BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0266.0010.p (298 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DBY2.1 B1DBY2_9BACL Dihydrodipicolinate synthase 310 1e-82 B3KCQ3.1 B3KCQ3_9BACI Dihydrodipicolinate synthase 278 5e-73 A0LEA7.1 DAPA_SYNFM Dihydrodipicolinate synthase EC=4.2.1.52 184 6e-45 A6M3G3.1 A6M3G3_CLOB8 Dihydrodipicolinate synthase 181 6e-44 Q1I6H5.1 Q1I6H5_PSEE4 Dihydrodipicolinate synthase EC=4.2.1.52 180 1e-43 >B1DBY2.1 B1DBY2_9BACL Dihydrodipicolinate synthase Length = 290 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 144/290 (49%), Positives = 207/290 (71%), Gaps = 1/290 (0%) Query: 1 MLTEEQIYGIYVPVVTPFNAAGEIDLESYQRYVNNIIKNSIHGLVVNGTTGESPTVNIQE 60 MLTE+ + GIYVPVVTP GE+D+ S++ YV ++++ ++G+VVNGTTGESPTV ++E Sbjct: 1 MLTEQDLKGIYVPVVTPMGTGGEVDIRSFESYVKQLVEDGVNGIVVNGTTGESPTVTLEE 60 Query: 61 LQTLVNTSREILKSSSIPLVIGTGTNDTASTVARTELAANSGADAVLVVVPYYSRPSQQG 120 + L +R + + + P+++GTGTNDTASTV +T +A GADA LVVVPYYSRPSQ+G Sbjct: 61 MAALTAAARSVCEPMNRPVIVGTGTNDTASTVRKTAVAGELGADAALVVVPYYSRPSQEG 120 Query: 121 IIEHFRKAAEVGIPVIAYDIPGRTGVGMSVDTARTILDMNNVVGLKDCSGSPLLVTELSR 180 IIEH+R+AA G+P++AY+IP RTG+ ++ DT R ILD++ V+G+KD SG L+ EL+ Sbjct: 121 IIEHYRQAASTGLPIVAYEIPSRTGIRLAPDTVRAILDLDGVIGIKDSSGGIELMIELAS 180 Query: 181 LGS-KPVLCGDDLHFFDXXXXXXXXXXXXXXNVHTAKFLGIYEQFRAGQIEEARAAFDRL 239 G KPVLCG+D++ +V T F+ +YEQ GQ+E +R +F L Sbjct: 181 SGDHKPVLCGEDIYLHAMLCCGAAGGMLASASVRTTAFVEVYEQLMQGQLEASRQSFGAL 240 Query: 240 IPLMKLLFKESNPAPIKWLLSAYGEIASDTLRLPMTSISSGLREELGAYL 289 + L++LLF+E NPAP+K+LL+ G IASD +RLP+T +S LR++L A+L Sbjct: 241 LSLIRLLFQEPNPAPLKYLLARQGIIASDHIRLPLTPVSEKLRQQLNAWL 290 >B3KCQ3.1 B3KCQ3_9BACI Dihydrodipicolinate synthase Length = 291 Score = 278 bits (710), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 138/291 (47%), Positives = 192/291 (65%) Query: 1 MLTEEQIYGIYVPVVTPFNAAGEIDLESYQRYVNNIIKNSIHGLVVNGTTGESPTVNIQE 60 ML+ + + GIYVPVVTPF+ +D+ SY RY+ N++ + I GL++NGTTGE+PTV +E Sbjct: 1 MLSPQDLRGIYVPVVTPFSHEYALDVPSYHRYLENLLSHDIQGLIINGTTGEAPTVTWEE 60 Query: 61 LQTLVNTSREILKSSSIPLVIGTGTNDTASTVARTELAANSGADAVLVVVPYYSRPSQQG 120 + +V +R+ L +P++IGTGTNDT S++ RTE A + GADAVLVV PYYSRPS +G Sbjct: 61 VVQVVEETRKGLDGRQLPVIIGTGTNDTFSSMKRTEWAGHIGADAVLVVTPYYSRPSIEG 120 Query: 121 IIEHFRKAAEVGIPVIAYDIPGRTGVGMSVDTARTILDMNNVVGLKDCSGSPLLVTELSR 