BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0267.0002.p
         (174 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K8V2.1 B3K8V2_9BACI Putative uncharacterized protein                158   2e-37
B1DIK6.1 B1DIK6_9BACL Putative uncharacterized protein                 90   9e-17

>B3K8V2.1 B3K8V2_9BACI Putative uncharacterized protein
          Length = 173

 Score =  158 bits (400), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 113/172 (65%)

Query: 3   ANNKGSATFYQYKLIKKINITPAWLRIYMALPVICVVAETIFLSWWSILYMIIAAPVILW 62
           A+  G ATFY Y+LIKKI  + + L +Y++LP +   A T+++S + +LYM IA P++LW
Sbjct: 2   ADPHGQATFYHYRLIKKIQFSKSLLILYLSLPWLAAAAGTLWVSPYILLYMFIAFPLMLW 61

Query: 63  IQYVISRSVLLISGHPIAKRWKMSFRLPWLGYMSDQYINYGIFRKIQLHNLWIGLSITAF 122
           IQYVI  +VL++ G    KRW+   RLPWLGY+ DQ+++  +F  +Q +  W+G+ ++A 
Sbjct: 62  IQYVIGHTVLVLLGTGYRKRWRFRLRLPWLGYIPDQHVSRRVFMLVQFYTCWVGIVLSAI 121

Query: 123 FIVWAPPAFTVSMAVCHLWVLLPRLVTLFRLKSEQKDGMLKFTPTDASYYAQ 174
              W+   F +++   HLW+LLPR  T+ RL  ++KDGMLK    D SYY Q
Sbjct: 122 MAFWSSLPFAIAIVFWHLWLLLPRGYTMLRLSGQRKDGMLKMNEQDISYYQQ 173


>B1DIK6.1 B1DIK6_9BACL Putative uncharacterized protein
          Length = 176

 Score = 89.7 bits (221), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%)

Query: 5   NKGSATFYQYKLIKKINITPAWLRIYMALPVICVVAETIFLSWWSILYMIIAAPVILWIQ 64
           ++ +AT YQYKLI++  I P  ++ ++ + VI +  + +      +   +I   ++  I 
Sbjct: 7   DQQAATIYQYKLIRRKVIRPELVQSHILIAVILLAFQLLMYRMDGLFSWLIGFAIVQVIH 66

Query: 65  YVISRSVLLISGHPIAKRWKMSFRLPWLGYMSDQYINYGIFRKIQLHNLWIGLSITAFFI 124
            VI     +     + +RW      PW G+     I   ++R++  H  WIGL   A   
Sbjct: 67  LVILLLAFIRVDDAVDRRWVWGITPPWFGFKPANDIRLALYRRVHRHLFWIGLCAVAVMY 126

Query: 125 VWAPPAFTVSMAVCHLWVLLPRLVTLFRLKSEQKDGMLKFTPTDASYYAQ 174
            W  P+  +S+   HLW+++PR++     + + KDG+L+    +ASYY Q
Sbjct: 127 PWIQPSLLISILCWHLWLIIPRMLLSLAFRKQHKDGILRLQKNEASYYHQ 176


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.330    0.140    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,063,168,862
Number of extensions: 39575684
Number of successful extensions: 158250
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 158250
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 48
Effective length of database: 1,873,648,313
Effective search space: 89935119024
Effective search space used: 89935119024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 126 (53.1 bits)