BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0267.0011.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K8V8.1 B3K8V8_9BACI DNA polymerase III, delta prime subunit EC... 472 e-131 B1DIK0.1 B1DIK0_9BACL DNA polymerase III, delta prime subunit EC... 366 2e-99 C0ZHB4.1 C0ZHB4_BREBN DNA polymerase III delta' subunit EC=2.7.7.7 248 8e-64 Q2B0C3.1 Q2B0C3_9BACI DNA polymerase III subunit delta EC=2.7.7.7 215 5e-54 A8W216.1 A8W216_9BACI Dihydropteroate synthase EC=2.5.1.15 215 5e-54 >B3K8V8.1 B3K8V8_9BACI DNA polymerase III, delta prime subunit EC=2.7.7.7 Length = 328 Score = 472 bits (1215), Expect = e-131, Method: Compositional matrix adjust. Identities = 219/322 (68%), Positives = 268/322 (83%) Query: 5 MSFHDILGQEDAKRLLQNALRKDAVSHAYLFTGPSGSGQMKTALMFAQAIFCTTCEDDAC 64 MSF+DI+GQE AK+LLQNALR++AVSHAYLF+GP+G+GQM+TAL FA+A+FCT EDDAC Sbjct: 1 MSFNDIVGQETAKQLLQNALRRNAVSHAYLFSGPNGAGQMQTALTFAKALFCTEREDDAC 60 Query: 65 GECLECRKVEHGNHPDLSLLKPDGASIKIDQIRELQRMFSYRSEGVNPKVYIIEGADKMT 124 G+CLECRKVEHGNHPDL++++PDGASIKIDQIR+LQR+FSYRSE NPKVYII+ A+KMT Sbjct: 61 GQCLECRKVEHGNHPDLTMVEPDGASIKIDQIRDLQRIFSYRSENRNPKVYIIDRAEKMT 120 Query: 125 VQAANSLLKFLEEPPAPAVGILISDNSSSLLPTIQSRTQRIPFSPLHPEIMLQALSSEGV 184 QAANSLLKFLEEP APAV ILI++N +LLPT+QSR+Q +PF L P++M + L EG Sbjct: 121 TQAANSLLKFLEEPQAPAVAILIAENGQALLPTVQSRSQLVPFRALDPQMMEKVLVGEGY 180 Query: 185 PVPLARCAVSLTSGLDGCRELLAQNWFAEMRNLVLQLAKESLGKGSSAVATAGQKLFKTG 244 P L RCAV L SGLD CR++L +NWFAE+RN+VLQL KESL + SA+ TA QK+FKT Sbjct: 181 PAALVRCAVHLASGLDECRKILNENWFAEIRNVVLQLGKESLTRSGSAMITASQKVFKTE 240 Query: 245 LGEHLDILFSMFHLWFKDMLYFLYRKHESIVFIDQLDFISRHARQRSTEQWVAYMEFAAE 304 L +HLD+LFSMFHLWFKDM++ Y + ES+VFIDQ ++IS HA RST QWV+YM+ AAE Sbjct: 241 LSDHLDLLFSMFHLWFKDMIHVQYGRKESLVFIDQAEYISGHASARSTAQWVSYMDLAAE 300 Query: 305 SKGKLRSNANAQLCLEQFLIRL 326 + KLR N N QL LEQ L+ L Sbjct: 301 CQKKLRYNVNGQLSLEQLLMGL 322 >B1DIK0.1 B1DIK0_9BACL DNA polymerase III, delta prime subunit EC=2.7.7.7 Length = 325 Score = 366 bits (939), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 178/323 (55%), Positives = 229/323 (70%) Query: 5 MSFHDILGQEDAKRLLQNALRKDAVSHAYLFTGPSGSGQMKTALMFAQAIFCTTCEDDAC 64 MS + GQ AKR+L++AL+ VSHAYLF GPSG+G+ A FA+A+FCT+ DDAC Sbjct: 1 MSMEQVAGQWKAKRILKHALQSGKVSHAYLFYGPSGTGRKAMARAFAKALFCTSGGDDAC 60 Query: 65 GECLECRKVEHGNHPDLSLLKPDGASIKIDQIRELQRMFSYRSEGVNPKVYIIEGADKMT 124 CLECRK E+GN PDL + PDG SIKIDQIRELQR +YR G + KVYI+E A+ MT Sbjct: 61 DHCLECRKFENGNQPDLLTITPDGQSIKIDQIRELQRELAYRGSGASRKVYIVERAETMT 