQPHVKDEEHEDVVGEGYDNLARLYHEGFHICNVYYGHLRTEGDCLFCLSFL 120

Query: 120 NK 121
           NK
Sbjct: 121 NK 122


>C2PPQ6.1 C2PPQ6_BACCE Initiation-control protein yabA
          Length = 116

 Score =  110 bits (276), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 6/121 (4%)

Query: 1   LEKMNIFAHMQEMEAQMESMRASLGEWKLTVKELMEANQRLSLENEQLRKILKREAPLDP 60
           +EK +IFA +  ME Q+  +   LGE K  + EL+E NQ + +ENE LR         + 
Sbjct: 1   MEKKDIFASVSSMEEQIGHLYKQLGELKQHLAELLEENQHIKMENENLR------HRFEE 54

Query: 61  VAHXXXXXXXXXXXXXXXXVVGEGYDNLARLYHEGFHICNVYFGHLRTEGDCLFCLSFLN 120
           V +                 +GEGYDNLARLY EGFHICN+++G +R EGDCLFCLSFLN
Sbjct: 55  VQNKEKQKTQKRKEMKAKTDIGEGYDNLARLYQEGFHICNLHYGSVRKEGDCLFCLSFLN 114

Query: 121 K 121
           K
Sbjct: 115 K 115


>C2W2Q3.1 C2W2Q3_BACCE Initiation-control protein yabA
          Length = 118

 Score =  110 bits (275), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 6/121 (4%)

Query: 1   LEKMNIFAHMQEMEAQMESMRASLGEWKLTVKELMEANQRLSLENEQLRKILKREAPLDP 60
           +EK +IFA +  ME Q+  +   LGE K  + EL+E NQ + +ENE LR+        + 
Sbjct: 3   VEKKDIFAAVSSMEEQIGHLYKQLGELKQHLAELLEENQHIKMENENLRR------RFEE 56

Query: 61  VAHXXXXXXXXXXXXXXXXVVGEGYDNLARLYHEGFHICNVYFGHLRTEGDCLFCLSFLN 120
           V +                 +GEGYDNLARLY EGFHICN+++G +R EGDCLFCLSFLN
Sbjct: 57  VQNKEKQKTQKRKEMKPKTDIGEGYDNLARLYQEGFHICNLHYGSVRKEGDCLFCLSFLN 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>C3BEF6.1 C3BEF6_9BACI Initiation-control protein yabA
          Length = 118

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 6/121 (4%)

Query: 1   LEKMNIFAHMQEMEAQMESMRASLGEWKLTVKELMEANQRLSLENEQLRKILKREAPLDP 60
           +EK +IFA +  ME Q+  +   LGE K  + EL+E NQ + +ENE LR+        + 
Sbjct: 3   VEKKDIFAAVSSMEEQIGHLYKQLGELKQHLAELLEENQHIKMENENLRR------RFEE 56

Query: 61  VAHXXXXXXXXXXXXXXXXVVGEGYDNLARLYHEGFHICNVYFGHLRTEGDCLFCLSFLN 120
           + +                 +GEGYDNLARLY EGFHICN+++G +R EGDCLFCLSFLN
Sbjct: 57  IQNKEKQKTQKRKEMKPKTDIGEGYDNLARLYQEGFHICNLHYGSVRKEGDCLFCLSFLN 116

Query: 121 K 121
           K
Sbjct: 117 K 117


>C3AG31.1 C3AG31_BACMY Initiation-control protein yabA
          Length = 118

 Score =  110 bits (274), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 6/121 (4%)

Query: 1   LEKMNIFAHMQEMEAQMESMRASLGEWKLTVKELMEANQRLSLENEQLRKILKREAPLDP 60
           +EK +IFA +  ME Q+  +   LGE K  + EL+E NQ + +ENE LR+        + 
Sbjct: 3   VEKKDIFAAVSSMEEQIGHLYKQLGELKQHLAELLEENQHIKMENENLRR------RFEE 56

Query: 61  VAHXXXXXXXXXXXXXXXXVVGEGYDNLARLYHEGFHICNVYFGHLRTEGDCLFCLSFLN 120
           + +                 +GEGYDNLARLY EGFHICN+++G +R EGDCLFCLSFLN
Sbjct: 57  IQNKEKQKTQKRKEMKPKTDIGEGYDNLARLYQEGFHICNLHYGSVRKEGDCLFCLSFLN 116

Query: 121 K 121
           K
Sbjct: 117 K 117


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 580,852,955
Number of extensions: 16851096
Number of successful extensions: 56695
Number of sequences better than 1.0e-05: 148
Number of HSP's gapped: 56642
Number of HSP's successfully gapped: 149
Length of query: 121
Length of database: 3,060,696,203
Length adjustment: 87
Effective length of query: 34
Effective length of database: 2,241,067,898
Effective search space: 76196308532
Effective search space used: 76196308532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)