BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0010.p
         (147 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8V7.1 B3K8V7_9BACI Putative uncharacterized protein                178   1e-43
B1DIK1.1 B1DIK1_9BACL Putative uncharacterized protein                138   1e-31
C0ZHB3.1 C0ZHB3_BREBN Putative uncharacterized protein yaaR            92   1e-17
A3IDG5.1 A3IDG5_9BACI YaaR                                             82   1e-14
B0TGZ8.1 B0TGZ8_HELMI Putative uncharacterized protein                 80   7e-14

>B3K8V7.1 B3K8V7_9BACI Putative uncharacterized protein
          Length = 147

 Score =  178 bits (451), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/147 (55%), Positives = 110/147 (74%)

Query: 1   MKINPGYRPLKSELPTAEGTGRPVQQKTFTDIFQQQGEQKTMDELNQKIKDIQQQGDRLA 60
           MKINPG+RP+KSE+   +G  RP+Q+++F+D+ QQQGE+ T +EL++++++I  QGDRLA
Sbjct: 1   MKINPGFRPMKSEITVPDGNARPIQKRSFSDMMQQQGERATHEELSRQMREIAMQGDRLA 60

Query: 61  KSMTVRELAIYRNMIKKFLEETARRGVILKETKGWDRRGRGKRYKXXXXXXXXXXXXXXX 120
           K+MTVREL  Y+ M+++FLEET RRGV +KET+GWDRRGRGKRY                
Sbjct: 61  KAMTVRELKAYKLMVRRFLEETVRRGVKMKETRGWDRRGRGKRYNVIDEVDSALLEMADE 120

Query: 121 XXXSEQGRIDLLGRVGEIRGLLINFSF 147
              +EQGRIDLL +VGEIRG+LIN  F
Sbjct: 121 LLDTEQGRIDLLNKVGEIRGMLINLVF 147


>B1DIK1.1 B1DIK1_9BACL Putative uncharacterized protein
          Length = 147

 Score =  138 bits (348), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 95/147 (64%)

Query: 1   MKINPGYRPLKSELPTAEGTGRPVQQKTFTDIFQQQGEQKTMDELNQKIKDIQQQGDRLA 60
           MKI+  +RPL       +   +P   ++F+D   QQ   +T ++L QK+ +I  QG+RLA
Sbjct: 1   MKIDQSWRPLGQNRAGGDTATKPAPARSFSDALVQQDALRTQEQLQQKLTEIHNQGERLA 60

Query: 61  KSMTVRELAIYRNMIKKFLEETARRGVILKETKGWDRRGRGKRYKXXXXXXXXXXXXXXX 120
           ++MTVREL +YR M+K+FLE+T +RG+ LKE +G+DRRGR KRYK               
Sbjct: 61  RTMTVRELKMYRQMVKRFLEDTVKRGIGLKELRGFDRRGRTKRYKLLDEIDSALVSMAEE 120

Query: 121 XXXSEQGRIDLLGRVGEIRGLLINFSF 147
              +EQGRI+LLGR+GEIRGLLIN  F
Sbjct: 121 LLETEQGRIELLGRIGEIRGLLINLLF 147


>C0ZHB3.1 C0ZHB3_BREBN Putative uncharacterized protein yaaR
          Length = 148

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 1   MKINPGYRPLKSELPTAEGTGRP-VQQKTFTDIFQQQGEQKTMDELNQKIKDIQQQGDRL 59
           MKI+ G RP    + T +    P +++  F  + Q + E+ + ++L + + DI +QG  L
Sbjct: 1   MKISDGLRPKLDLIKTTDSRKNPQLEKLNFGTMIQGEDERMSQEKLTRLLTDIDKQGQIL 60

Query: 60  AKSMTVRELAIYRNMIKKFLEETARRGVILKETKGWDRRGRGKRYKXXXXXXXXXXXXXX 119
           A+S  VR+   Y+N++K+F+EE  + G+ L + +G +RRGR + YK              
Sbjct: 61  ARSRAVRDFYAYKNLVKQFMEEAVKFGIALDDRRGMNRRGRSRLYKIVKEVDAELLKLTD 120

Query: 120 XXXXSEQGRIDLLGRVGEIRGLLINFSF 147
                +   IDLL R+GEIRG+LIN  F
Sbjct: 121 ELLSEQAPTIDLLARIGEIRGMLINLYF 148


>A3IDG5.1 A3IDG5_9BACI YaaR
          Length = 146

 Score = 82.0 bits (201), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/121 (36%), Positives = 69/121 (57%)

Query: 25  QQKTFTDIFQQQGEQKTMDELNQKIKDIQQQGDRLAKSMTVRELAIYRNMIKKFLEETAR 84
           Q   F D+  +QG +   ++L + + DI   GDR+A+S  +RELA ++ ++K+FL+ET  
Sbjct: 24  QNNRFGDMVVKQGTKLQTEQLTRLLGDISTAGDRVARSRNLRELARFKMLVKRFLQETVE 83

Query: 85  RGVILKETKGWDRRGRGKRYKXXXXXXXXXXXXXXXXXXSEQGRIDLLGRVGEIRGLLIN 144
            G+ LK++  W+R G G+R K                   E+  IDLL ++GEI+GLLIN
Sbjct: 84  HGMELKQSHTWNRFGEGRRLKIIDTIDTRLVELAQDLLDEEKEAIDLLDKIGEIKGLLIN 143

Query: 145 F 145
            
Sbjct: 144 L 144


>B0TGZ8.1 B0TGZ8_HELMI Putative uncharacterized protein
          Length = 145

 Score = 79.7 bits (195), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 72/123 (58%)

Query: 23  PVQQKTFTDIFQQQGEQKTMDELNQKIKDIQQQGDRLAKSMTVRELAIYRNMIKKFLEET 82
           P  + +F +I  QQ EQ+++D+  +  + I+ QG  LA+S TV +L  Y+ ++K+F++E 
Sbjct: 21  PADKISFAEIMVQQREQRSIDKFVKMAEKIEDQGKILAESRTVEDLKKYKELVKQFMDEV 80

Query: 83  ARRGVILKETKGWDRRGRGKRYKXXXXXXXXXXXXXXXXXXSEQGRIDLLGRVGEIRGLL 142
            ++G+ L+E +G++RRGR K YK                   +   + +LG VGEI+GLL
Sbjct: 81  IKKGLQLEERRGFNRRGRAKIYKLITKVDEKLLELTDHVLKKQANSLKILGLVGEIKGLL 140

Query: 143 INF 145
           ++ 
Sbjct: 141 VDM 143


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 710,962,054
Number of extensions: 23447461
Number of successful extensions: 88343
Number of sequences better than 1.0e-05: 43
Number of HSP's gapped: 88323
Number of HSP's successfully gapped: 43
Length of query: 147
Length of database: 3,060,696,203
Length adjustment: 110
Effective length of query: 37
Effective length of database: 2,024,384,553
Effective search space: 74902228461
Effective search space used: 74902228461
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)