120 Query: 125 VQAANSLLKFLEEPPAPAVGILISDNSSSLLPTIQSRTQRIPFSPLHPEIMLQALSSEGV 184 +QAANSLLKFLEEP +P V ILI+DN ++LPTI+SR Q +PF P MLQ+L EG Sbjct: 121 LQAANSLLKFLEEPLSPIVAILITDNGQAVLPTIRSRAQWVPFLPFSASEMLQSLVDEGA 180 Query: 185 PVPLARCAVSLTSGLDGCRELLAQNWFAEMRNLVLQLAKESLGKGSSAVATAGQKLFKTG 244 LAR AV L+SGLDG RE++ QN FAE+RN+V+QL KESL + ++ + TA Q+ FKT Sbjct: 181 SPTLARAAVQLSSGLDGAREIIQQNQFAEIRNVVIQLGKESLTRFTAGMLTAQQQFFKTD 240 Query: 245 LGEHLDILFSMFHLWFKDMLYFLYRKHESIVFIDQLDFISRHARQRSTEQWVAYMEFAAE 304 L ++ S+ LWFKDM+ F + ESIV+IDQLD+IS+HA R E W+A +E E Sbjct: 241 LAGEAQLMLSLLVLWFKDMIQFQAGRQESIVYIDQLDWISKHAFNRPIESWIACIEHTLE 300 Query: 305 SKGKLRSNANAQLCLEQFLIRLE 327 + K+RSN + QL +EQ L+ L+ Sbjct: 301 AGKKIRSNVSPQLAVEQLLVNLQ 323 >C0ZHB4.1 C0ZHB4_BREBN DNA polymerase III delta' subunit EC=2.7.7.7 Length = 326 Score = 248 bits (632), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 133/324 (41%), Positives = 203/324 (62%), Gaps = 1/324 (0%) Query: 5 MSFHDILGQEDAKRLLQNALRKDAVSHAYLFTGPSGSGQMKTALMFAQAIFCTTCEDDAC 64 M++ Q A+ LL ++LR + ++HAYL GP GSG+ + AL A+++FC+ E DAC Sbjct: 1 MTWTRFSQQPRAQELLSHSLRNERLAHAYLLAGPKGSGKKQMALHLAKSLFCSEREADAC 60 Query: 65 GECLECRKVEHGNHPDLSLLKPDGASIKIDQIRELQRMFSYRSEGVNPKVYIIEGADKMT 124 G C+ CR+++ GNHPD+ + PDGASIKIDQIR LQ+ + R+ + KVYIIE DKMT Sbjct: 61 GACVTCRRIDGGNHPDVLFITPDGASIKIDQIRSLQKEMAMRAVESSRKVYIIEHVDKMT 120 Query: 125 VQAANSLLKFLEEPPAPAVGILISDNSSSLLPTIQSRTQRIPFSPLHPEIMLQALSSEGV 184 QAANSLLKFLEEPPA + +L++++S ++LPTI SR Q + FSPL E + + L +EGV Sbjct: 121 TQAANSLLKFLEEPPAGVLALLLTEHSHAILPTILSRCQIVQFSPLSAESIAEKLRAEGV 180 Query: 185 PVPLARCAVSLTSGLDGCRELLAQNWFAEMRNLVLQLAKESLGKGSSAVATAGQKLFKTG 244 +A+ A +T+ ++ L FA++RNLV+QL +E + SSA+ T L K+ Sbjct: 181 LAGMAQVASHITTNVEEAMTLSQSESFAQLRNLVIQLVQECKQRNSSALLTIHDMLQKSD 240 Query: 245 LG-EHLDILFSMFHLWFKDMLYFLYRKHESIVFIDQLDFISRHARQRSTEQWVAYMEFAA 303 E L + + LW +D+LY +H ++ DQ D + A + + + ++ Sbjct: 241 KSKEELPLFLDLLILWLRDILYLQVGRHAHLINSDQQDVLQGQALVWTKAELLRGIDLVM 300 Query: 304 ESKGKLRSNANAQLCLEQFLIRLE 327 E+K ++ NANAQL LE+ +++ + Sbjct: 301 ETKNRIERNANAQLALERLVLQFQ 324 >Q2B0C3.1 Q2B0C3_9BACI DNA polymerase III subunit delta EC=2.7.7.7 Length = 335 Score = 215 bits (548), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 122/314 (38%), Positives = 180/314 (57%), Gaps = 5/314 (1%) Query: 18 RLLQNALRKDAVSHAYLFTGPSGSGQMKTALMFAQAIFCTTCEDD--ACGECLECRKVEH 75 +L +N+++KD ++HAYLF G G+G+ L+ A+++FC E C +C CR++ Sbjct: 17 KLFKNSIQKDRLAHAYLFEGMRGTGKKDAGLLLAKSLFCERPEGGYIPCEDCTNCRRINS 