BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0009.p
         (109 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8V6.1 B3K8V6_9BACI Putative uncharacterized protein                208   1e-52
B1DIK2.1 B1DIK2_9BACL Putative uncharacterized protein                177   3e-43
Q9KGL8.1 Q9KGL8_BACHD BH0043 protein                                  175   1e-42
A8W217.1 A8W217_9BACI Aminotransferase, class IV                      171   3e-41
Q5WLY1.1 Q5WLY1_BACSK Putative uncharacterized protein                169   6e-41

>B3K8V6.1 B3K8V6_9BACI Putative uncharacterized protein
          Length = 109

 Score =  208 bits (529), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 98/109 (89%), Positives = 106/109 (97%)

Query: 1   MNLIIAIIQDKDSNRLSSELVKANFRATKLASTGGFLRAGNTTFMIGVDDSQVEAVLTVI 60
           M LI+AI+QDKDSNRLS+ LVKANFRATKLASTGGFL+AGNTTFMIGVDDSQVE+VL+VI
Sbjct: 1   MKLIVAIVQDKDSNRLSAALVKANFRATKLASTGGFLKAGNTTFMIGVDDSQVESVLSVI 60

Query: 61  RNSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVDRFEHY 109
           R SCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPV+RFEH+
Sbjct: 61  RTSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVERFEHF 109


>B1DIK2.1 B1DIK2_9BACL Putative uncharacterized protein
          Length = 109

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/109 (74%), Positives = 97/109 (88%)

Query: 1   MNLIIAIIQDKDSNRLSSELVKANFRATKLASTGGFLRAGNTTFMIGVDDSQVEAVLTVI 60
           M L+IAI+QDKDSNRLS+ LVK  FRATKLASTGGFLRAGNTTFMIG++D +V  VL VI
Sbjct: 1   MKLVIAIVQDKDSNRLSNALVKDGFRATKLASTGGFLRAGNTTFMIGIEDERVHEVLQVI 60

Query: 61  RNSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVDRFEHY 109
            ++CKVR+QLVTPV+P+ G+TDSY+P PVEVQVGGA VFV+PV+RFEH+
Sbjct: 61  SSNCKVRDQLVTPVSPIGGSTDSYIPFPVEVQVGGAAVFVVPVERFEHF 109


>Q9KGL8.1 Q9KGL8_BACHD BH0043 protein
          Length = 109

 Score =  175 bits (443), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/109 (70%), Positives = 95/109 (87%)

Query: 1   MNLIIAIIQDKDSNRLSSELVKANFRATKLASTGGFLRAGNTTFMIGVDDSQVEAVLTVI 60
           M LIIA++QDKDSNRLS  LVKAN+RATKLASTGGFL+AGNTTF+IG +D  VE V+++I
Sbjct: 1   MKLIIAVVQDKDSNRLSEALVKANYRATKLASTGGFLKAGNTTFLIGTEDEHVEEVMSII 60

Query: 61  RNSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVDRFEHY 109
           +++CK R+QLV P++PM G  DSY+P PVEVQVGGATVFVLPV++FE Y
Sbjct: 61  KDNCKSRDQLVAPISPMGGNADSYVPYPVEVQVGGATVFVLPVEQFEQY 109


>A8W217.1 A8W217_9BACI Aminotransferase, class IV
          Length = 109

 Score =  171 bits (432), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 78/109 (71%), Positives = 92/109 (84%)

Query: 1   MNLIIAIIQDKDSNRLSSELVKANFRATKLASTGGFLRAGNTTFMIGVDDSQVEAVLTVI 60
           M LI+A+IQDKDSNRLS  LV+ +F+ATKLASTGGFL+AGNTTFMIGV+D  V  VLT+I
Sbjct: 1   MKLIMAVIQDKDSNRLSDALVEHDFQATKLASTGGFLKAGNTTFMIGVEDEHVNEVLTII 60

Query: 61  RNSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVDRFEHY 109
             +CK REQLV P++PM G  DSY+P PVEVQVGGATVFVLPVD+FE +
Sbjct: 61  NENCKAREQLVAPISPMGGNADSYVPYPVEVQVGGATVFVLPVDQFEKF 109


>Q5WLY1.1 Q5WLY1_BACSK Putative uncharacterized protein
          Length = 109

 Score =  169 bits (428), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 94/109 (86%)

Query: 1   MNLIIAIIQDKDSNRLSSELVKANFRATKLASTGGFLRAGNTTFMIGVDDSQVEAVLTVI 60
           M LIIA++QDKDS RLS  LVKA+FRATKL+STGGFL+AGNTTF+IGVDD +VE V+ +I
Sbjct: 1   MKLIIAVVQDKDSTRLSDGLVKADFRATKLSSTGGFLKAGNTTFLIGVDDDKVEDVMEII 60

Query: 61  RNSCKVREQLVTPVTPMSGTTDSYLPLPVEVQVGGATVFVLPVDRFEHY 109
           + +C+ REQ+V P++PM G  DSY+P PVEVQVGGATVFVLPVD+FE +
Sbjct: 61  QKNCRSREQVVAPISPMGGNADSYVPYPVEVQVGGATVFVLPVDQFEQF 109


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 576,491,211
Number of extensions: 19414107
Number of successful extensions: 44429
Number of sequences better than 1.0e-05: 225
Number of HSP's gapped: 44354
Number of HSP's successfully gapped: 225
Length of query: 109
Length of database: 3,060,696,203
Length adjustment: 77
Effective length of query: 32
Effective length of database: 2,335,278,048
Effective search space: 74728897536
Effective search space used: 74728897536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)