180 II+HF K AEVGIPVI Y++P RTG+ + VD R I+++ V+G+KD + S L+ LS Sbjct: 121 IIQHFCKVAEVGIPVILYEVPSRTGISLPVDAIRRIMEIPGVIGMKDSTASTELMRSLSP 180 Query: 181 LGSKPVLCGDDLHFFDXXXXXXXXXXXXXXNVHTAKFLGIYEQFRAGQIEEARAAFDRLI 240 +KPVLCGDD+ F + NV+T F+ +Y+ G + F+ L+ Sbjct: 181 YDTKPVLCGDDVRFHEMLCHGASGGILASANVNTEAFIRVYQLAAQGDYSRSETEFEVLL 240 Query: 241 PLMKLLFKESNPAPIKWLLSAYGEIASDTLRLPMTSISSGLREELGAYLAG 291 P++ LF ESNPAP+KWLL+ G I+SDTLRLPM I+ L+ L G Sbjct: 241 PVIHQLFAESNPAPLKWLLAKQGLISSDTLRLPMGPITDELKLSLNQAFKG 291 >A0LEA7.1 DAPA_SYNFM Dihydrodipicolinate synthase EC=4.2.1.52 Length = 291 Score = 184 bits (468), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 104/287 (36%), Positives = 165/287 (57%), Gaps = 9/287 (3%) Query: 9 GIYVPVVTPFNAAGEIDLESYQRYVNNIIKNSIHGLVVNGTTGESPTVNIQELQTLVNTS 68 G V +VTPF A G++D E+++ + I N HG+V GTTGES T++ E + ++ + Sbjct: 4 GAMVAIVTPFKA-GQVDEETFRNLIEFQIANGTHGIVPCGTTGESATLSFNEHERVIEIA 62 Query: 69 REILKSSSIPLVIGTGTNDTASTVARTELAANSGADAVLVVVPYYSRPSQQGIIEHFRKA 128 E + +P++ GTG+N+T + T+ A N+GAD L++ PYY++P+Q+G+ H+ K Sbjct: 63 VEQV-DKRVPVIAGTGSNNTEEAIRLTKHAKNAGADGALLISPYYNKPTQEGLYRHYEKI 121 Query: 129 AE-VGIPVIAYDIPGRTGVGMSVDTARTILDMNNVVGLKDCSGSPLLVTE-LSRLGSK-P 185 A+ V IP++ Y+IPGRT V M DT + ++N+V +K+ +GS +T+ ++R G + Sbjct: 122 AKAVDIPLVPYNIPGRTAVNMEPDTIARLAKIDNIVAIKEAAGSMKQITDIIARCGDELV 181 Query: 186 VLCGDDLHFFDXXXXXXXXXXXXXXNVHTAKFLGIYEQFRAGQIEEARAAFDRLIPLMKL 245 VL G+D F N+ A + F G + AR + RL+PL Sbjct: 182 VLSGEDFLTFPLLCVGGKGVISVVSNIAPADMANLCNLFLGGDFDAARKLYYRLLPLCHG 241 Query: 246 LFKESNPAPIKWLLSAYGEIASDTLRLPMTSISSG----LREELGAY 288 LF E+NPAP+K L+ +I SD LRLP+ +S LR++L AY Sbjct: 242 LFYETNPAPVKAALAMMNKIPSDELRLPLAPMSPANRLRLRQDLQAY 288 >A6M3G3.1 A6M3G3_CLOB8 Dihydrodipicolinate synthase Length = 289 Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 165/290 (56%), Gaps = 9/290 (3%) Query: 6 QIYGIYVPVVTPFNAAGEIDLESYQRYVNNIIKNSIHGLVVNGTTGESPTVNIQELQTLV 65 ++ G+ VP++TPF G++D +SY+R +N+ ++ ++G++ TTGESPT+ E + ++ Sbjct: 3 KVEGVLVPLLTPF-KDGKVDFKSYERMINHYVEEGVNGIIPLATTGESPTILENEYEEIL 61 Query: 66 NTSREILKSSSIPLVIGTGTNDTASTVARTELAANSGADAVLVVVPYYSRPSQQGIIEHF 125 + E K+ +P+ IG G N+T+ + + +L + +L V PYYSRP Q+GI EHF Sbjct: 62 EKTVEYNKNR-VPVYIGLGGNNTSEVIKKLKLVEKHKVNGILSVTPYYSRPDQRGIYEHF 120 