76 Query: 76 GNHPDLSLLKPDGASIKIDQIRELQRMFSYRSEGVNPKVYIIEGADKMTVQAANSLLKFL 135 GNHPD+ LL+PDG SIK QI+ LQ FS K+Y+I ADKMTV AANSLLKFL Sbjct: 77 GNHPDIHLLEPDGLSIKKHQIQALQEEFSKTGVESKRKLYMINHADKMTVNAANSLLKFL 136 Query: 136 EEPPAPAVGILISDNSSSLLPTIQSRTQRIPFSPLHPEIMLQALSSEGVPVPLARCAVSL 195 EEP + +V IL+++ +LPTI SR Q I F PL P+ M L+ GV +A L Sbjct: 137 EEPNSDSVAILMTEQGQRMLPTILSRCQTISFIPLTPQNMEMQLAENGVSPQMAPLLAQL 196 Query: 196 TSGLDGCRELLAQNWFAEMRNLVLQLAKESLGKG--SSAVATAGQKLFKTGLGEHLDILF 253 T+ LD L + +WFA+ + +VL+L E L K + VA + E D Sbjct: 197 TNNLDEAIALSSDDWFAQAQKIVLKLY-EVLKKNPLEAMVALQEEWFLHFKEKEQFDRGL 255 Query: 254 SMFHLWFKDMLYFLYRKHESIVFIDQLDFISRHARQRSTEQWVAYMEFAAESKGKLRSNA 313 + L FKD+LY K V++++++ + ++A Q S + M E+K KL +N Sbjct: 256 DLLILIFKDLLYIQLGKKGQAVYLNEMNRLEQYALQTSGRRLTEQMTAILEAKRKLHANM 315 Query: 314 NAQLCLEQFLIRLE 327 N QL +EQ +++L+ Sbjct: 316 NPQLLMEQLVLKLQ 329 >A8W216.1 A8W216_9BACI Dihydropteroate synthase EC=2.5.1.15 Length = 330 Score = 215 bits (547), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 116/313 (37%), Positives = 180/313 (57%), Gaps = 6/313 (1%) Query: 19 LLQNALRKDAVSHAYLFTGPSGSGQMKTALMFAQAIFCTTCED-DACGECLECRKVEHGN 77 +L+ + K+ ++HAYLF G G+G+ + A + A+A C E D CG+C +CR+V+ GN Sbjct: 18 ILKRTIEKNRLAHAYLFEGSRGTGKQEIAKLVAKAFLCQVRESADPCGDCGDCRRVDSGN 77 Query: 78 HPDLSLLKPDGASIKIDQIRELQRMFSYRSEGVNPKVYIIEGADKMTVQAANSLLKFLEE 137 HPD+ L++PDG +IK++QIR L++ FS R KVY+++ AD MT A NSLLKFLEE Sbjct: 78 HPDVHLIEPDGTTIKVEQIRGLKKEFSMRGMESGRKVYLVQDADLMTASAGNSLLKFLEE 137 Query: 138 PPAPAVGILISDNSSSLLPTIQSRTQRIPFSPLHPEIMLQALSSEGVPVPLARCAVSLTS 197 P A+ IL++ +L TI SR Q + F PL P+ ++ L + V A +TS Sbjct: 138 PDGEALAILMTTRPQRILKTILSRVQVLSFHPLAPDEFVKTLVNHDVKERDALLLSRMTS 197 Query: 198 GLDGCRELLAQNWFAEMRNLVLQLAKESLGK-GSSAVATAGQ--KLFKTGLGEHLDILFS 254 LD + ++W AE RN V+QL + + + G S ++ FK L I Sbjct: 198 NLDEALSMTEEDWIAEARNKVIQLIDDLVTRPGYSLISLQDDWIPFFKEKTDVQLGI--D 255 Query: 255 MFHLWFKDMLYFLYRKHESIVFIDQLDFISRHARQRSTEQWVAYMEFAAESKGKLRSNAN 314 + LW++D+L + E IV++DQ D + + A S E+ ++E ++K ++ +N Sbjct: 256 LMTLWYRDVLRTKVDQMEQIVYVDQEDRLQKQAFSLSEERLARHLEAIVDTKRRIDANTT 315 Query: 315 AQLCLEQFLIRLE 327 QL +EQ LIRL+ Sbjct: 316 PQLAMEQMLIRLQ 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,810,470,263 Number of extensions: 69925032 Number of successful extensions: 215604 Number of sequences better than 1.0e-05: 2898 Number of HSP's gapped: 211581 Number of HSP's successfully gapped: 2940 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)