BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0004.p
         (63 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8V3.1 B3K8V3_9BACI Sigma-F transcribed protein                      81   3e-14
B1DIK5.1 B1DIK5_9BACL Putative uncharacterized protein                 70   5e-11
C5D350.1 C5D350_9BACI Putative uncharacterized protein                 61   3e-08
A6CQR9.1 A6CQR9_9BACI Putative uncharacterized protein                 61   3e-08
C0ZHA9.1 C0ZHA9_BREBN Putative uncharacterized protein                 61   3e-08

>B3K8V3.1 B3K8V3_9BACI Sigma-F transcribed protein
          Length = 61

 Score = 80.9 bits (198), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 47/61 (77%)

Query: 3  MEQQTEQACIICGQMKEEGIVIVSHFICEDCEAEMVRTEAEDAKYRFFVGRMKKIDLQKN 62
          ME+ TE  CIIC Q K +GI IVS F+CE+CE+E+V T AEDAKY FF+ ++K+I + KN
Sbjct: 1  MEELTEHVCIICNQSKTDGITIVSQFVCEECESEIVHTSAEDAKYHFFIRQLKQIAMPKN 60

Query: 63 A 63
          A
Sbjct: 61 A 61


>B1DIK5.1 B1DIK5_9BACL Putative uncharacterized protein
          Length = 63

 Score = 70.5 bits (171), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 47/63 (74%), Gaps = 2/63 (3%)

Query: 3  MEQQTEQACIICGQMKEEG--IVIVSHFICEDCEAEMVRTEAEDAKYRFFVGRMKKIDLQ 60
          M ++ E  C ICG+ K EG  I IVS FICE CE+EMVRT+ +DAKY FF+ +MK+I ++
Sbjct: 1  MSEERELHCSICGEHKAEGEGIRIVSGFICESCESEMVRTDVKDAKYPFFIHQMKQIFIE 60

Query: 61 KNA 63
          KNA
Sbjct: 61 KNA 63


>C5D350.1 C5D350_9BACI Putative uncharacterized protein
          Length = 68

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 8  EQACIICGQMKEEGIVIVSHFICEDCEAEMVRTEAEDAKYRFFVGRMKKI 57
          E+ CI+C Q K+EGI I   F+C DCE E+V+T+  D KYRF+V +++KI
Sbjct: 12 ERVCIVCEQPKQEGIQIYDQFLCLDCEREIVQTDTTDPKYRFYVKQLRKI 61


>A6CQR9.1 A6CQR9_9BACI Putative uncharacterized protein
          Length = 71

 Score = 61.2 bits (147), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 38/55 (69%)

Query: 4  EQQTEQACIICGQMKEEGIVIVSHFICEDCEAEMVRTEAEDAKYRFFVGRMKKID 58
          E+   + CIIC Q K  GI + + F+C DCE +M+R+E +  +Y+FFV R+KK++
Sbjct: 11 EKTLREMCIICSQPKATGIHLYTSFVCIDCEKDMIRSETDSPQYKFFVERLKKVN 65


>C0ZHA9.1 C0ZHA9_BREBN Putative uncharacterized protein
          Length = 60

 Score = 60.8 bits (146), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query: 9  QACIICGQMKEEGIVIVSHFICEDCEAEMVRTEAEDAKYRFFVGRMKKIDLQKNA 63
          Q CI+C Q + +GI I   FIC+ CE EMV T+ +D KY FF+ +M++I L+K+A
Sbjct: 6  QRCIVCEQEQNDGIAICEQFICQRCEQEMVNTDVQDEKYPFFIHQMRRIWLRKDA 60


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.324    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 301,993,679
Number of extensions: 8175697
Number of successful extensions: 24323
Number of sequences better than 1.0e-05: 57
Number of HSP's gapped: 24322
Number of HSP's successfully gapped: 57
Length of query: 63
Length of database: 3,060,696,203
Length adjustment: 35
Effective length of query: 28
Effective length of database: 2,730,960,678
Effective search space: 76466898984
Effective search space used: 76466898984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)