Query: 126 RKAAE-VGIPVIAYDIPGRTGVGMSVDTARTILDMNNVVGLKDCSGSPLLVTELSRLGSK 184 + +E + ++ Y+IP RTG + +T + + N++G+KDC GS TEL L + Sbjct: 121 KSISESTDLDIVLYNIPYRTGANIENETVHVLSQLKNIIGIKDCCGSMKQTTEL--LMNP 178 Query: 185 P----VLCGDDLHFFDXXXXXXXXXXXXXXNVHTAKFLGIYEQFRAGQIEEARAAFDRLI 240 P +L G+D++F+ +++T F+ +Y +A + A ++ L Sbjct: 179 PKDFSILTGEDMYFYTTLMLGGQGGIMASAHLNTKDFIEVYNLAKANDHQVALKKWNSLY 238 Query: 241 PLMKLLFKESNPAPIKWLLSAYGEIASDTLRLPMTSISSGLREELGAYLA 290 ++ LLF E NP P+K+ L G I SD +RLP+ +I+ GL ++ L Sbjct: 239 KMIPLLFSEPNPTPLKYSLKKLGLIDSDEVRLPLMNITKGLESKIDKILG 288 >Q1I6H5.1 Q1I6H5_PSEE4 Dihydrodipicolinate synthase EC=4.2.1.52 Length = 295 Score = 180 bits (457), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 107/291 (36%), Positives = 161/291 (55%), Gaps = 6/291 (2%) Query: 7 IYGIYVPVVTPFNAAGEIDLESYQRYVNNIIKNSIHGLVVNGTTGESPTVNIQELQTLVN 66 I G V +VTP +A G +D +S + V+ ++N H +V GTTGES T++++E ++ Sbjct: 2 IAGSMVALVTPMDAQGRLDWDSLDKLVDFHLENGTHAIVAVGTTGESATLDVEEHILVIK 61 Query: 67 TSREILKSSS--IPLVIGTGTNDTASTVARTELAANSGADAVLVVVPYYSRPSQQGIIEH 124 E +K S+ IP++ GTG N TA V T+ A N+GADA L+VVPYY++P+Q+G+ +H Sbjct: 62 HVVERVKHSNKRIPVIAGTGANSTAEAVHLTKNAKNAGADACLLVVPYYNKPTQEGLYQH 121 Query: 125 FRKAAE-VGIPVIAYDIPGRTGVGMSVDTARTILDMNNVVGLKDCSGSPLLVTELSRLGS 183 F+ AE V IP I Y++PGRT M DT + + N++G+K+ +G + Sbjct: 122 FKHIAEAVDIPQILYNVPGRTSCDMQADTVIRLSKVKNIIGIKEATGDLQRAKAILDGVD 181 Query: 184 KP--VLCGDDLHFFDXXXXXXXXXXXXXXNVHTAKFLGIYEQFRAGQIEEARAAFDRLIP 241 K VL GDD + NV + + E G E+ARA ++L+P Sbjct: 182 KDFIVLSGDDPTAVELILMGGKGNISVTANVAPREMADLCEAALEGNAEKARAINEKLMP 241 Query: 242 LMKLLFKESNPAPIKWLLSAYGEIASDTLRLPMTSISSGLREELGAYLAGS 292 L K LF E+NP P+KW L G + +RLP+T +S G E++ L S Sbjct: 242 LHKDLFCEANPIPVKWALVEMG-LMQKGIRLPLTWLSEGCHEKVRTALRQS 291 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,649,024,579 Number of extensions: 65815969 Number of successful extensions: 203001 Number of sequences better than 1.0e-05: 3039 Number of HSP's gapped: 196470 Number of HSP's successfully gapped: 3039 Length of query: 298 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 163 Effective length of database: 1,788,859,178 Effective search space: 291584046014 Effective search space used: 291584046014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)